Wall clock time and date at job start Tue Mar 31 2020 00:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47081 * 71.96210 * 3 2 1 5 5 C 1.36116 * 120.00106 * 93.81162 * 4 3 2 6 6 H 1.07994 * 120.00123 * 170.63167 * 5 4 3 7 7 C 1.39586 * 119.99751 * 350.62447 * 5 4 3 8 8 N 1.31012 * 120.00578 * 333.46367 * 7 5 4 9 9 Si 1.86803 * 119.99838 * 153.46181 * 7 5 4 10 10 H 1.48500 * 109.47114 * 94.99900 * 9 7 5 11 11 H 1.48500 * 109.47236 * 214.99832 * 9 7 5 12 12 H 1.48502 * 109.47155 * 335.00061 * 9 7 5 13 13 C 1.34775 * 119.99971 * 273.80298 * 4 3 2 14 14 O 1.21503 * 120.00229 * 185.18162 * 13 4 3 15 15 C 1.48839 * 120.00158 * 5.19517 * 13 4 3 16 16 O 1.21442 * 120.00020 * 84.02399 * 15 13 4 17 17 N 1.34775 * 119.99403 * 264.02949 * 15 13 4 18 18 C 1.46923 * 120.63487 * 355.15386 * 17 15 13 19 19 C 1.53621 * 108.54552 * 126.36744 * 18 17 15 20 20 C 1.53042 * 109.24107 * 54.85439 * 19 18 17 21 21 C 1.52998 * 109.45171 * 178.49776 * 20 19 18 22 22 C 1.53037 * 109.53918 * 298.51131 * 20 19 18 23 23 C 1.46927 * 120.62435 * 175.43065 * 17 15 13 24 24 H 4.40637 * 5.51424 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47352 * 311.96419 * 3 2 1 26 26 H 1.09001 * 109.47024 * 191.96090 * 3 2 1 27 27 H 0.96998 * 120.00302 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.58389 * 246.19957 * 18 17 15 29 29 H 1.09001 * 109.58507 * 6.62607 * 18 17 15 30 30 H 1.09004 * 109.63484 * 294.86865 * 19 18 17 31 31 H 1.09001 * 109.43516 * 174.72357 * 19 18 17 32 32 H 1.09004 * 109.45901 * 58.53376 * 20 19 18 33 33 H 1.08999 * 109.47243 * 180.02562 * 21 20 19 34 34 H 1.09000 * 109.46897 * 300.06398 * 21 20 19 35 35 H 1.09001 * 109.47228 * 60.05894 * 21 20 19 36 36 H 1.08993 * 109.50201 * 301.41146 * 22 20 19 37 37 H 1.09006 * 109.49841 * 181.31430 * 22 20 19 38 38 H 1.09003 * 109.58957 * 353.37457 * 23 17 15 39 39 H 1.09001 * 109.58406 * 113.65908 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4268 -1.3134 5 6 3.4348 0.5011 -2.2629 6 1 3.9349 0.2012 -3.1718 7 6 3.0962 1.8402 -2.0617 8 7 2.0874 2.1516 -1.2860 9 14 4.0816 3.1886 -2.8986 10 1 3.4117 3.5776 -4.1656 11 1 4.1672 4.3688 -2.0014 12 1 5.4493 2.6913 -3.1944 13 6 3.2867 -1.7389 -1.5814 14 8 3.7799 -2.0906 -2.6346 15 6 2.8504 -2.7570 -0.5873 16 8 1.6900 -3.1133 -0.5523 17 7 3.7433 -3.2835 0.2741 18 6 5.1691 -2.9427 0.1759 19 6 5.6453 -2.4343 1.5451 20 6 5.3220 -3.4822 2.6126 21 6 5.8280 -2.9971 3.9725 22 6 3.8080 -3.6956 2.6784 23 6 3.3101 -4.2139 1.3255 24 1 -1.0499 0.0001 -0.0002 25 1 3.0097 -0.6863 0.7641 26 1 3.0088 1.0062 0.2130 27 1 1.8524 3.0822 -1.1459 28 1 5.7379 -3.8287 -0.1060 29 1 5.3076 -2.1631 -0.5732 30 1 5.1370 -1.5007 1.7863 31 1 6.7218 -2.2657 1.5150 32 1 5.8106 -4.4228 2.3578 33 1 5.5983 -3.7435 4.7330 34 1 6.9063 -2.8451 3.9258 35 1 5.3393 -2.0569 4.2277 36 1 3.3170 -2.7502 2.9088 37 1 3.5768 -4.4249 3.4549 38 1 2.2217 -4.2735 1.3351 39 1 3.7285 -5.2021 1.1340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282070321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:11 Heat of formation + Delta-G solvation = -23.633328 kcal Electronic energy + Delta-G solvation = -22765.715126 eV Core-core repulsion = 19481.646056 eV Total energy + Delta-G solvation = -3284.069071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82392 -39.84728 -38.56964 -37.31234 -34.92739 -34.16172 -33.22545 -32.15668 -29.49433 -28.56077 -27.42566 -25.26570 -24.34360 -23.18010 -21.26222 -20.16464 -19.93303 -18.78750 -18.50274 -17.79927 -17.19016 -16.41282 -15.97499 -15.77135 -15.66336 -15.39129 -15.11813 -14.76472 -14.49820 -14.27849 -14.21099 -14.19005 -13.66909 -13.52520 -12.84970 -12.75069 -12.69120 -12.57249 -12.33283 -12.12904 -12.11280 -11.81565 -11.35345 -11.33474 -11.28069 -11.19205 -10.78205 -10.28825 -10.09112 -9.77020 -8.50527 -6.00644 1.12917 1.27446 1.43517 1.51526 1.63903 1.77555 2.08317 2.25705 2.33489 2.90055 2.99213 3.57655 3.74983 3.80014 3.88356 3.90057 4.11337 4.29724 4.36818 4.41470 4.54087 4.74565 4.77674 4.80562 4.86142 4.92450 4.97541 5.11828 5.12616 5.22754 5.27059 5.36676 5.42066 5.51924 5.57348 5.76190 6.09029 6.23933 6.84769 6.90344 7.03007 7.14886 7.68203 8.48565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018619 B = 0.006271 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.451584 B = 4464.192402 C = 4746.672492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C 0.233 3.767 4 N -0.404 5.404 5 C -0.369 4.369 6 H 0.088 0.912 7 C 0.014 3.986 8 N -0.851 5.851 9 Si 0.992 3.008 10 H -0.277 1.277 11 H -0.261 1.261 12 H -0.265 1.265 13 C 0.409 3.591 14 O -0.615 6.615 15 C 0.527 3.473 16 O -0.558 6.558 17 N -0.594 5.594 18 C 0.102 3.898 19 C -0.124 4.124 20 C -0.087 4.087 21 C -0.141 4.141 22 C -0.121 4.121 23 C 0.103 3.897 24 H 0.235 0.765 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.282 0.718 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -5.643 13.529 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.167 4.167 3 C 0.111 3.889 4 N -0.120 5.120 5 C -0.496 4.496 6 H 0.106 0.894 7 C -0.193 4.193 8 N -0.486 5.486 9 Si 0.813 3.187 10 H -0.203 1.203 11 H -0.185 1.185 12 H -0.189 1.189 13 C 0.195 3.805 14 O -0.503 6.503 15 C 0.311 3.689 16 O -0.436 6.436 17 N -0.328 5.328 18 C -0.020 4.020 19 C -0.162 4.162 20 C -0.106 4.106 21 C -0.199 4.199 22 C -0.159 4.159 23 C -0.018 4.018 24 H 0.251 0.749 25 H 0.096 0.904 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.002 -5.803 13.152 15.990 hybrid contribution -0.374 0.742 -0.969 1.276 sum 6.628 -5.061 12.183 14.764 Atomic orbital electron populations 1.25178 0.96473 1.03325 1.00168 1.23340 0.95065 0.98164 1.00120 1.18478 0.84873 1.01939 0.83588 1.43731 1.52071 1.03718 1.12489 1.19712 1.39478 0.87721 1.02665 0.89397 1.26216 0.95350 0.99856 0.97875 1.70086 1.21239 1.20739 1.36514 0.84986 0.78851 0.76778 0.78065 1.20311 1.18508 1.18919 1.19869 0.88177 0.83666 0.88751 1.90586 1.51145 1.80116 1.28438 1.20358 0.85612 0.82352 0.80603 1.90673 1.19257 1.63055 1.70660 1.48318 1.08476 1.45598 1.30427 1.22053 0.79162 1.01421 0.99396 1.22081 1.02555 0.98928 0.92615 1.21131 0.94892 0.99050 0.95491 1.21774 1.01364 1.01262 0.95459 1.21975 0.96408 1.02126 0.95404 1.21898 1.00880 0.92413 0.86593 0.74864 0.90376 0.86803 0.90700 0.88987 0.92211 0.92565 0.88348 0.89387 0.91410 0.91702 0.93335 0.92791 0.87912 0.90932 0.89228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -10.43 19.25 74.32 1.43 -9.00 16 2 C -0.17 -8.08 11.51 31.12 0.36 -7.72 16 3 C 0.23 10.98 4.91 84.57 0.42 11.40 16 4 N -0.40 -21.58 2.57 -647.77 -1.66 -23.24 16 5 C -0.37 -20.65 9.41 84.35 0.79 -19.85 16 6 H 0.09 5.26 7.30 -2.91 -0.02 5.24 16 7 C 0.01 0.72 4.84 85.14 0.41 1.13 16 8 N -0.85 -43.12 9.45 21.77 0.21 -42.92 16 9 Si 0.99 39.70 29.63 68.60 2.03 41.74 16 10 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 11 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 12 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 13 C 0.41 22.09 5.36 87.08 0.47 22.55 16 14 O -0.61 -37.02 16.64 -3.72 -0.06 -37.08 16 15 C 0.53 24.70 5.58 87.08 0.49 25.19 16 16 O -0.56 -28.91 16.45 -3.53 -0.06 -28.97 16 17 N -0.59 -20.70 2.97 -820.33 -2.43 -23.13 16 18 C 0.10 3.00 6.38 86.51 0.55 3.55 16 19 C -0.12 -2.68 5.38 30.82 0.17 -2.52 16 20 C -0.09 -1.46 2.68 -10.77 -0.03 -1.49 16 21 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 22 C -0.12 -2.37 5.36 30.67 0.16 -2.21 16 23 C 0.10 2.74 6.42 86.36 0.55 3.29 16 24 H 0.23 8.27 7.80 -4.42 -0.03 8.24 16 25 H 0.08 3.26 7.16 -2.39 -0.02 3.25 16 26 H 0.11 5.38 6.13 -2.39 -0.01 5.37 16 27 H 0.28 13.19 8.30 -92.71 -0.77 12.42 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.20 6.28 -2.39 -0.01 2.18 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.07 2.23 7.03 -2.39 -0.02 2.21 16 39 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -72.99 326.71 5.49 -67.50 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.04 Total: 23.02 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 6.43 Total: 23.08 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -3.89 Total: -89.29 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -0.12 Total: -66.05 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.74 kcal Total: -72.99 5.49 -67.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282070321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.868 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds