Wall clock time and date at job start Tue Mar 31 2020 00:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99683 * 2 1 4 4 C 1.53007 * 109.46737 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47277 * 65.00548 * 4 3 2 6 6 C 1.36786 * 119.99378 * 270.00050 * 5 4 3 7 7 H 1.08006 * 119.99922 * 139.21772 * 6 5 4 8 8 C 1.39104 * 120.00139 * 319.20748 * 6 5 4 9 9 N 1.31327 * 119.99950 * 163.51685 * 8 6 5 10 10 Si 1.86802 * 120.00033 * 343.52724 * 8 6 5 11 11 H 1.48497 * 109.47461 * 95.98862 * 10 8 6 12 12 H 1.48507 * 109.46930 * 215.98502 * 10 8 6 13 13 H 1.48501 * 109.47059 * 335.98346 * 10 8 6 14 14 C 1.34771 * 120.00520 * 89.99576 * 5 4 3 15 15 O 1.21569 * 119.99987 * 354.94633 * 14 5 4 16 16 C 1.48004 * 119.99911 * 174.94295 * 14 5 4 17 17 C 1.39419 * 119.72920 * 177.51944 * 16 14 5 18 18 C 1.38536 * 119.05185 * 179.97438 * 17 16 14 19 19 C 1.50707 * 120.74995 * 179.97438 * 18 17 16 20 20 C 1.38662 * 118.50085 * 359.97438 * 18 17 16 21 21 C 1.38550 * 119.36859 * 0.02562 * 20 18 17 22 22 C 1.50702 * 119.54701 * 180.02562 * 21 20 18 23 23 N 1.31532 * 120.91223 * 359.74042 * 21 20 18 24 24 H 1.08991 * 109.47374 * 299.99697 * 1 2 3 25 25 H 1.09000 * 109.47035 * 59.99844 * 1 2 3 26 26 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47254 * 60.00036 * 3 2 1 28 28 H 1.08994 * 109.47614 * 299.99713 * 3 2 1 29 29 H 1.08999 * 109.47128 * 304.99938 * 4 3 2 30 30 H 1.09001 * 109.46613 * 184.99770 * 4 3 2 31 31 H 0.97007 * 119.99577 * 185.02174 * 9 8 6 32 32 H 1.08005 * 120.47110 * 0.02562 * 17 16 14 33 33 H 1.09004 * 109.46793 * 89.99719 * 19 18 17 34 34 H 1.09000 * 109.47041 * 210.00037 * 19 18 17 35 35 H 1.08995 * 109.46763 * 329.99957 * 19 18 17 36 36 H 1.08003 * 120.31578 * 179.97438 * 20 18 17 37 37 H 1.08995 * 109.46850 * 84.87069 * 22 21 20 38 38 H 1.08996 * 109.47588 * 204.87629 * 22 21 20 39 39 H 1.09004 * 109.46723 * 324.87574 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5646 -1.2528 6 6 4.0966 -0.7954 -1.3368 7 1 3.7728 -1.3122 -2.2282 8 6 4.6367 -1.5126 -0.2744 9 7 4.4637 -2.8126 -0.2043 10 14 5.6078 -0.6268 1.0529 11 1 4.7154 -0.3241 2.2006 12 1 6.7251 -1.4919 1.5095 13 1 6.1550 0.6399 0.5038 14 6 4.2615 1.3338 -2.3218 15 8 4.0666 2.5330 -2.2773 16 6 4.8126 0.7187 -3.5500 17 6 5.0575 1.5116 -4.6703 18 6 5.5740 0.9214 -5.8123 19 6 5.8528 1.7421 -7.0452 20 6 5.8286 -0.4415 -5.7954 21 6 5.5610 -1.1686 -4.6467 22 6 5.8367 -2.6500 -4.6238 23 7 5.0749 -0.5827 -3.5741 24 1 -0.3633 0.5137 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9784 2.1766 0.0889 31 1 4.7768 -3.3023 0.5723 32 1 4.8484 2.5710 -4.6479 33 1 6.8737 2.1223 -7.0053 34 1 5.7314 1.1193 -7.9314 35 1 5.1552 2.5783 -7.0903 36 1 6.2309 -0.9319 -6.6696 37 1 6.8825 -2.8209 -4.3687 38 1 5.1986 -3.1269 -3.8799 39 1 5.6285 -3.0735 -5.6063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316941254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:10 Heat of formation + Delta-G solvation = -40.653576 kcal Electronic energy + Delta-G solvation = -22426.523018 eV Core-core repulsion = 19141.715894 eV Total energy + Delta-G solvation = -3284.807124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.57312 -40.15105 -38.57127 -36.78088 -34.95268 -33.85520 -33.58158 -31.04810 -28.80594 -28.20957 -27.27963 -26.88076 -25.26444 -23.57940 -22.00108 -20.90394 -19.28535 -18.26594 -17.72859 -17.22656 -16.86800 -16.63272 -16.35587 -16.04393 -16.01776 -15.66519 -14.99231 -14.79002 -14.42591 -14.25348 -14.04303 -13.66264 -13.57526 -13.33601 -13.25301 -13.12308 -12.92212 -12.85436 -12.64344 -12.43204 -12.33948 -11.93948 -11.72435 -11.11331 -10.84666 -10.52202 -10.29530 -10.01891 -9.80796 -9.46634 -8.24715 -5.81485 -0.13635 0.45009 1.18278 1.29705 1.37036 1.90179 2.24256 2.47375 2.93319 3.01090 3.18980 3.54200 3.82051 3.89657 4.06413 4.12375 4.19759 4.25380 4.34941 4.42897 4.53683 4.55700 4.62398 4.67566 4.73909 4.77355 4.83498 4.84738 4.86236 4.90095 5.07452 5.27733 5.36968 5.42409 5.48934 5.89637 6.21839 6.38027 6.53799 7.00705 7.28554 7.47784 7.74325 8.84938 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.007201 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.182528 B = 3887.478843 C = 4545.574732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.088 3.912 5 N -0.440 5.440 6 C -0.264 4.264 7 H 0.101 0.899 8 C 0.030 3.970 9 N -0.897 5.897 10 Si 0.915 3.085 11 H -0.259 1.259 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.498 3.502 15 O -0.619 6.619 16 C 0.075 3.925 17 C -0.145 4.145 18 C -0.054 4.054 19 C -0.105 4.105 20 C -0.154 4.154 21 C 0.094 3.906 22 C -0.094 4.094 23 N -0.446 5.446 24 H 0.058 0.942 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.272 0.728 32 H 0.138 0.862 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 4.598 -8.878 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.316 6.316 3 C -0.015 4.015 4 C -0.034 4.034 5 N -0.157 5.157 6 C -0.394 4.394 7 H 0.118 0.882 8 C -0.172 4.172 9 N -0.536 5.536 10 Si 0.743 3.257 11 H -0.185 1.185 12 H -0.216 1.216 13 H -0.200 1.200 14 C 0.289 3.711 15 O -0.507 6.507 16 C -0.062 4.062 17 C -0.167 4.167 18 C -0.061 4.061 19 C -0.161 4.161 20 C -0.174 4.174 21 C -0.045 4.045 22 C -0.151 4.151 23 N -0.159 5.159 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.190 0.810 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.143 4.343 -7.971 9.078 hybrid contribution 0.302 0.755 0.525 0.968 sum 0.445 5.098 -7.446 9.035 Atomic orbital electron populations 1.22860 0.80423 1.03162 1.00422 1.88156 1.20683 1.27450 1.95351 1.22751 0.92719 0.85200 1.00796 1.21990 0.94795 0.98819 0.87784 1.43791 1.54795 1.07201 1.09873 1.19117 1.36968 0.78801 1.04489 0.88192 1.25695 0.96831 0.95503 0.99174 1.69663 1.45948 1.07914 1.30121 0.86327 0.79550 0.78928 0.80934 1.18509 1.21575 1.20044 1.18539 0.81903 0.85363 0.85301 1.90558 1.60723 1.14935 1.84456 1.21106 1.00113 0.90620 0.94396 1.22033 1.00607 1.01254 0.92757 1.20668 0.94820 0.94724 0.95915 1.20845 1.03249 0.99276 0.92729 1.22352 1.01181 0.93970 0.99879 1.22155 0.94299 0.98620 0.89466 1.20686 1.02507 0.88159 1.03743 1.68529 1.09652 1.10155 1.27560 0.92330 0.94199 0.89467 0.89955 0.93944 0.91502 0.88890 0.91760 0.84459 0.89299 0.88707 0.90656 0.80953 0.90021 0.93036 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.40 -17.43 10.18 -148.98 -1.52 -18.94 16 3 C 0.06 2.53 6.28 71.98 0.45 2.98 16 4 C 0.09 4.08 4.51 86.38 0.39 4.47 16 5 N -0.44 -23.02 2.12 -638.66 -1.35 -24.37 16 6 C -0.26 -14.91 7.43 84.13 0.63 -14.28 16 7 H 0.10 6.18 6.28 -2.91 -0.02 6.17 16 8 C 0.03 1.71 5.38 84.98 0.46 2.16 16 9 N -0.90 -52.43 13.95 21.69 0.30 -52.12 16 10 Si 0.91 44.75 24.79 68.60 1.70 46.45 16 11 H -0.26 -11.83 6.79 99.48 0.68 -11.15 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.28 -13.69 7.06 99.48 0.70 -12.99 16 14 C 0.50 25.73 7.61 86.83 0.66 26.39 16 15 O -0.62 -32.31 15.96 -3.93 -0.06 -32.37 16 16 C 0.08 3.52 6.65 41.88 0.28 3.80 16 17 C -0.15 -5.49 9.34 22.63 0.21 -5.28 16 18 C -0.05 -1.54 5.91 -19.69 -0.12 -1.66 16 19 C -0.10 -1.89 10.06 71.24 0.72 -1.17 16 20 C -0.15 -4.35 9.47 22.45 0.21 -4.13 16 21 C 0.09 3.49 6.78 42.68 0.29 3.78 16 22 C -0.09 -2.93 10.14 71.24 0.72 -2.21 16 23 N -0.45 -21.01 6.33 -173.11 -1.10 -22.11 16 24 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 3.17 3.27 -2.39 -0.01 3.16 16 30 H 0.09 4.05 7.50 -2.39 -0.02 4.03 16 31 H 0.27 14.96 8.31 -92.70 -0.77 14.18 16 32 H 0.14 5.01 7.64 -2.91 -0.02 4.99 16 33 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.09 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 36 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.10 2.36 8.11 -2.38 -0.02 2.34 16 Total: -1.00 -73.12 325.37 5.14 -67.98 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.01 Total: 18.51 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.15 Total: 16.97 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -2.15 Total: -98.60 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.58 Total: -51.31 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.70 Total: 46.45 kcal Total: -73.12 5.14 -67.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316941254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.328 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds