Wall clock time and date at job start Tue Mar 31 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99683 * 2 1 4 4 C 1.53007 * 109.46737 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47277 * 65.00548 * 4 3 2 6 6 C 1.36786 * 119.99378 * 270.00050 * 5 4 3 7 7 H 1.08006 * 119.99922 * 139.21772 * 6 5 4 8 8 C 1.39104 * 120.00139 * 319.20748 * 6 5 4 9 9 N 1.31327 * 119.99950 * 163.51685 * 8 6 5 10 10 Si 1.86802 * 120.00033 * 343.52724 * 8 6 5 11 11 H 1.48497 * 109.47461 * 95.98862 * 10 8 6 12 12 H 1.48507 * 109.46930 * 215.98502 * 10 8 6 13 13 H 1.48501 * 109.47059 * 335.98346 * 10 8 6 14 14 C 1.34771 * 120.00520 * 89.99576 * 5 4 3 15 15 O 1.21569 * 119.99987 * 354.94633 * 14 5 4 16 16 C 1.48004 * 119.99911 * 174.94295 * 14 5 4 17 17 C 1.39419 * 119.72920 * 177.51944 * 16 14 5 18 18 C 1.38536 * 119.05185 * 179.97438 * 17 16 14 19 19 C 1.50707 * 120.74995 * 179.97438 * 18 17 16 20 20 C 1.38662 * 118.50085 * 359.97438 * 18 17 16 21 21 C 1.38550 * 119.36859 * 0.02562 * 20 18 17 22 22 C 1.50702 * 119.54701 * 180.02562 * 21 20 18 23 23 N 1.31532 * 120.91223 * 359.74042 * 21 20 18 24 24 H 1.08991 * 109.47374 * 299.99697 * 1 2 3 25 25 H 1.09000 * 109.47035 * 59.99844 * 1 2 3 26 26 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47254 * 60.00036 * 3 2 1 28 28 H 1.08994 * 109.47614 * 299.99713 * 3 2 1 29 29 H 1.08999 * 109.47128 * 304.99938 * 4 3 2 30 30 H 1.09001 * 109.46613 * 184.99770 * 4 3 2 31 31 H 0.97007 * 119.99577 * 185.02174 * 9 8 6 32 32 H 1.08005 * 120.47110 * 0.02562 * 17 16 14 33 33 H 1.09004 * 109.46793 * 89.99719 * 19 18 17 34 34 H 1.09000 * 109.47041 * 210.00037 * 19 18 17 35 35 H 1.08995 * 109.46763 * 329.99957 * 19 18 17 36 36 H 1.08003 * 120.31578 * 179.97438 * 20 18 17 37 37 H 1.08995 * 109.46850 * 84.87069 * 22 21 20 38 38 H 1.08996 * 109.47588 * 204.87629 * 22 21 20 39 39 H 1.09004 * 109.46723 * 324.87574 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.0966 -0.7954 -1.3368 7 1 3.7728 -1.3122 -2.2282 8 6 4.6367 -1.5126 -0.2744 9 7 4.4637 -2.8126 -0.2043 10 14 5.6078 -0.6268 1.0529 11 1 4.7154 -0.3241 2.2006 12 1 6.7251 -1.4919 1.5095 13 1 6.1550 0.6399 0.5038 14 6 4.2615 1.3338 -2.3218 15 8 4.0666 2.5330 -2.2773 16 6 4.8126 0.7187 -3.5500 17 6 5.0575 1.5116 -4.6703 18 6 5.5740 0.9214 -5.8123 19 6 5.8528 1.7421 -7.0452 20 6 5.8286 -0.4415 -5.7954 21 6 5.5610 -1.1686 -4.6467 22 6 5.8367 -2.6500 -4.6238 23 7 5.0749 -0.5827 -3.5741 24 1 -0.3633 0.5137 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9784 2.1766 0.0889 31 1 4.7768 -3.3023 0.5723 32 1 4.8484 2.5710 -4.6479 33 1 6.8737 2.1223 -7.0053 34 1 5.7314 1.1193 -7.9314 35 1 5.1552 2.5783 -7.0903 36 1 6.2309 -0.9319 -6.6696 37 1 6.8825 -2.8209 -4.3687 38 1 5.1986 -3.1269 -3.8799 39 1 5.6285 -3.0735 -5.6063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316941254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:11 Heat of formation + Delta-G solvation = -19.500383 kcal Electronic energy + Delta-G solvation = -22425.605747 eV Core-core repulsion = 19141.715894 eV Total energy + Delta-G solvation = -3283.889853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94816 -38.42804 -36.94494 -34.87939 -33.61394 -32.08288 -31.85583 -29.37888 -27.48169 -26.97026 -25.85985 -24.94348 -23.60585 -21.94322 -20.59806 -19.06145 -17.44790 -16.55530 -15.99431 -15.65912 -15.42947 -15.11571 -14.57093 -14.37045 -14.28535 -14.09326 -13.44052 -13.22484 -12.99667 -12.70698 -12.44363 -12.37900 -12.19752 -11.92407 -11.67024 -11.60803 -11.46619 -11.28983 -11.12176 -10.84133 -10.75030 -10.09380 -9.86551 -9.16063 -9.08247 -8.94564 -8.88017 -8.32313 -8.22518 -7.59627 -6.22637 -3.74001 1.39651 1.85745 3.12251 3.27563 3.32781 3.65682 4.17659 4.26781 4.46296 4.67208 4.89737 5.01717 5.14046 5.36581 5.49748 5.60975 5.66606 5.67786 5.70277 5.77239 5.81294 5.86954 5.95428 5.97692 6.04828 6.08567 6.13255 6.19959 6.24803 6.28848 6.44401 6.55889 6.74053 6.80460 7.30095 7.40380 7.82343 8.19976 8.60742 8.74235 9.13600 9.44914 9.71209 10.83742 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.007201 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.182528 B = 3887.478843 C = 4545.574732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.056 3.944 4 C 0.097 3.903 5 N -0.425 5.425 6 C -0.273 4.273 7 H 0.131 0.869 8 C 0.068 3.932 9 N -0.855 5.855 10 Si 0.869 3.131 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.266 1.266 14 C 0.500 3.500 15 O -0.607 6.607 16 C 0.117 3.883 17 C -0.141 4.141 18 C -0.062 4.062 19 C -0.108 4.108 20 C -0.179 4.179 21 C 0.117 3.883 22 C -0.100 4.100 23 N -0.405 5.405 24 H 0.030 0.970 25 H 0.032 0.968 26 H 0.081 0.919 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.272 0.728 32 H 0.135 0.865 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 3.589 -6.710 7.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.021 4.021 4 C -0.025 4.025 5 N -0.141 5.141 6 C -0.402 4.402 7 H 0.148 0.852 8 C -0.138 4.138 9 N -0.492 5.492 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.190 1.190 14 C 0.291 3.709 15 O -0.494 6.494 16 C -0.022 4.022 17 C -0.163 4.163 18 C -0.070 4.070 19 C -0.165 4.165 20 C -0.200 4.200 21 C -0.022 4.022 22 C -0.158 4.158 23 N -0.117 5.117 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.472 3.321 -5.813 6.711 hybrid contribution 0.495 0.978 0.137 1.105 sum 0.023 4.300 -5.676 7.121 Atomic orbital electron populations 1.22654 0.82975 1.02122 0.98713 1.88220 1.17728 1.26511 1.95016 1.22813 0.94536 0.85326 0.99465 1.21835 0.92639 0.99017 0.89051 1.43724 1.53736 1.07694 1.08945 1.19542 1.36966 0.78163 1.05527 0.85193 1.25297 0.96050 0.95068 0.97402 1.69587 1.43603 1.06898 1.29106 0.87057 0.80480 0.80452 0.82215 1.20250 1.21581 1.19029 1.17994 0.83018 0.85310 0.84546 1.90605 1.60478 1.14452 1.83907 1.21199 0.97386 0.89736 0.93873 1.21871 1.00552 1.01350 0.92499 1.20112 0.97217 0.94150 0.95528 1.20727 1.02064 0.99249 0.94440 1.21875 1.04109 0.94106 0.99887 1.21623 0.94105 0.97268 0.89227 1.20658 1.02713 0.89827 1.02552 1.68747 1.08250 1.09869 1.24811 0.95192 0.94914 0.90046 0.93758 0.93096 0.90723 0.89588 0.91786 0.84683 0.91124 0.91547 0.91380 0.85813 0.91092 0.89400 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.36 -7.76 10.18 -35.23 -0.36 -8.12 16 3 C 0.06 1.14 6.28 37.16 0.23 1.37 16 4 C 0.10 2.22 4.51 -4.04 -0.02 2.20 16 5 N -0.42 -10.77 2.12 -115.83 -0.25 -11.02 16 6 C -0.27 -7.35 7.43 -15.02 -0.11 -7.46 16 7 H 0.13 3.77 6.28 -52.48 -0.33 3.44 16 8 C 0.07 1.86 5.38 -17.45 -0.09 1.76 16 9 N -0.86 -23.92 13.95 55.50 0.77 -23.14 16 10 Si 0.87 21.15 24.79 -169.99 -4.21 16.94 16 11 H -0.28 -6.43 6.79 56.52 0.38 -6.04 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.56 7.06 56.52 0.40 -6.16 16 14 C 0.50 12.56 7.61 -12.26 -0.09 12.47 16 15 O -0.61 -15.59 15.96 5.31 0.08 -15.50 16 16 C 0.12 2.68 6.65 -83.01 -0.55 2.13 16 17 C -0.14 -2.74 9.34 -39.03 -0.36 -3.11 16 18 C -0.06 -1.00 5.91 -104.35 -0.62 -1.62 16 19 C -0.11 -1.25 10.06 36.01 0.36 -0.89 16 20 C -0.18 -2.86 9.47 -39.31 -0.37 -3.24 16 21 C 0.12 2.22 6.78 -82.60 -0.56 1.66 16 22 C -0.10 -1.62 10.14 36.01 0.37 -1.25 16 23 N -0.40 -9.28 6.33 -6.07 -0.04 -9.32 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.75 3.27 -51.93 -0.17 1.58 16 30 H 0.09 1.86 7.50 -51.93 -0.39 1.47 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.14 2.51 7.64 -52.48 -0.40 2.11 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -31.58 325.37 -5.32 -36.89 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.51 Total: 2.69 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.71 Total: 5.68 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.49 Total: -43.48 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.27 Total: -23.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.21 Total: 16.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.58 -5.32 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316941254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.392 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds