Wall clock time and date at job start Tue Mar 31 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00149 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47226 * 89.99205 * 10 8 6 12 12 H 1.48494 * 109.47051 * 209.99874 * 10 8 6 13 13 H 1.48508 * 109.46947 * 329.99558 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 C 1.50700 * 109.46617 * 180.02562 * 16 14 4 18 18 C 1.41385 * 128.01105 * 90.00224 * 17 16 14 19 19 C 1.50700 * 126.79944 * 359.93541 * 18 17 16 20 20 N 1.30171 * 106.39416 * 179.97438 * 18 17 16 21 21 O 1.20923 * 111.60977 * 359.97438 * 20 18 17 22 22 C 1.34044 * 111.56409 * 359.76154 * 21 20 18 23 23 C 1.50694 * 126.77538 * 180.29263 * 22 21 20 24 24 H 1.08000 * 120.00216 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 28 28 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 29 29 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 30 30 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 31 31 H 0.96995 * 120.00744 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 33 33 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 34 34 H 1.08994 * 109.46905 * 90.00571 * 19 18 17 35 35 H 1.08997 * 109.47092 * 210.00439 * 19 18 17 36 36 H 1.09000 * 109.46969 * 329.99985 * 19 18 17 37 37 H 1.09008 * 109.46646 * 270.10755 * 23 22 21 38 38 H 1.08994 * 109.47678 * 30.10558 * 23 22 21 39 39 H 1.08999 * 109.47311 * 150.11318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 1.9598 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 1.7009 6.6503 3.1609 12 1 3.1379 6.3000 5.0826 13 1 4.0635 6.2055 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 6 6.1297 -0.1384 -0.2470 18 6 6.6185 -1.4135 0.1194 19 6 5.7986 -2.6199 0.4982 20 7 7.9169 -1.3387 0.0656 21 8 8.2860 -0.2373 -0.2707 22 6 7.2494 0.5826 -0.4946 23 6 7.3166 2.0229 -0.9324 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0894 28 1 2.6213 1.4025 -0.9314 29 1 1.4887 1.6969 2.5458 30 1 3.0988 1.3606 3.2259 31 1 1.7308 3.9748 5.4295 32 1 4.0660 -0.5363 -0.6154 33 1 4.6087 1.0852 -1.1097 34 1 5.5763 -3.2032 -0.3953 35 1 6.3596 -3.2339 1.2027 36 1 4.8668 -2.2951 0.9613 37 1 7.3580 2.6679 -0.0546 38 1 8.2090 2.1771 -1.5389 39 1 6.4314 2.2657 -1.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292275638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:58 Heat of formation + Delta-G solvation = 37.851474 kcal Electronic energy + Delta-G solvation = -21925.342800 eV Core-core repulsion = 18643.939911 eV Total energy + Delta-G solvation = -3281.402890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.69989 -39.16599 -35.82562 -35.00717 -33.50725 -33.18542 -32.10005 -29.98060 -28.53078 -27.69584 -26.71563 -25.40691 -23.09312 -21.49008 -20.06488 -19.95493 -18.41705 -17.48480 -16.78896 -16.54560 -16.21548 -15.54458 -14.96122 -14.53838 -14.27221 -14.07184 -13.54780 -13.37132 -13.06753 -13.03340 -12.79378 -12.59330 -12.45134 -12.36036 -12.06389 -11.73742 -11.69642 -11.27213 -11.07245 -10.91894 -10.77880 -10.61807 -10.21093 -9.72165 -9.66303 -9.23564 -9.15803 -8.73426 -8.45593 -7.72559 -6.06400 -4.11374 1.66198 2.35898 2.42039 3.27635 3.28322 3.33743 3.35997 3.40516 4.01717 4.34558 4.42928 4.60129 4.90242 5.05027 5.06351 5.25933 5.29309 5.34516 5.35556 5.43103 5.50807 5.52228 5.59108 5.62649 5.76999 5.85213 5.92225 5.97643 6.08472 6.14875 6.30237 6.74665 6.86802 7.05941 7.42624 7.51536 7.89794 8.20922 8.36614 8.47128 8.87493 9.05619 9.53757 11.01754 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.005710 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.745597 B = 4902.433564 C = 5973.999054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.506 3.494 15 O -0.531 6.531 16 C -0.065 4.065 17 C -0.175 4.175 18 C 0.033 3.967 19 C -0.074 4.074 20 N -0.373 5.373 21 O 0.092 5.908 22 C -0.021 4.021 23 C -0.073 4.073 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 -6.999 -14.465 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.292 3.708 15 O -0.407 6.407 16 C -0.105 4.105 17 C -0.179 4.179 18 C -0.126 4.126 19 C -0.132 4.132 20 N -0.081 5.081 21 O 0.029 5.971 22 C -0.084 4.084 23 C -0.131 4.131 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.615 -7.791 -13.508 16.008 hybrid contribution -0.718 1.350 0.129 1.535 sum 2.897 -6.441 -13.379 15.129 Atomic orbital electron populations 1.23824 0.95863 1.01792 1.00421 1.23422 0.96417 0.99008 1.00049 1.20601 0.93191 0.95398 0.89693 1.48230 1.10325 1.60356 1.13617 1.19265 0.95353 0.93748 0.78734 1.21416 1.40563 0.93304 1.01227 0.92466 1.24935 0.95084 0.98735 0.95336 1.69930 1.42022 1.36159 1.05190 0.86514 0.78581 0.85034 0.77393 1.20629 1.21101 1.19895 1.20164 0.82411 0.78917 0.89297 1.90699 1.52462 1.55825 1.41716 1.20026 0.90666 1.01968 0.97882 1.20312 0.96044 0.93487 1.08090 1.23305 0.90431 0.97254 1.01584 1.20138 0.98609 0.92598 1.01849 1.73754 1.14728 1.00600 1.18980 1.84743 1.33249 1.15554 1.63603 1.24131 0.86296 0.95824 1.02169 1.20334 1.04001 0.86084 1.02636 0.88785 0.88265 0.87815 0.89379 0.90796 0.94986 0.93975 0.92707 0.88329 0.88260 0.90434 0.90611 0.90073 0.88958 0.90113 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.02 0.42 -1.77 16 2 C -0.17 -2.22 9.74 -36.02 -0.35 -2.57 16 3 C 0.14 2.02 5.65 -5.19 -0.03 1.99 16 4 N -0.59 -11.92 2.44 -176.43 -0.43 -12.35 16 5 C 0.25 6.34 5.16 -5.20 -0.03 6.32 16 6 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 10 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.51 10.05 7.66 -10.98 -0.08 9.97 16 15 O -0.53 -13.23 15.61 5.56 0.09 -13.15 16 16 C -0.06 -0.92 4.59 -29.04 -0.13 -1.05 16 17 C -0.18 -2.73 4.81 -104.42 -0.50 -3.23 16 18 C 0.03 0.53 7.33 -82.10 -0.60 -0.07 16 19 C -0.07 -0.93 10.39 36.01 0.37 -0.56 16 20 N -0.37 -6.35 12.07 33.42 0.40 -5.95 16 21 O 0.09 1.48 11.20 17.16 0.19 1.68 16 22 C -0.02 -0.31 7.49 -35.30 -0.26 -0.57 16 23 C -0.07 -0.81 10.30 36.00 0.37 -0.44 16 24 H 0.09 0.98 8.06 -52.49 -0.42 0.55 16 25 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 26 H 0.10 1.25 7.81 -52.49 -0.41 0.84 16 27 H 0.09 1.39 7.72 -51.93 -0.40 0.99 16 28 H 0.07 0.88 6.44 -51.92 -0.33 0.54 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.10 1.15 7.75 -51.93 -0.40 0.75 16 33 H 0.10 1.15 6.69 -51.93 -0.35 0.80 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.84 7.44 -51.93 -0.39 0.45 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -34.44 339.83 -5.74 -40.18 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.58 Total: -1.12 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.25 Total: -5.26 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.71 Total: -43.96 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.28 Total: -11.47 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.44 -5.74 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292275638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.035 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds