Wall clock time and date at job start Tue Mar 31 2020 00:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00072 * 2 1 4 4 C 1.52994 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47168 * 65.00219 * 4 3 2 6 6 C 1.36787 * 119.99917 * 93.57728 * 5 4 3 7 7 H 1.07998 * 119.99751 * 225.73678 * 6 5 4 8 8 C 1.39110 * 119.99870 * 45.46280 * 6 5 4 9 9 N 1.31321 * 119.99578 * 6.80427 * 8 6 5 10 10 Si 1.86797 * 119.99961 * 186.80440 * 8 6 5 11 11 H 1.48502 * 109.47190 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47315 * 120.00284 * 10 8 6 13 13 H 1.48506 * 109.46920 * 239.99942 * 10 8 6 14 14 C 1.34771 * 120.00024 * 273.58107 * 5 4 3 15 15 O 1.21569 * 120.00085 * 355.21276 * 14 5 4 16 16 C 1.48010 * 120.00039 * 175.21248 * 14 5 4 17 17 C 1.39413 * 119.73298 * 185.68801 * 16 14 5 18 18 C 1.38536 * 119.05207 * 179.77469 * 17 16 14 19 19 C 1.38664 * 118.50157 * 0.49586 * 18 17 16 20 20 C 1.50694 * 120.32006 * 179.72636 * 19 18 17 21 21 C 1.38552 * 119.36385 * 359.74865 * 19 18 17 22 22 C 1.50707 * 119.54040 * 180.02562 * 21 19 18 23 23 N 1.31528 * 120.91691 * 0.02562 * 21 19 18 24 24 H 1.09000 * 109.46924 * 299.99802 * 1 2 3 25 25 H 1.08999 * 109.47539 * 59.99731 * 1 2 3 26 26 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46816 * 59.99901 * 3 2 1 28 28 H 1.08996 * 109.47243 * 300.00690 * 3 2 1 29 29 H 1.09000 * 109.47448 * 305.00426 * 4 3 2 30 30 H 1.09003 * 109.47150 * 185.00430 * 4 3 2 31 31 H 0.97001 * 119.99366 * 179.97438 * 9 8 6 32 32 H 1.08004 * 120.46902 * 0.02562 * 17 16 14 33 33 H 1.08001 * 120.74779 * 180.24373 * 18 17 16 34 34 H 1.08999 * 109.47332 * 270.02778 * 20 19 18 35 35 H 1.09005 * 109.46861 * 30.02096 * 20 19 18 36 36 H 1.08993 * 109.47174 * 150.02172 * 20 19 18 37 37 H 1.09006 * 109.46836 * 269.97281 * 22 21 19 38 38 H 1.09002 * 109.47094 * 29.97443 * 22 21 19 39 39 H 1.08998 * 109.46834 * 149.97693 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.3359 1.3481 -2.3145 7 1 3.9725 1.1161 -3.3047 8 6 5.1657 2.4471 -2.1178 9 7 5.7108 2.6560 -0.9415 10 14 5.5044 3.6257 -3.5269 11 1 4.7770 3.1703 -4.7388 12 1 5.0439 4.9875 -3.1549 13 1 6.9625 3.6557 -3.8074 14 6 4.0256 -0.7782 -1.3586 15 8 3.7896 -1.4735 -0.3897 16 6 4.3678 -1.4062 -2.6545 17 6 4.3022 -2.7921 -2.7899 18 6 4.6210 -3.3647 -4.0104 19 6 5.0047 -2.5329 -5.0514 20 6 5.3663 -3.1124 -6.3946 21 6 5.0529 -1.1637 -4.8446 22 6 5.4688 -0.2559 -5.9734 23 7 4.7407 -0.6453 -3.6768 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9785 2.1765 0.0890 31 1 6.2897 3.4222 -0.8045 32 1 4.0032 -3.4103 -1.9562 33 1 4.5757 -4.4351 -4.1469 34 1 6.4337 -3.3318 -6.4203 35 1 4.8026 -4.0311 -6.5576 36 1 5.1242 -2.3938 -7.1775 37 1 6.5496 -0.1161 -5.9478 38 1 5.1829 -0.7046 -6.9247 39 1 4.9749 0.7096 -5.8639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319097361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:28 Heat of formation + Delta-G solvation = -48.209767 kcal Electronic energy + Delta-G solvation = -22469.557027 eV Core-core repulsion = 19184.422243 eV Total energy + Delta-G solvation = -3285.134785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47812 -39.95677 -38.47379 -36.66190 -34.66960 -33.80643 -33.41000 -31.02249 -29.09125 -28.10965 -27.17729 -26.57974 -24.31982 -23.45551 -22.36565 -21.07598 -19.43010 -18.03996 -17.35454 -17.03788 -16.96349 -16.43299 -16.08883 -15.87671 -15.82754 -15.58364 -15.14399 -14.78869 -14.30431 -14.00423 -13.59973 -13.54568 -13.42567 -13.24891 -13.12218 -12.97671 -12.87427 -12.74674 -12.60393 -12.31380 -12.08506 -11.93604 -11.91180 -10.98801 -10.70812 -10.53533 -10.51902 -9.89290 -9.58778 -9.13396 -8.15376 -5.92478 -0.07848 0.47955 1.45479 1.47617 1.61987 2.12965 2.38845 2.87029 3.04218 3.05748 3.25118 3.58714 3.90653 4.06947 4.09211 4.21454 4.25857 4.37295 4.47463 4.53795 4.55422 4.65562 4.74100 4.76279 4.77216 4.81223 4.88377 4.97474 4.99254 5.21245 5.30063 5.32011 5.32546 5.43861 5.73079 5.94614 6.17056 6.38778 6.67594 7.12244 7.31327 7.64516 8.09373 8.88390 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.008658 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.348040 B = 3233.229851 C = 4818.936501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.428 5.428 6 C -0.297 4.297 7 H 0.113 0.887 8 C -0.011 4.011 9 N -0.916 5.916 10 Si 0.981 3.019 11 H -0.252 1.252 12 H -0.280 1.280 13 H -0.285 1.285 14 C 0.503 3.497 15 O -0.616 6.616 16 C 0.071 3.929 17 C -0.141 4.141 18 C -0.083 4.083 19 C -0.125 4.125 20 C -0.105 4.105 21 C 0.086 3.914 22 C -0.102 4.102 23 N -0.440 5.440 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.112 0.888 31 H 0.267 0.733 32 H 0.132 0.868 33 H 0.173 0.827 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.695 -5.820 -11.149 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.018 4.018 4 C -0.009 4.009 5 N -0.145 5.145 6 C -0.426 4.426 7 H 0.130 0.870 8 C -0.210 4.210 9 N -0.557 5.557 10 Si 0.806 3.194 11 H -0.175 1.175 12 H -0.205 1.205 13 H -0.211 1.211 14 C 0.292 3.708 15 O -0.503 6.503 16 C -0.067 4.067 17 C -0.163 4.163 18 C -0.108 4.108 19 C -0.127 4.127 20 C -0.162 4.162 21 C -0.054 4.054 22 C -0.158 4.158 23 N -0.152 5.152 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.150 0.850 33 H 0.190 0.810 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.573 -5.232 -10.420 12.195 hybrid contribution 0.102 0.181 0.263 0.335 sum -3.471 -5.051 -10.157 11.863 Atomic orbital electron populations 1.22860 0.80616 1.03057 1.00444 1.88118 1.20639 1.28314 1.95377 1.22945 0.94092 0.84592 1.00133 1.21523 0.91744 1.00727 0.86857 1.43458 1.54694 1.03528 1.12792 1.20277 1.26276 1.06709 0.89320 0.86965 1.26330 0.94811 1.00507 0.99336 1.69875 1.31537 1.29921 1.24335 0.85036 0.77809 0.77405 0.79189 1.17543 1.20547 1.21078 1.18653 0.81254 0.83511 0.87335 1.90559 1.56927 1.63432 1.39386 1.21200 1.00238 0.91727 0.93513 1.22129 1.00213 0.94196 0.99749 1.21736 0.96625 1.01745 0.90710 1.21344 0.98947 0.93482 0.98934 1.20895 1.02859 1.01877 0.90565 1.22115 0.96329 0.93302 0.93698 1.20854 1.02213 0.98051 0.94716 1.68431 1.08481 1.38863 0.99385 0.92661 0.94057 0.89369 0.91161 0.93678 0.94443 0.87032 0.92361 0.85024 0.80964 0.89540 0.89541 0.89406 0.89937 0.87124 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.41 -18.34 9.28 -138.62 -1.29 -19.63 16 3 C 0.06 2.60 6.28 71.98 0.45 3.06 16 4 C 0.11 6.00 5.41 86.38 0.47 6.47 16 5 N -0.43 -23.89 2.48 -638.66 -1.58 -25.48 16 6 C -0.30 -16.14 7.58 84.13 0.64 -15.50 16 7 H 0.11 6.07 5.83 -2.91 -0.02 6.05 16 8 C -0.01 -0.57 5.20 84.98 0.44 -0.12 16 9 N -0.92 -51.31 11.23 21.69 0.24 -51.07 16 10 Si 0.98 41.75 29.56 68.60 2.03 43.78 16 11 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 14 C 0.50 28.28 7.12 86.84 0.62 28.90 16 15 O -0.62 -36.72 15.07 6.43 0.10 -36.62 16 16 C 0.07 3.44 6.66 41.88 0.28 3.71 16 17 C -0.14 -5.64 9.63 22.62 0.22 -5.42 16 18 C -0.08 -2.43 9.85 22.44 0.22 -2.21 16 19 C -0.12 -3.46 5.91 -19.69 -0.12 -3.57 16 20 C -0.11 -1.71 9.62 71.23 0.69 -1.02 16 21 C 0.09 3.01 6.78 42.68 0.29 3.30 16 22 C -0.10 -2.74 9.77 71.24 0.70 -2.04 16 23 N -0.44 -20.10 6.23 -173.10 -1.08 -21.18 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 2.08 7.47 -2.39 -0.02 2.06 16 30 H 0.11 6.01 5.63 -2.39 -0.01 6.00 16 31 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.13 5.25 7.65 -2.91 -0.02 5.23 16 33 H 0.17 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 36 H 0.09 1.18 5.95 -2.39 -0.01 1.16 16 37 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.11 2.02 5.93 -2.39 -0.01 2.00 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -74.59 324.03 5.61 -68.98 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.05 Total: 23.57 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.14 Total: 17.65 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -2.42 Total: -97.73 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -1.19 Total: -56.25 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -74.59 5.61 -68.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319097361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.767 kcal (2) G-P(sol) polarization free energy of solvation -74.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds