Wall clock time and date at job start Tue Mar 31 2020 00:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00072 * 2 1 4 4 C 1.52994 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47168 * 65.00219 * 4 3 2 6 6 C 1.36787 * 119.99917 * 93.57728 * 5 4 3 7 7 H 1.07998 * 119.99751 * 225.73678 * 6 5 4 8 8 C 1.39110 * 119.99870 * 45.46280 * 6 5 4 9 9 N 1.31321 * 119.99578 * 6.80427 * 8 6 5 10 10 Si 1.86797 * 119.99961 * 186.80440 * 8 6 5 11 11 H 1.48502 * 109.47190 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47315 * 120.00284 * 10 8 6 13 13 H 1.48506 * 109.46920 * 239.99942 * 10 8 6 14 14 C 1.34771 * 120.00024 * 273.58107 * 5 4 3 15 15 O 1.21569 * 120.00085 * 355.21276 * 14 5 4 16 16 C 1.48010 * 120.00039 * 175.21248 * 14 5 4 17 17 C 1.39413 * 119.73298 * 185.68801 * 16 14 5 18 18 C 1.38536 * 119.05207 * 179.77469 * 17 16 14 19 19 C 1.38664 * 118.50157 * 0.49586 * 18 17 16 20 20 C 1.50694 * 120.32006 * 179.72636 * 19 18 17 21 21 C 1.38552 * 119.36385 * 359.74865 * 19 18 17 22 22 C 1.50707 * 119.54040 * 180.02562 * 21 19 18 23 23 N 1.31528 * 120.91691 * 0.02562 * 21 19 18 24 24 H 1.09000 * 109.46924 * 299.99802 * 1 2 3 25 25 H 1.08999 * 109.47539 * 59.99731 * 1 2 3 26 26 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46816 * 59.99901 * 3 2 1 28 28 H 1.08996 * 109.47243 * 300.00690 * 3 2 1 29 29 H 1.09000 * 109.47448 * 305.00426 * 4 3 2 30 30 H 1.09003 * 109.47150 * 185.00430 * 4 3 2 31 31 H 0.97001 * 119.99366 * 179.97438 * 9 8 6 32 32 H 1.08004 * 120.46902 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.74779 * 180.24373 * 18 17 16 34 34 H 1.08999 * 109.47332 * 270.02778 * 20 19 18 35 35 H 1.09005 * 109.46861 * 30.02096 * 20 19 18 36 36 H 1.08993 * 109.47174 * 150.02172 * 20 19 18 37 37 H 1.09006 * 109.46836 * 269.97281 * 22 21 19 38 38 H 1.09002 * 109.47094 * 29.97443 * 22 21 19 39 39 H 1.08998 * 109.46834 * 149.97693 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.3359 1.3481 -2.3145 7 1 3.9725 1.1161 -3.3047 8 6 5.1657 2.4471 -2.1178 9 7 5.7108 2.6560 -0.9415 10 14 5.5044 3.6257 -3.5269 11 1 4.7770 3.1703 -4.7388 12 1 5.0439 4.9875 -3.1549 13 1 6.9625 3.6557 -3.8074 14 6 4.0256 -0.7782 -1.3586 15 8 3.7896 -1.4735 -0.3897 16 6 4.3678 -1.4062 -2.6545 17 6 4.3022 -2.7921 -2.7899 18 6 4.6210 -3.3647 -4.0104 19 6 5.0047 -2.5329 -5.0514 20 6 5.3663 -3.1124 -6.3946 21 6 5.0529 -1.1637 -4.8446 22 6 5.4688 -0.2559 -5.9734 23 7 4.7407 -0.6453 -3.6768 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9785 2.1765 0.0890 31 1 6.2897 3.4222 -0.8045 32 1 4.0032 -3.4103 -1.9562 33 1 4.5757 -4.4351 -4.1469 34 1 6.4337 -3.3318 -6.4203 35 1 4.8026 -4.0311 -6.5576 36 1 5.1242 -2.3938 -7.1775 37 1 6.5496 -0.1161 -5.9478 38 1 5.1829 -0.7046 -6.9247 39 1 4.9749 0.7096 -5.8639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319097361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:29 Heat of formation + Delta-G solvation = -28.319332 kcal Electronic energy + Delta-G solvation = -22468.694513 eV Core-core repulsion = 19184.422243 eV Total energy + Delta-G solvation = -3284.272271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92427 -38.16363 -36.79297 -34.69968 -33.31028 -32.39436 -31.45108 -29.29850 -27.86824 -26.70506 -25.67686 -24.68005 -22.75946 -21.99780 -20.79999 -19.19545 -17.63569 -16.33825 -15.68935 -15.43124 -15.29098 -14.81438 -14.47283 -14.36007 -14.23687 -13.97498 -13.56859 -13.20783 -12.75380 -12.65185 -12.54755 -12.32239 -11.83220 -11.73562 -11.66018 -11.42865 -11.23725 -11.04615 -11.02979 -10.84945 -10.39489 -10.28166 -10.14906 -9.13004 -9.06625 -8.96786 -8.75604 -8.17936 -8.11356 -7.19173 -6.20008 -3.89516 1.42391 1.87841 3.19657 3.28376 3.33116 3.84250 4.21363 4.54701 4.65505 4.81232 4.93164 5.07542 5.18824 5.27706 5.30935 5.62449 5.66119 5.70624 5.75922 5.92427 5.93481 5.97766 6.02193 6.03895 6.10457 6.14362 6.18546 6.27381 6.41533 6.48273 6.70761 6.75473 6.95599 7.27809 7.30740 7.75874 7.91832 8.14613 8.62225 8.74145 9.25023 9.60826 10.06734 10.83207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.008658 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.348040 B = 3233.229851 C = 4818.936501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.048 3.952 4 C 0.115 3.885 5 N -0.415 5.415 6 C -0.290 4.290 7 H 0.116 0.884 8 C 0.033 3.967 9 N -0.881 5.881 10 Si 0.918 3.082 11 H -0.266 1.266 12 H -0.285 1.285 13 H -0.283 1.283 14 C 0.518 3.482 15 O -0.584 6.584 16 C 0.116 3.884 17 C -0.134 4.134 18 C -0.091 4.091 19 C -0.147 4.147 20 C -0.107 4.107 21 C 0.107 3.893 22 C -0.104 4.104 23 N -0.406 5.406 24 H 0.030 0.970 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.266 0.734 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 -4.769 -7.765 9.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.030 4.030 4 C -0.008 4.008 5 N -0.132 5.132 6 C -0.420 4.420 7 H 0.133 0.867 8 C -0.170 4.170 9 N -0.521 5.521 10 Si 0.746 3.254 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.306 3.694 15 O -0.468 6.468 16 C -0.023 4.023 17 C -0.156 4.156 18 C -0.117 4.117 19 C -0.150 4.150 20 C -0.164 4.164 21 C -0.032 4.032 22 C -0.161 4.161 23 N -0.117 5.117 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.371 -4.185 -7.032 8.850 hybrid contribution 0.047 0.020 -0.709 0.711 sum -3.324 -4.166 -7.741 9.398 Atomic orbital electron populations 1.22620 0.83484 1.01609 0.98801 1.88176 1.17419 1.28013 1.95063 1.23159 0.96552 0.84372 0.98887 1.21594 0.89057 1.02238 0.87933 1.43230 1.54364 1.03204 1.12389 1.20166 1.25851 1.06598 0.89383 0.86737 1.25535 0.95233 0.99194 0.97026 1.69742 1.30636 1.29201 1.22478 0.85995 0.78228 0.79534 0.81682 1.18986 1.21148 1.20911 1.17995 0.81908 0.83441 0.86029 1.90627 1.55514 1.62826 1.37872 1.21526 0.96370 0.90292 0.94103 1.22055 0.99845 0.95659 0.98000 1.21258 0.98476 0.99489 0.92481 1.20770 1.02637 0.94657 0.96905 1.20745 1.01415 1.00626 0.93614 1.21447 0.96402 0.91064 0.94326 1.20737 1.01879 0.99213 0.94265 1.68688 1.07411 1.37477 0.98142 0.95124 0.95034 0.90615 0.94153 0.93508 0.91822 0.85876 0.92372 0.84429 0.85448 0.91403 0.92003 0.91161 0.90835 0.91171 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.37 -8.13 9.28 -46.07 -0.43 -8.56 16 3 C 0.05 1.01 6.28 37.15 0.23 1.25 16 4 C 0.12 2.84 5.41 -4.04 -0.02 2.82 16 5 N -0.42 -10.99 2.48 -115.84 -0.29 -11.28 16 6 C -0.29 -7.61 7.58 -15.02 -0.11 -7.73 16 7 H 0.12 3.00 5.83 -52.49 -0.31 2.69 16 8 C 0.03 0.85 5.20 -17.45 -0.09 0.76 16 9 N -0.88 -23.76 11.23 55.50 0.62 -23.13 16 10 Si 0.92 20.16 29.56 -169.99 -5.02 15.13 16 11 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.52 13.78 7.12 -12.26 -0.09 13.69 16 15 O -0.58 -16.38 15.07 -5.53 -0.08 -16.46 16 16 C 0.12 2.73 6.66 -83.01 -0.55 2.18 16 17 C -0.13 -2.67 9.63 -39.03 -0.38 -3.05 16 18 C -0.09 -1.47 9.85 -39.31 -0.39 -1.86 16 19 C -0.15 -2.31 5.91 -104.35 -0.62 -2.93 16 20 C -0.11 -1.19 9.62 36.00 0.35 -0.84 16 21 C 0.11 1.97 6.78 -82.60 -0.56 1.41 16 22 C -0.10 -1.55 9.77 36.01 0.35 -1.20 16 23 N -0.41 -9.17 6.23 -6.07 -0.04 -9.20 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 1.64 7.47 -51.93 -0.39 1.26 16 30 H 0.12 3.12 5.63 -51.93 -0.29 2.83 16 31 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.14 2.66 7.65 -52.48 -0.40 2.26 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.81 5.93 -51.93 -0.31 0.50 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -31.76 324.03 -6.48 -38.24 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.36 Total: 4.23 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.76 Total: 6.15 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.30 Total: -43.62 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.51 Total: -25.02 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.76 -6.48 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319097361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.925 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds