Wall clock time and date at job start Mon Mar 30 2020 23:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00040 * 2 1 4 4 C 1.50697 * 120.00004 * 359.97438 * 3 2 1 5 5 H 1.08996 * 109.46956 * 40.00584 * 4 3 2 6 6 C 1.52995 * 109.47622 * 280.00164 * 4 3 2 7 7 N 1.46901 * 109.46823 * 160.00000 * 4 3 2 8 8 C 1.46905 * 111.00116 * 205.00190 * 7 4 3 9 9 C 1.52991 * 109.47208 * 180.02562 * 8 7 4 10 10 C 1.50705 * 109.47246 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99720 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00123 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99808 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47158 * 89.99824 * 14 12 10 16 16 H 1.48496 * 109.47159 * 210.00101 * 14 12 10 17 17 H 1.48504 * 109.47081 * 329.99988 * 14 12 10 18 18 C 1.38213 * 119.99965 * 180.25890 * 3 2 1 19 19 C 1.38261 * 120.00020 * 359.53044 * 18 3 2 20 20 C 1.38220 * 119.99621 * 0.40198 * 19 18 3 21 21 C 1.38214 * 119.99663 * 179.97438 * 2 1 3 22 22 N 1.48014 * 120.00270 * 359.97025 * 21 2 1 23 23 O 1.21794 * 120.00517 * 217.11550 * 22 21 2 24 24 O 1.21805 * 119.99496 * 37.11877 * 22 21 2 25 25 H 1.09002 * 109.47243 * 95.13720 * 1 2 3 26 26 H 1.08995 * 109.47350 * 215.14146 * 1 2 3 27 27 H 1.09004 * 109.46871 * 335.13995 * 1 2 3 28 28 H 1.09005 * 109.47195 * 59.99780 * 6 4 3 29 29 H 1.08994 * 109.47361 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47299 * 300.00211 * 6 4 3 31 31 H 1.00897 * 111.00321 * 328.96033 * 7 4 3 32 32 H 1.08994 * 109.46785 * 59.99816 * 8 7 4 33 33 H 1.09000 * 109.46616 * 300.00393 * 8 7 4 34 34 H 1.08997 * 109.47667 * 300.00161 * 9 8 7 35 35 H 1.09004 * 109.47501 * 60.00019 * 9 8 7 36 36 H 0.97001 * 120.00040 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.00436 * 179.72924 * 18 3 2 38 38 H 1.07988 * 120.00486 * 180.23794 * 19 18 3 39 39 H 1.08003 * 119.99935 * 179.83128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4449 2.5024 -0.0006 5 1 0.5813 2.4236 0.6597 6 6 0.9734 2.8186 -1.4213 7 7 2.3270 3.5773 0.4732 8 6 1.5483 4.6837 1.0455 9 6 2.4992 5.7815 1.5262 10 6 1.7003 6.9169 2.1126 11 1 0.6221 6.8607 2.1401 12 6 2.3459 8.0268 2.6151 13 7 3.6588 8.0948 2.5820 14 14 1.3557 9.4337 3.3426 15 1 1.1564 9.1994 4.7954 16 1 2.0883 10.7098 3.1429 17 1 0.0350 9.5103 2.6679 18 6 3.5805 1.1973 -0.0054 19 6 4.2718 0.0000 -0.0010 20 6 3.5806 -1.1970 0.0004 21 6 2.1980 -1.1970 0.0005 22 7 1.4580 -2.4788 0.0018 23 8 1.8821 -3.4264 0.6387 24 8 0.4247 -2.5860 -0.6343 25 1 -0.3634 -0.0920 -1.0235 26 1 -0.3634 -0.8403 0.5915 27 1 -0.3633 0.9325 0.4321 28 1 0.3189 2.0210 -1.7729 29 1 0.4281 3.7623 -1.4216 30 1 1.8370 2.8974 -2.0816 31 1 2.9995 3.2263 1.1386 32 1 0.9607 4.3172 1.8871 33 1 0.8804 5.0891 0.2853 34 1 3.1674 5.3764 2.2861 35 1 3.0865 6.1480 0.6841 36 1 4.1130 8.8758 2.9351 37 1 4.1205 2.1325 -0.0098 38 1 5.3517 -0.0001 -0.0013 39 1 4.1206 -2.1324 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273303031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:49 Heat of formation + Delta-G solvation = 10.684151 kcal Electronic energy + Delta-G solvation = -21127.284685 eV Core-core repulsion = 17844.703732 eV Total energy + Delta-G solvation = -3282.580953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40188 -40.23480 -36.82651 -36.69733 -33.90806 -33.28827 -32.05558 -30.13217 -28.33731 -27.84948 -26.20655 -24.57197 -23.33507 -22.10922 -20.71885 -20.62016 -18.83013 -18.69470 -17.76655 -16.55493 -16.44103 -16.03426 -15.49614 -14.86442 -14.48215 -14.31003 -13.94402 -13.64735 -13.20186 -12.76184 -12.69624 -12.45682 -12.38631 -12.27701 -12.08609 -11.72616 -11.66409 -11.26400 -11.18674 -11.14332 -11.04695 -10.85868 -10.59601 -10.10887 -9.66693 -9.52318 -9.25295 -9.18644 -8.43824 -8.09933 -6.07896 -4.10848 -0.17208 0.68621 1.03269 1.24695 3.02025 3.26777 3.33489 3.36324 4.01524 4.11056 4.30699 4.45096 4.53018 4.55075 4.75722 4.91095 5.10823 5.16214 5.19724 5.28565 5.34328 5.39278 5.56920 5.66250 5.76356 5.81382 5.91325 6.01496 6.02696 6.16311 6.23261 6.30348 6.36979 6.84275 7.26012 7.47651 7.56632 7.65045 7.78273 7.96117 8.33162 8.96032 9.53592 11.03456 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.003170 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.456155 B = 8831.365521 C = 9164.209207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.020 4.020 3 C -0.078 4.078 4 C 0.120 3.880 5 H 0.059 0.941 6 C -0.135 4.135 7 N -0.686 5.686 8 C 0.065 3.935 9 C 0.026 3.974 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.056 4.056 19 C -0.118 4.118 20 C -0.065 4.065 21 C -0.043 4.043 22 N 0.028 4.972 23 O -0.164 6.164 24 O -0.152 6.152 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.337 0.663 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 -17.356 -6.771 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 C -0.079 4.079 4 C 0.010 3.990 5 H 0.076 0.924 6 C -0.193 4.193 7 N -0.318 5.318 8 C -0.063 4.063 9 C -0.011 4.011 10 C -0.563 4.563 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.074 4.074 19 C -0.137 4.137 20 C -0.084 4.084 21 C -0.125 4.125 22 N 0.549 4.451 23 O -0.380 6.380 24 O -0.371 6.371 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.175 0.825 38 H 0.165 0.835 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.740 -16.317 -7.334 17.905 hybrid contribution -0.812 0.022 1.333 1.561 sum -1.552 -16.294 -6.002 17.434 Atomic orbital electron populations 1.21129 0.89044 1.04001 1.04445 1.19547 0.97623 0.89951 0.95032 1.20019 0.94085 0.93993 0.99775 1.20517 0.94063 0.86353 0.98076 0.92370 1.21781 1.01316 1.01619 0.94600 1.60837 1.17601 1.08872 1.44513 1.22250 0.96712 0.91231 0.96087 1.19062 0.94247 0.91513 0.96323 1.21150 0.93123 1.02302 1.39686 0.92732 1.24996 0.94888 0.98438 0.95970 1.69961 1.07316 1.29666 1.46232 0.86580 0.80151 0.81739 0.79457 1.20674 1.21146 1.19841 1.21685 0.93745 0.99706 0.92274 1.21218 1.01058 0.90731 1.00645 1.20925 0.90515 1.00709 0.96258 1.20818 0.92441 0.82842 1.16437 1.43624 1.00529 1.02598 0.98345 1.94542 1.71448 1.30803 1.41173 1.94528 1.12231 1.89552 1.40785 0.88656 0.91013 0.89775 0.92730 0.91477 0.91752 0.84382 0.96396 0.91925 0.96846 0.95544 0.92920 0.82530 0.83486 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 7.55 36.01 0.27 -1.05 16 2 C -0.02 -0.22 5.87 -104.62 -0.61 -0.84 16 3 C -0.08 -0.88 4.99 -104.63 -0.52 -1.40 16 4 C 0.12 1.50 2.23 -68.87 -0.15 1.35 16 5 H 0.06 0.74 6.05 -51.93 -0.31 0.43 16 6 C -0.14 -1.58 9.34 37.16 0.35 -1.23 16 7 N -0.69 -10.55 5.60 -107.96 -0.61 -11.16 16 8 C 0.06 1.25 5.42 -3.83 -0.02 1.23 16 9 C 0.03 0.64 5.23 -27.89 -0.15 0.49 16 10 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 14 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 C -0.06 -0.57 8.87 -39.58 -0.35 -0.92 16 19 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 20 C -0.06 -0.63 9.66 -39.58 -0.38 -1.01 16 21 C -0.04 -0.51 6.48 -79.95 -0.52 -1.02 16 22 N 0.03 0.37 4.14 33.96 0.14 0.51 16 23 O -0.16 -2.27 18.94 -29.46 -0.56 -2.82 16 24 O -0.15 -2.06 16.76 -29.46 -0.49 -2.55 16 25 H 0.10 0.88 8.02 -51.93 -0.42 0.46 16 26 H 0.07 0.76 6.88 -51.93 -0.36 0.41 16 27 H 0.08 0.79 5.94 -51.93 -0.31 0.48 16 28 H 0.05 0.54 7.26 -51.93 -0.38 0.16 16 29 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.34 4.98 6.99 -39.29 -0.27 4.71 16 32 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 33 H 0.06 1.20 7.44 -51.93 -0.39 0.82 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.16 1.57 6.72 -52.49 -0.35 1.22 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.14 1.15 8.01 -52.48 -0.42 0.73 16 LS Contribution 327.19 15.07 4.93 4.93 Total: -1.00 -30.01 327.19 -9.01 -39.02 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.24 Total: 0.29 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -2.90 Total: -18.92 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.27 Total: -36.07 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -1.05 Total: -5.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.01 -9.01 -39.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.708 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds