Wall clock time and date at job start Mon Mar 30 2020 23:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 120.00040 * 2 1 4 4 C 1.50697 * 120.00004 * 359.97438 * 3 2 1 5 5 H 1.08996 * 109.46956 * 40.00584 * 4 3 2 6 6 C 1.52995 * 109.47622 * 280.00164 * 4 3 2 7 7 N 1.46901 * 109.46823 * 160.00000 * 4 3 2 8 8 C 1.46905 * 111.00116 * 205.00190 * 7 4 3 9 9 C 1.52991 * 109.47208 * 180.02562 * 8 7 4 10 10 C 1.50705 * 109.47246 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99720 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00123 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99808 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47158 * 89.99824 * 14 12 10 16 16 H 1.48496 * 109.47159 * 210.00101 * 14 12 10 17 17 H 1.48504 * 109.47081 * 329.99988 * 14 12 10 18 18 C 1.38213 * 119.99965 * 180.25890 * 3 2 1 19 19 C 1.38261 * 120.00020 * 359.53044 * 18 3 2 20 20 C 1.38220 * 119.99621 * 0.40198 * 19 18 3 21 21 C 1.38214 * 119.99663 * 179.97438 * 2 1 3 22 22 N 1.48014 * 120.00270 * 359.97025 * 21 2 1 23 23 O 1.21794 * 120.00517 * 217.11550 * 22 21 2 24 24 O 1.21805 * 119.99496 * 37.11877 * 22 21 2 25 25 H 1.09002 * 109.47243 * 95.13720 * 1 2 3 26 26 H 1.08995 * 109.47350 * 215.14146 * 1 2 3 27 27 H 1.09004 * 109.46871 * 335.13995 * 1 2 3 28 28 H 1.09005 * 109.47195 * 59.99780 * 6 4 3 29 29 H 1.08994 * 109.47361 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47299 * 300.00211 * 6 4 3 31 31 H 1.00897 * 111.00321 * 328.96033 * 7 4 3 32 32 H 1.08994 * 109.46785 * 59.99816 * 8 7 4 33 33 H 1.09000 * 109.46616 * 300.00393 * 8 7 4 34 34 H 1.08997 * 109.47667 * 300.00161 * 9 8 7 35 35 H 1.09004 * 109.47501 * 60.00019 * 9 8 7 36 36 H 0.97001 * 120.00040 * 179.97438 * 13 12 10 37 37 H 1.07996 * 120.00436 * 179.72924 * 18 3 2 38 38 H 1.07988 * 120.00486 * 180.23794 * 19 18 3 39 39 H 1.08003 * 119.99935 * 179.83128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 1.4449 2.5024 -0.0006 5 1 0.5813 2.4236 0.6597 6 6 0.9734 2.8186 -1.4213 7 7 2.3270 3.5773 0.4732 8 6 1.5483 4.6837 1.0455 9 6 2.4992 5.7815 1.5262 10 6 1.7003 6.9169 2.1126 11 1 0.6221 6.8607 2.1401 12 6 2.3459 8.0268 2.6151 13 7 3.6588 8.0948 2.5820 14 14 1.3557 9.4337 3.3426 15 1 1.1564 9.1994 4.7954 16 1 2.0883 10.7098 3.1429 17 1 0.0350 9.5103 2.6679 18 6 3.5805 1.1973 -0.0054 19 6 4.2718 0.0000 -0.0010 20 6 3.5806 -1.1970 0.0004 21 6 2.1980 -1.1970 0.0005 22 7 1.4580 -2.4788 0.0018 23 8 1.8821 -3.4264 0.6387 24 8 0.4247 -2.5860 -0.6343 25 1 -0.3634 -0.0920 -1.0235 26 1 -0.3634 -0.8403 0.5915 27 1 -0.3633 0.9325 0.4321 28 1 0.3189 2.0210 -1.7729 29 1 0.4281 3.7623 -1.4216 30 1 1.8370 2.8974 -2.0816 31 1 2.9995 3.2263 1.1386 32 1 0.9607 4.3172 1.8871 33 1 0.8804 5.0891 0.2853 34 1 3.1674 5.3764 2.2861 35 1 3.0865 6.1480 0.6841 36 1 4.1130 8.8758 2.9351 37 1 4.1205 2.1325 -0.0098 38 1 5.3517 -0.0001 -0.0013 39 1 4.1206 -2.1324 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273303031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:48 Heat of formation + Delta-G solvation = -5.595467 kcal Electronic energy + Delta-G solvation = -21127.990622 eV Core-core repulsion = 17844.703732 eV Total energy + Delta-G solvation = -3283.286890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.36532 -41.11877 -37.99111 -37.72488 -35.48927 -34.40048 -33.44442 -31.37816 -29.66628 -28.84340 -27.09711 -26.23557 -24.46657 -23.14775 -22.21165 -21.67134 -19.81486 -19.66488 -18.72769 -18.46688 -17.39123 -17.16011 -16.64191 -16.36620 -15.80175 -15.24755 -15.07046 -14.71902 -14.52624 -14.05645 -13.82813 -13.63651 -13.37585 -13.26945 -13.14653 -12.91847 -12.86339 -12.74640 -12.69174 -12.40174 -12.28139 -12.17070 -12.02306 -11.67108 -11.40142 -11.25902 -10.56382 -10.48820 -10.03067 -9.39455 -8.20700 -6.31277 -1.11300 -0.10147 0.11306 0.32875 1.41034 1.41606 1.52632 2.21883 2.40107 3.06264 3.13526 3.29616 3.34297 3.69685 3.76046 3.96861 4.02563 4.21179 4.27716 4.37671 4.50653 4.52023 4.55510 4.62509 4.75839 4.86379 4.91309 4.95878 5.06459 5.06792 5.11842 5.17423 5.33902 5.46431 5.52304 5.67909 5.78451 6.09794 6.23768 6.44481 6.45153 6.86174 7.38085 8.91138 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032993 B = 0.003170 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.456155 B = 8831.365521 C = 9164.209207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.024 4.024 3 C -0.085 4.085 4 C 0.123 3.877 5 H 0.060 0.940 6 C -0.133 4.133 7 N -0.686 5.686 8 C 0.084 3.916 9 C 0.032 3.968 10 C -0.544 4.544 11 H 0.060 0.940 12 C 0.003 3.997 13 N -0.930 5.930 14 Si 0.962 3.038 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.263 1.263 18 C -0.059 4.059 19 C -0.105 4.105 20 C -0.062 4.062 21 C -0.060 4.060 22 N 0.030 4.970 23 O -0.182 6.182 24 O -0.161 6.161 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.341 0.659 32 H 0.019 0.981 33 H 0.063 0.937 34 H -0.008 1.008 35 H -0.002 1.002 36 H 0.263 0.737 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -17.618 -6.916 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.026 4.026 3 C -0.087 4.087 4 C 0.014 3.986 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.318 5.318 8 C -0.045 4.045 9 C -0.005 4.005 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.187 1.187 18 C -0.077 4.077 19 C -0.123 4.123 20 C -0.081 4.081 21 C -0.142 4.142 22 N 0.548 4.452 23 O -0.394 6.394 24 O -0.380 6.380 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.011 0.989 35 H 0.017 0.983 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.198 0.802 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.023 -16.616 -7.478 18.250 hybrid contribution -0.663 0.078 1.348 1.505 sum -1.686 -16.538 -6.130 17.718 Atomic orbital electron populations 1.21149 0.88535 1.03949 1.04925 1.19601 0.98134 0.89790 0.95075 1.19849 0.94509 0.93173 1.01129 1.20495 0.93695 0.86041 0.98378 0.92194 1.21768 1.01417 1.01880 0.93986 1.60723 1.17771 1.09264 1.44075 1.21832 0.95479 0.91024 0.96126 1.18906 0.94401 0.92668 0.94535 1.21622 0.93710 1.03320 1.39636 0.92215 1.25913 0.95932 1.01308 0.96401 1.70087 1.09031 1.30604 1.47271 0.85486 0.78853 0.78159 0.78788 1.19913 1.20844 1.18749 1.21818 0.93409 1.00524 0.91922 1.21538 1.02546 0.89455 0.98792 1.21250 0.89785 1.01968 0.95056 1.21012 0.93200 0.82049 1.17933 1.43843 1.00441 1.03011 0.97916 1.94530 1.71640 1.31604 1.41666 1.94513 1.12715 1.89805 1.40922 0.87755 0.91775 0.89189 0.90711 0.92454 0.92103 0.83975 0.96265 0.91858 0.98936 0.98333 0.92777 0.82469 0.80222 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.55 71.24 0.54 -1.93 16 2 C -0.02 -0.51 5.87 -19.86 -0.12 -0.63 16 3 C -0.09 -1.80 4.99 -19.87 -0.10 -1.89 16 4 C 0.12 2.93 2.23 44.17 0.10 3.03 16 5 H 0.06 1.44 6.05 -2.39 -0.01 1.42 16 6 C -0.13 -2.91 9.34 71.98 0.67 -2.24 16 7 N -0.69 -20.66 5.60 -495.48 -2.78 -23.44 16 8 C 0.08 3.21 5.42 86.30 0.47 3.67 16 9 C 0.03 1.62 5.23 29.85 0.16 1.78 16 10 C -0.54 -29.93 9.11 25.60 0.23 -29.69 16 11 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.93 -55.15 13.29 21.45 0.28 -54.86 16 14 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 18 C -0.06 -1.08 8.87 22.27 0.20 -0.88 16 19 C -0.11 -1.51 10.05 22.27 0.22 -1.29 16 20 C -0.06 -1.05 9.66 22.27 0.22 -0.83 16 21 C -0.06 -1.31 6.48 36.38 0.24 -1.07 16 22 N 0.03 0.75 4.14 -46.47 -0.19 0.56 16 23 O -0.18 -4.90 18.94 18.89 0.36 -4.55 16 24 O -0.16 -4.25 16.76 18.88 0.32 -3.94 16 25 H 0.10 1.77 8.02 -2.39 -0.02 1.75 16 26 H 0.06 1.32 6.88 -2.39 -0.02 1.30 16 27 H 0.09 1.57 5.94 -2.39 -0.01 1.56 16 28 H 0.07 1.33 7.26 -2.38 -0.02 1.31 16 29 H 0.06 1.37 7.45 -2.39 -0.02 1.35 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.34 9.87 6.99 -89.70 -0.63 9.24 16 32 H 0.02 0.72 8.05 -2.39 -0.02 0.71 16 33 H 0.06 2.40 7.44 -2.39 -0.02 2.39 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.16 2.89 6.72 -2.91 -0.02 2.87 16 38 H 0.18 1.39 8.06 -2.92 -0.02 1.37 16 39 H 0.16 2.15 8.01 -2.91 -0.02 2.13 16 Total: -1.00 -64.40 327.19 3.74 -60.66 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.44 Total: 11.77 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.29 Total: -31.36 kcal Atomic # 7 Polarization: -75.06 SS G_CDS: -2.68 Total: -77.74 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.67 Total: -8.48 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.40 3.74 -60.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273303031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.061 kcal (2) G-P(sol) polarization free energy of solvation -64.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds