Wall clock time and date at job start Tue Mar 31 2020 00:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37943 * 119.40842 * 2 1 4 4 C 1.39187 * 119.23484 * 179.68057 * 3 2 1 5 5 O 1.35510 * 120.93213 * 180.30423 * 4 3 2 6 6 C 1.40702 * 118.13747 * 0.55653 * 4 3 2 7 7 C 1.47556 * 120.61363 * 179.73634 * 6 4 3 8 8 O 1.21588 * 119.99990 * 359.72740 * 7 6 4 9 9 N 1.34777 * 119.99832 * 179.72811 * 7 6 4 10 10 C 1.46496 * 119.99614 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46851 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47322 * 299.99616 * 11 10 9 13 13 C 1.53005 * 109.47179 * 60.00142 * 11 10 9 14 14 C 1.50706 * 109.47348 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99758 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00102 * 180.02562 * 14 11 10 17 17 N 1.31516 * 120.00213 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99763 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47176 * 90.00370 * 18 16 14 20 20 H 1.48502 * 109.47120 * 209.99581 * 18 16 14 21 21 H 1.48494 * 109.47357 * 330.00300 * 18 16 14 22 22 C 1.39496 * 118.76912 * 359.47008 * 6 4 3 23 23 N 1.31664 * 120.61453 * 0.24461 * 22 6 4 24 24 H 1.09000 * 109.46884 * 270.02227 * 1 2 3 25 25 H 1.08996 * 109.47204 * 30.01498 * 1 2 3 26 26 H 1.08997 * 109.47348 * 150.02053 * 1 2 3 27 27 H 1.08002 * 120.38590 * 359.97438 * 3 2 1 28 28 H 0.96706 * 113.99380 * 270.26663 * 5 4 3 29 29 H 0.96996 * 119.99887 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47287 * 299.99298 * 10 9 7 31 31 H 1.09002 * 109.47320 * 59.99900 * 10 9 7 32 32 H 1.09002 * 109.47051 * 60.00463 * 12 11 10 33 33 H 1.09005 * 109.47120 * 179.97438 * 12 11 10 34 34 H 1.08994 * 109.47233 * 300.00059 * 12 11 10 35 35 H 1.09000 * 109.47317 * 60.00013 * 13 11 10 36 36 H 1.08995 * 109.46937 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.46811 * 299.99946 * 13 11 10 38 38 H 0.96999 * 120.00124 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.69533 * 180.27431 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.2017 0.0000 4 6 3.5762 1.1975 0.0068 5 8 4.2763 2.3577 0.0132 6 6 4.2360 -0.0452 0.0013 7 6 5.7100 -0.1134 0.0022 8 8 6.3660 0.9104 0.0027 9 7 6.3292 -1.3105 0.0025 10 6 7.7926 -1.3781 0.0039 11 6 8.2354 -2.8426 0.0046 12 6 7.6915 -3.5394 1.2534 13 6 7.6939 -3.5398 -1.2451 14 6 9.7409 -2.9123 0.0055 15 1 10.3235 -2.0029 0.0059 16 6 10.3743 -4.1369 0.0056 17 7 9.6648 -5.2443 0.0045 18 14 12.2403 -4.2232 0.0060 19 1 12.7345 -4.2461 1.4061 20 1 12.6789 -5.4574 -0.6939 21 1 12.7909 -3.0349 -0.6939 22 6 3.4709 -1.2116 0.0008 23 7 2.1557 -1.1507 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5140 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6410 2.1351 -0.0004 28 1 4.4802 2.6988 -0.8685 29 1 5.8059 -2.1272 0.0025 30 1 8.1802 -0.8815 -0.8856 31 1 8.1784 -0.8819 0.8944 32 1 6.6027 -3.4891 1.2524 33 1 8.0066 -4.5829 1.2537 34 1 8.0773 -3.0428 2.1437 35 1 8.0814 -3.0435 -2.1348 36 1 8.0090 -4.5832 -1.2444 37 1 6.6050 -3.4894 -1.2462 38 1 10.1104 -6.1059 0.0050 39 1 3.9619 -2.1736 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315389329.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:39 Heat of formation + Delta-G solvation = -72.978980 kcal Electronic energy + Delta-G solvation = -21543.230617 eV Core-core repulsion = 18257.021758 eV Total energy + Delta-G solvation = -3286.208859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91952 -40.24269 -38.60778 -37.97086 -35.13872 -33.98279 -32.65656 -32.22922 -29.24958 -27.57454 -27.42685 -26.59168 -24.92366 -23.59432 -21.80195 -20.67298 -19.48331 -18.86994 -18.04537 -17.76728 -16.82017 -16.59337 -16.42651 -16.18730 -15.71091 -15.39501 -14.91239 -14.77665 -14.54516 -14.49628 -13.98833 -13.82170 -13.26139 -13.14117 -13.10938 -13.09460 -12.69345 -12.60224 -12.26227 -12.15223 -12.01994 -11.49827 -11.36642 -11.09390 -10.73410 -10.62291 -10.51993 -10.40346 -10.20954 -9.90727 -8.02435 -6.18286 -0.48989 -0.00133 1.42738 1.45717 1.53762 1.79767 2.17767 2.47920 2.62572 2.93833 3.13705 3.21265 3.64431 3.71988 3.88698 4.23740 4.40010 4.43741 4.49444 4.55237 4.69963 4.82375 4.88702 4.96169 4.99104 5.04079 5.10685 5.14144 5.18248 5.32076 5.49623 5.53788 5.66319 5.67226 6.14006 6.20260 6.42597 6.55528 6.60913 6.78606 6.85523 7.19327 7.49486 8.96532 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.003800 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.525414 B = 7366.868881 C = 7989.529327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.202 4.202 4 C 0.205 3.795 5 O -0.487 6.487 6 C -0.243 4.243 7 C 0.554 3.446 8 O -0.570 6.570 9 N -0.705 5.705 10 C 0.149 3.851 11 C 0.051 3.949 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.045 0.955 16 C 0.029 3.971 17 N -0.898 5.898 18 Si 0.945 3.055 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.275 1.275 22 C 0.159 3.841 23 N -0.510 5.510 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.178 0.822 28 H 0.416 0.584 29 H 0.406 0.594 30 H 0.043 0.957 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 8.984 -1.814 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.222 4.222 4 C 0.151 3.849 5 O -0.301 6.301 6 C -0.249 4.249 7 C 0.341 3.659 8 O -0.451 6.451 9 N -0.357 5.357 10 C 0.025 3.975 11 C 0.050 3.950 12 C -0.180 4.180 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.772 3.228 19 H -0.206 1.206 20 H -0.208 1.208 21 H -0.200 1.200 22 C 0.000 4.000 23 N -0.221 5.221 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.195 0.805 28 H 0.278 0.722 29 H 0.244 0.756 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.994 8.695 -1.235 20.926 hybrid contribution 2.002 0.249 -0.389 2.054 sum -16.993 8.944 -1.624 19.271 Atomic orbital electron populations 1.20932 0.85320 1.05232 1.04694 1.22057 0.99189 0.87097 0.89253 1.22535 0.92243 1.01744 1.05712 1.19050 0.90387 0.84825 0.90664 1.84625 1.74823 1.35352 1.35281 1.21483 0.93825 0.96387 1.13228 1.18272 0.87416 0.83638 0.76560 1.90748 1.67555 1.35050 1.51702 1.46052 1.08304 1.07950 1.73381 1.21324 0.77846 0.99054 0.99227 1.18369 0.94393 0.88684 0.93527 1.21688 0.96820 1.02641 0.96825 1.21678 0.96837 1.02619 0.96752 1.21267 0.91879 0.92303 1.51381 0.93652 1.25446 1.01505 0.95506 0.94653 1.69903 1.35722 0.97489 1.50575 0.85755 0.81722 0.77342 0.77958 1.20573 1.20807 1.20048 1.23109 0.89360 0.97386 0.90137 1.67647 1.09161 1.30045 1.15275 0.88575 0.87737 0.89923 0.80460 0.72184 0.75587 0.93840 0.94214 0.94559 0.91736 0.96328 0.96129 0.91776 0.94506 0.93001 0.80983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.16 71.24 0.72 -0.30 16 2 C 0.16 2.90 6.77 42.45 0.29 3.19 16 3 C -0.20 -3.60 9.68 22.43 0.22 -3.39 16 4 C 0.20 5.08 6.78 23.10 0.16 5.24 16 5 O -0.49 -12.33 11.75 -67.80 -0.80 -13.13 16 6 C -0.24 -6.93 5.90 -19.91 -0.12 -7.05 16 7 C 0.55 19.79 7.77 86.70 0.67 20.46 16 8 O -0.57 -24.14 15.29 16.32 0.25 -23.89 16 9 N -0.71 -25.02 4.91 -466.26 -2.29 -27.31 16 10 C 0.15 6.39 4.50 86.38 0.39 6.78 16 11 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 12 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 13 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 14 C -0.53 -28.04 8.01 25.60 0.21 -27.83 16 15 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 16 C 0.03 1.52 5.15 84.65 0.44 1.95 16 17 N -0.90 -47.77 9.35 21.45 0.20 -47.57 16 18 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C 0.16 3.96 10.71 85.02 0.91 4.87 16 23 N -0.51 -11.82 10.25 -183.05 -1.88 -13.70 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.42 7.16 9.06 -74.05 -0.67 6.49 16 29 H 0.41 12.55 4.23 -92.71 -0.39 12.16 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 33 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 34 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 37 H 0.04 1.35 6.86 -2.39 -0.02 1.33 16 38 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 39 H 0.17 3.76 6.42 -2.91 -0.02 3.74 16 Total: -1.00 -66.37 321.12 2.56 -63.81 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.03 Total: 20.52 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.02 Total: -3.38 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.97 Total: -88.58 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.55 Total: -37.02 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.37 2.56 -63.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315389329.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.170 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds