Wall clock time and date at job start Tue Mar 31 2020 01:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 119.99867 * 2 1 4 4 N 1.46499 * 109.47219 * 124.99709 * 3 2 1 5 5 C 1.46499 * 120.00136 * 269.99493 * 4 3 2 6 6 C 1.50697 * 109.47293 * 270.00491 * 5 4 3 7 7 H 1.07997 * 120.00010 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00091 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00149 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00247 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47226 * 89.99205 * 10 8 6 12 12 H 1.48494 * 109.47051 * 209.99874 * 10 8 6 13 13 H 1.48508 * 109.46947 * 329.99558 * 10 8 6 14 14 C 1.34784 * 119.99971 * 89.99688 * 4 3 2 15 15 O 1.21283 * 119.99649 * 179.97438 * 14 4 3 16 16 C 1.50697 * 119.99774 * 359.72768 * 14 4 3 17 17 C 1.50700 * 109.46617 * 180.02562 * 16 14 4 18 18 C 1.41385 * 128.01105 * 90.00224 * 17 16 14 19 19 C 1.50700 * 126.79944 * 359.93541 * 18 17 16 20 20 N 1.30171 * 106.39416 * 179.97438 * 18 17 16 21 21 O 1.20923 * 111.60977 * 359.97438 * 20 18 17 22 22 C 1.34044 * 111.56409 * 359.76154 * 21 20 18 23 23 C 1.50694 * 126.77538 * 180.29263 * 22 21 20 24 24 H 1.08000 * 120.00216 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.99875 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47074 * 4.99319 * 3 2 1 28 28 H 1.09008 * 109.46468 * 244.99290 * 3 2 1 29 29 H 1.08997 * 109.46865 * 30.00228 * 5 4 3 30 30 H 1.08998 * 109.47058 * 149.99741 * 5 4 3 31 31 H 0.96995 * 120.00744 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46809 * 299.99238 * 16 14 4 33 33 H 1.08993 * 109.47525 * 59.99679 * 16 14 4 34 34 H 1.08994 * 109.46905 * 90.00571 * 19 18 17 35 35 H 1.08997 * 109.47092 * 210.00439 * 19 18 17 36 36 H 1.09000 * 109.46969 * 329.99985 * 19 18 17 37 37 H 1.09008 * 109.46646 * 270.10755 * 23 22 21 38 38 H 1.08994 * 109.47678 * 30.10558 * 23 22 21 39 39 H 1.08999 * 109.47311 * 150.11318 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1314 5 6 2.5587 1.8652 2.4248 6 6 2.8441 3.3438 2.4802 7 1 3.3038 3.8371 1.6366 8 6 2.5192 4.0668 3.6084 9 7 1.9598 3.4661 4.6359 10 14 2.8735 5.8996 3.6774 11 1 1.7009 6.6503 3.1609 12 1 3.1379 6.3000 5.0826 13 1 4.0635 6.2055 2.8433 14 6 4.2496 0.8662 0.9825 15 8 5.0198 0.8889 1.9191 16 6 4.6951 0.3122 -0.3463 17 6 6.1297 -0.1384 -0.2470 18 6 6.6185 -1.4135 0.1194 19 6 5.7986 -2.6199 0.4982 20 7 7.9169 -1.3387 0.0656 21 8 8.2860 -0.2373 -0.2707 22 6 7.2494 0.5826 -0.4946 23 6 7.3166 2.0229 -0.9324 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0894 28 1 2.6213 1.4025 -0.9314 29 1 1.4887 1.6969 2.5458 30 1 3.0988 1.3606 3.2259 31 1 1.7308 3.9748 5.4295 32 1 4.0660 -0.5363 -0.6154 33 1 4.6087 1.0852 -1.1097 34 1 5.5763 -3.2032 -0.3953 35 1 6.3596 -3.2339 1.2027 36 1 4.8668 -2.2951 0.9613 37 1 7.3580 2.6679 -0.0546 38 1 8.2090 2.1771 -1.5389 39 1 6.4314 2.2657 -1.5202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292275638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:56 Heat of formation + Delta-G solvation = 16.285197 kcal Electronic energy + Delta-G solvation = -21926.277984 eV Core-core repulsion = 18643.939911 eV Total energy + Delta-G solvation = -3282.338073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -45.87238 -40.72361 -37.26146 -36.23983 -35.08938 -34.55512 -33.62239 -31.29899 -29.63117 -29.27040 -27.93274 -26.81045 -24.93577 -22.83684 -21.21435 -21.04090 -19.84553 -18.73189 -18.58130 -17.99705 -17.69289 -17.12260 -16.33973 -16.19986 -15.56881 -15.25804 -14.79200 -14.41525 -14.29894 -14.23494 -14.10017 -13.94414 -13.82082 -13.47517 -13.29477 -13.08074 -13.01274 -12.90656 -12.75001 -12.54581 -12.22041 -12.15604 -11.89132 -11.65051 -10.94209 -10.62825 -10.60556 -10.26580 -10.01613 -9.43269 -8.20648 -6.35140 0.50893 1.18318 1.37331 1.39552 1.40660 1.50523 1.86532 2.20774 2.37007 2.59994 3.09546 3.23921 3.54999 3.76387 3.86701 4.01414 4.17164 4.31614 4.36687 4.41679 4.50956 4.62222 4.63535 4.67064 4.75784 4.81374 4.90478 4.93954 5.05302 5.11120 5.13586 5.25081 5.29306 5.55040 5.76660 5.79672 6.00626 6.08617 6.72647 6.81550 7.30825 7.30949 7.51797 8.86559 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.005710 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.745597 B = 4902.433564 C = 5973.999054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.183 4.183 3 C 0.130 3.870 4 N -0.597 5.597 5 C 0.265 3.735 6 C -0.538 4.538 7 H 0.058 0.942 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.966 3.034 11 H -0.263 1.263 12 H -0.286 1.286 13 H -0.269 1.269 14 C 0.501 3.499 15 O -0.593 6.593 16 C -0.048 4.048 17 C -0.198 4.198 18 C 0.023 3.977 19 C -0.074 4.074 20 N -0.401 5.401 21 O 0.079 5.921 22 C -0.021 4.021 23 C -0.074 4.074 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.020 0.980 30 H -0.008 1.008 31 H 0.266 0.734 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.108 0.892 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 -6.491 -17.053 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.327 5.327 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.790 3.210 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.194 1.194 14 C 0.290 3.710 15 O -0.474 6.474 16 C -0.087 4.087 17 C -0.202 4.202 18 C -0.136 4.136 19 C -0.132 4.132 20 N -0.111 5.111 21 O 0.018 5.982 22 C -0.084 4.084 23 C -0.131 4.131 24 H 0.132 0.868 25 H 0.115 0.885 26 H 0.136 0.864 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.127 0.873 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.008 -7.281 -16.161 17.979 hybrid contribution -0.574 1.156 0.946 1.601 sum 2.434 -6.124 -15.215 16.581 Atomic orbital electron populations 1.24040 0.95746 1.02723 0.98596 1.23371 0.96725 0.98511 1.01605 1.20896 0.92808 0.96272 0.89172 1.48190 1.11607 1.59852 1.13033 1.18653 0.93674 0.92709 0.80578 1.21728 1.40244 0.94357 1.01359 0.92349 1.25868 0.94790 1.03703 0.94931 1.70061 1.43104 1.38086 1.05846 0.85439 0.79001 0.79232 0.77311 1.18751 1.21137 1.19385 1.21145 0.81384 0.77679 0.90764 1.90671 1.54096 1.58258 1.44343 1.20010 0.90201 1.03838 0.94683 1.20581 0.96894 0.93641 1.09088 1.23898 0.90455 0.98542 1.00674 1.20262 0.97825 0.91842 1.03238 1.73737 1.15560 1.01312 1.20531 1.84704 1.33899 1.15684 1.63898 1.24845 0.85903 0.96900 1.00759 1.20537 1.06601 0.83346 1.02636 0.86754 0.88525 0.86380 0.90533 0.86796 0.96243 0.99004 0.92563 0.85085 0.84726 0.87272 0.90757 0.90365 0.90382 0.87347 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 14.32 67.79 0.97 -2.80 16 2 C -0.18 -4.33 9.74 25.65 0.25 -4.08 16 3 C 0.13 3.62 5.65 85.63 0.48 4.11 16 4 N -0.60 -23.73 2.44 -830.50 -2.03 -25.75 16 5 C 0.27 14.03 5.16 85.63 0.44 14.47 16 6 C -0.54 -30.26 9.39 25.60 0.24 -30.02 16 7 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 10 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 11 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 14 C 0.50 19.63 7.66 87.65 0.67 20.30 16 15 O -0.59 -30.44 15.61 -3.04 -0.05 -30.49 16 16 C -0.05 -1.22 4.59 29.10 0.13 -1.08 16 17 C -0.20 -5.85 4.81 -19.73 -0.10 -5.95 16 18 C 0.02 0.72 7.33 43.58 0.32 1.04 16 19 C -0.07 -1.77 10.39 71.24 0.74 -1.03 16 20 N -0.40 -13.62 12.07 -49.55 -0.60 -14.22 16 21 O 0.08 2.52 11.20 71.59 0.80 3.32 16 22 C -0.02 -0.59 7.49 25.04 0.19 -0.40 16 23 C -0.07 -1.49 10.30 71.23 0.73 -0.75 16 24 H 0.11 2.03 8.06 -2.91 -0.02 2.01 16 25 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 26 H 0.12 2.47 7.81 -2.91 -0.02 2.44 16 27 H 0.08 2.31 7.72 -2.39 -0.02 2.29 16 28 H 0.11 2.23 6.44 -2.38 -0.02 2.21 16 29 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 30 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.13 2.52 7.75 -2.39 -0.02 2.50 16 33 H 0.13 2.49 6.69 -2.39 -0.02 2.47 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.71 7.44 -2.39 -0.02 1.69 16 Total: -1.00 -78.91 339.83 7.02 -71.90 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.04 Total: 10.43 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.54 Total: -5.41 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -2.34 Total: -95.98 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.75 Total: -27.16 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -78.91 7.02 -71.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292275638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.181 kcal (2) G-P(sol) polarization free energy of solvation -78.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds