Wall clock time and date at job start Tue Mar 31 2020 00:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37943 * 119.40842 * 2 1 4 4 C 1.39187 * 119.23484 * 179.68057 * 3 2 1 5 5 O 1.35510 * 120.93213 * 180.30423 * 4 3 2 6 6 C 1.40702 * 118.13747 * 0.55653 * 4 3 2 7 7 C 1.47556 * 120.61363 * 179.73634 * 6 4 3 8 8 O 1.21588 * 119.99990 * 359.72740 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.72811 * 7 6 4 10 10 C 1.46496 * 119.99614 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47322 * 299.99616 * 11 10 9 13 13 C 1.53005 * 109.47179 * 60.00142 * 11 10 9 14 14 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00213 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99763 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47176 * 90.00370 * 18 16 14 20 20 H 1.48502 * 109.47120 * 209.99581 * 18 16 14 21 21 H 1.48494 * 109.47357 * 330.00300 * 18 16 14 22 22 C 1.39496 * 118.76912 * 359.47008 * 6 4 3 23 23 N 1.31664 * 120.61453 * 0.24461 * 22 6 4 24 24 H 1.09000 * 109.46884 * 270.02227 * 1 2 3 25 25 H 1.08996 * 109.47204 * 30.01498 * 1 2 3 26 26 H 1.08997 * 109.47348 * 150.02053 * 1 2 3 27 27 H 1.08002 * 120.38590 * 359.97438 * 3 2 1 28 28 H 0.96706 * 113.99380 * 270.26663 * 5 4 3 29 29 H 0.96996 * 119.99887 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47287 * 299.99298 * 10 9 7 31 31 H 1.09002 * 109.47320 * 59.99900 * 10 9 7 32 32 H 1.09002 * 109.47051 * 60.00463 * 12 11 10 33 33 H 1.09005 * 109.47120 * 179.97438 * 12 11 10 34 34 H 1.08994 * 109.47233 * 300.00059 * 12 11 10 35 35 H 1.09000 * 109.47317 * 60.00013 * 13 11 10 36 36 H 1.08995 * 109.46937 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46811 * 299.99946 * 13 11 10 38 38 H 0.96999 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.69533 * 180.27431 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.2017 0.0000 4 6 3.5762 1.1975 0.0068 5 8 4.2763 2.3577 0.0132 6 6 4.2360 -0.0452 0.0013 7 6 5.7100 -0.1134 0.0022 8 8 6.3660 0.9104 0.0027 9 7 6.3292 -1.3105 0.0025 10 6 7.7926 -1.3781 0.0039 11 6 8.2354 -2.8426 0.0046 12 6 7.6915 -3.5394 1.2534 13 6 7.6939 -3.5398 -1.2451 14 6 9.7409 -2.9123 0.0055 15 1 10.3235 -2.0029 0.0059 16 6 10.3743 -4.1369 0.0056 17 7 9.6648 -5.2443 0.0045 18 14 12.2403 -4.2232 0.0060 19 1 12.7345 -4.2461 1.4061 20 1 12.6789 -5.4574 -0.6939 21 1 12.7909 -3.0349 -0.6939 22 6 3.4709 -1.2116 0.0008 23 7 2.1557 -1.1507 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6410 2.1351 -0.0004 28 1 4.4802 2.6988 -0.8685 29 1 5.8059 -2.1272 0.0025 30 1 8.1802 -0.8815 -0.8856 31 1 8.1784 -0.8819 0.8944 32 1 6.6027 -3.4891 1.2524 33 1 8.0066 -4.5829 1.2537 34 1 8.0773 -3.0428 2.1437 35 1 8.0814 -3.0435 -2.1348 36 1 8.0090 -4.5832 -1.2444 37 1 6.6050 -3.4894 -1.2462 38 1 10.1104 -6.1059 0.0050 39 1 3.9619 -2.1736 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315389329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:40 Heat of formation + Delta-G solvation = -52.475488 kcal Electronic energy + Delta-G solvation = -21542.341519 eV Core-core repulsion = 18257.021758 eV Total energy + Delta-G solvation = -3285.319760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88222 -38.87659 -37.58191 -36.28925 -33.62007 -32.83882 -31.38305 -30.80416 -28.33773 -25.74878 -25.61670 -24.90441 -23.94090 -22.56560 -20.47426 -18.96609 -18.33830 -17.65741 -17.02630 -15.92427 -15.74340 -15.08207 -14.85397 -14.80212 -14.45500 -14.35566 -14.00899 -13.24651 -13.00929 -12.90518 -12.90378 -12.60125 -12.40544 -12.20325 -11.40950 -11.22364 -11.02615 -10.88284 -10.70819 -10.41022 -10.23247 -10.09559 -9.66074 -9.64099 -9.48578 -9.25717 -9.21859 -8.81102 -8.48074 -8.33841 -6.03418 -4.13640 0.50084 0.90778 2.98923 3.27838 3.34909 3.38212 3.56822 3.65554 3.87817 3.98688 4.39084 4.48649 4.72726 4.92984 5.08303 5.18042 5.23432 5.28858 5.38028 5.58423 5.72489 5.84166 6.20201 6.28535 6.29456 6.48273 6.73279 6.79595 6.90410 6.96234 6.99502 7.32772 7.42636 7.53621 7.67823 7.69073 7.96482 7.98989 8.12503 8.36218 8.59849 8.86876 9.52337 10.98021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.003800 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.525414 B = 7366.868881 C = 7989.529327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.213 4.213 4 C 0.213 3.787 5 O -0.471 6.471 6 C -0.218 4.218 7 C 0.552 3.448 8 O -0.533 6.533 9 N -0.710 5.710 10 C 0.132 3.868 11 C 0.055 3.945 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.507 4.507 15 H 0.058 0.942 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.894 3.106 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.157 3.843 23 N -0.494 5.494 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.402 0.598 29 H 0.396 0.604 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.005 0.995 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.005 0.995 38 H 0.260 0.740 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 8.484 -1.704 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.021 3.979 3 C -0.233 4.233 4 C 0.158 3.842 5 O -0.283 6.283 6 C -0.224 4.224 7 C 0.337 3.663 8 O -0.412 6.412 9 N -0.362 5.362 10 C 0.010 3.990 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.545 4.545 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.722 3.278 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.002 4.002 23 N -0.205 5.205 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.163 0.837 28 H 0.261 0.739 29 H 0.232 0.768 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.636 8.205 -1.115 18.583 hybrid contribution 1.388 0.349 -0.421 1.492 sum -15.248 8.554 -1.536 17.551 Atomic orbital electron populations 1.20778 0.88281 1.03793 1.03479 1.21347 0.97324 0.87671 0.91587 1.22260 0.93563 1.00318 1.07173 1.18784 0.89242 0.85401 0.90749 1.84674 1.74483 1.35348 1.33757 1.21707 0.96087 0.94796 1.09799 1.17821 0.85997 0.84539 0.77972 1.90777 1.66356 1.33995 1.50037 1.46262 1.09719 1.07103 1.73069 1.21770 0.75841 1.00649 1.00702 1.18373 0.95728 0.87545 0.92892 1.21840 0.94971 1.04500 0.97601 1.21838 0.94947 1.04521 0.97565 1.20975 0.89988 0.92592 1.50967 0.92398 1.24876 0.98195 0.95660 0.94753 1.69799 1.34720 0.97378 1.50492 0.86565 0.85648 0.77504 0.78118 1.20707 1.21264 1.19905 1.23005 0.88992 0.97554 0.90689 1.67543 1.09636 1.28858 1.14460 0.89929 0.90462 0.90003 0.83740 0.73886 0.76776 0.92483 0.92478 0.97566 0.89506 0.95358 0.95377 0.89496 0.97576 0.92975 0.81819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 36.01 0.37 -0.37 16 2 C 0.16 1.67 6.77 -82.59 -0.56 1.11 16 3 C -0.21 -2.22 9.68 -39.34 -0.38 -2.61 16 4 C 0.21 2.80 6.78 -38.30 -0.26 2.54 16 5 O -0.47 -6.19 11.75 -39.47 -0.46 -6.66 16 6 C -0.22 -3.21 5.90 -104.70 -0.62 -3.82 16 7 C 0.55 9.86 7.77 -12.46 -0.10 9.77 16 8 O -0.53 -11.12 15.29 -15.96 -0.24 -11.37 16 9 N -0.71 -12.70 4.91 -61.35 -0.30 -13.00 16 10 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 11 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 14 C -0.51 -13.18 8.01 -34.44 -0.28 -13.45 16 15 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 17 N -0.89 -23.41 9.35 55.43 0.52 -22.89 16 18 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.16 2.07 10.71 -17.15 -0.18 1.88 16 23 N -0.49 -6.29 10.25 -9.21 -0.09 -6.39 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.40 3.60 9.06 45.56 0.41 4.01 16 29 H 0.40 6.35 4.23 -40.82 -0.17 6.18 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 37 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.16 1.92 6.42 -52.48 -0.34 1.58 16 LS Contribution 321.12 15.07 4.84 4.84 Total: -1.00 -30.66 321.12 -6.72 -37.38 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.36 Total: 7.05 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.60 Total: -4.58 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.12 Total: -42.28 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.71 Total: -18.02 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.66 -6.72 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315389329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.092 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds