Wall clock time and date at job start Tue Mar 31 2020 00:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35423 * 117.00213 * 2 1 4 4 N 1.32240 * 119.80255 * 0.27442 * 3 2 1 5 5 C 1.31882 * 121.80373 * 180.26410 * 4 3 2 6 6 C 1.50696 * 119.40497 * 179.69739 * 5 4 3 7 7 C 1.38356 * 121.18567 * 359.72507 * 5 4 3 8 8 C 1.38336 * 119.45435 * 359.97438 * 7 5 4 9 9 C 1.39985 * 118.35680 * 359.97438 * 8 7 5 10 10 C 1.47518 * 120.60295 * 179.97438 * 9 8 7 11 11 O 1.21597 * 119.99937 * 139.89829 * 10 9 8 12 12 N 1.34776 * 120.00088 * 319.62432 * 10 9 8 13 13 C 1.46499 * 119.99756 * 355.10618 * 12 10 9 14 14 C 1.46503 * 120.00170 * 175.10743 * 12 10 9 15 15 H 1.09001 * 109.46998 * 359.97438 * 14 12 10 16 16 C 1.53004 * 109.46948 * 240.00062 * 14 12 10 17 17 C 1.50693 * 109.47406 * 120.00151 * 14 12 10 18 18 H 1.08006 * 119.99794 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00444 * 180.02562 * 17 14 12 20 20 N 1.31519 * 119.99653 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 120.00047 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47160 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46882 * 120.00102 * 21 19 17 24 24 H 1.48502 * 109.46823 * 239.99504 * 21 19 17 25 25 H 1.09002 * 109.47059 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.47071 * 59.99611 * 1 2 3 27 27 H 1.09003 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47611 * 270.02261 * 6 5 4 29 29 H 1.08996 * 109.47347 * 30.03049 * 6 5 4 30 30 H 1.09005 * 109.46597 * 150.02499 * 6 5 4 31 31 H 1.07999 * 120.27212 * 179.97438 * 7 5 4 32 32 H 1.08006 * 120.82136 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46763 * 116.26849 * 13 12 10 34 34 H 1.08998 * 109.47251 * 236.26365 * 13 12 10 35 35 H 1.08997 * 109.47439 * 356.27301 * 13 12 10 36 36 H 1.08999 * 109.46982 * 179.97438 * 16 14 12 37 37 H 1.09001 * 109.47210 * 299.99795 * 16 14 12 38 38 H 1.08999 * 109.46830 * 60.00083 * 16 14 12 39 39 H 0.96994 * 119.99917 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3132 0.0055 5 6 1.8771 3.5084 0.0006 6 6 1.0000 4.7338 0.0003 7 6 3.2526 3.6575 -0.0050 8 6 4.0587 2.5333 -0.0048 9 6 3.4450 1.2751 0.0016 10 6 4.2569 0.0435 0.0015 11 8 3.9221 -0.9055 0.6840 12 7 5.3668 -0.0319 -0.7594 13 6 5.7087 1.0661 -1.6670 14 6 6.2313 -1.2120 -0.6790 15 1 5.8189 -1.9159 0.0438 16 6 7.6328 -0.7881 -0.2348 17 6 6.3109 -1.8697 -2.0324 18 1 5.7717 -1.4504 -2.8691 19 6 7.0718 -3.0067 -2.2028 20 7 7.7288 -3.5170 -1.1841 21 14 7.1698 -3.8223 -3.8805 22 1 6.3463 -3.0579 -4.8514 23 1 8.5822 -3.8436 -4.3388 24 1 6.6594 -5.2136 -3.7850 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7847 5.0265 -1.0274 29 1 0.0668 4.5128 0.5183 30 1 1.5142 5.5487 0.5100 31 1 3.6934 4.6435 -0.0094 32 1 5.1349 2.6240 -0.0095 33 1 6.6519 1.5149 -1.3551 34 1 5.8075 0.6812 -2.6819 35 1 4.9213 1.8193 -1.6389 36 1 8.2759 -1.6661 -0.1745 37 1 8.0455 -0.0839 -0.9573 38 1 7.5752 -0.3124 0.7442 39 1 8.2639 -4.3171 -1.3039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330724936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:41 Heat of formation + Delta-G solvation = -49.315237 kcal Electronic energy + Delta-G solvation = -22072.845610 eV Core-core repulsion = 18787.662889 eV Total energy + Delta-G solvation = -3285.182722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.05909 -40.28700 -39.11041 -37.12938 -35.16010 -33.94425 -32.76153 -31.23523 -29.36978 -27.95283 -27.58311 -27.29518 -24.53733 -23.80175 -22.80484 -20.54070 -19.19787 -18.57744 -18.07598 -17.95406 -17.29209 -17.01141 -16.33246 -15.86715 -15.55188 -15.22403 -15.02268 -14.96978 -14.53844 -14.23968 -13.89649 -13.55656 -13.50914 -13.33798 -13.07137 -12.97002 -12.86201 -12.70890 -12.67849 -12.64785 -12.20849 -12.12177 -11.98280 -11.22195 -11.10460 -10.81930 -10.58450 -10.43374 -9.54246 -9.28708 -8.15617 -6.32022 -0.25831 0.21237 1.39001 1.40983 1.52337 1.80582 2.07949 2.25475 2.44910 2.70112 3.12195 3.13308 3.68008 3.74484 3.93571 4.22737 4.31648 4.35217 4.35950 4.39925 4.64249 4.64940 4.73472 4.78604 4.86035 4.89516 4.96543 4.97279 5.03207 5.04545 5.18788 5.46896 5.51548 5.59741 5.65381 6.03354 6.15242 6.21016 6.70208 6.74813 6.80434 7.28283 7.44472 8.89104 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024157 B = 0.004840 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.800589 B = 5784.059713 C = 6210.366819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.348 3.652 4 N -0.553 5.553 5 C 0.177 3.823 6 C -0.101 4.101 7 C -0.201 4.201 8 C -0.006 4.006 9 C -0.233 4.233 10 C 0.548 3.452 11 O -0.592 6.592 12 N -0.593 5.593 13 C 0.072 3.928 14 C 0.262 3.738 15 H 0.006 0.994 16 C -0.130 4.130 17 C -0.538 4.538 18 H 0.056 0.944 19 C 0.016 3.984 20 N -0.916 5.916 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.270 1.270 24 H -0.285 1.285 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.190 0.810 32 H 0.169 0.831 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.023 0.977 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 20.174 -0.357 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.169 3.831 4 N -0.279 5.279 5 C 0.040 3.960 6 C -0.158 4.158 7 C -0.221 4.221 8 C -0.031 4.031 9 C -0.239 4.239 10 C 0.336 3.664 11 O -0.474 6.474 12 N -0.323 5.323 13 C -0.070 4.070 14 C 0.160 3.840 15 H 0.024 0.976 16 C -0.189 4.189 17 C -0.577 4.577 18 H 0.074 0.926 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.211 1.211 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.208 0.792 32 H 0.186 0.814 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.851 19.156 0.024 22.016 hybrid contribution 0.796 -1.291 -0.585 1.626 sum -10.055 17.864 -0.561 20.507 Atomic orbital electron populations 1.23092 0.75617 1.04318 1.02771 1.86413 1.24721 1.24996 1.86491 1.19888 0.88225 0.85219 0.89754 1.67309 1.40220 0.98480 1.21877 1.22019 0.93634 0.92081 0.88311 1.20934 0.98717 0.91406 1.04776 1.22195 0.93129 1.00796 1.05955 1.22016 1.02274 0.89124 0.89676 1.19983 0.91643 0.95512 1.16756 1.18500 0.80811 0.87108 0.79963 1.90705 1.70872 1.40250 1.45535 1.48098 1.23589 1.20959 1.39636 1.22178 1.02050 0.89024 0.93764 1.18576 0.87070 0.82286 0.96068 0.97566 1.21851 0.98556 1.01151 0.97313 1.21558 1.29387 1.11304 0.95448 0.92573 1.25723 0.94803 0.97087 1.00744 1.70026 1.31288 1.22285 1.31922 0.85399 0.78227 0.77921 0.79403 1.19222 1.19520 1.21123 0.91632 0.91475 0.87263 0.88295 0.90605 0.87162 0.79237 0.81415 0.90227 0.92595 0.88693 0.91275 0.92993 0.95792 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.00 10.38 113.37 1.18 2.17 16 2 O -0.32 -12.67 9.28 -72.55 -0.67 -13.34 16 3 C 0.35 12.55 7.48 85.13 0.64 13.18 16 4 N -0.55 -15.69 9.11 -296.05 -2.70 -18.39 16 5 C 0.18 3.57 6.78 42.58 0.29 3.85 16 6 C -0.10 -1.05 10.16 71.23 0.72 -0.33 16 7 C -0.20 -3.52 9.71 22.32 0.22 -3.30 16 8 C -0.01 -0.14 7.44 22.72 0.17 0.03 16 9 C -0.23 -8.51 5.16 -19.91 -0.10 -8.61 16 10 C 0.55 26.06 7.13 86.69 0.62 26.68 16 11 O -0.59 -34.25 15.53 10.61 0.16 -34.09 16 12 N -0.59 -27.17 2.75 -830.57 -2.29 -29.46 16 13 C 0.07 2.40 8.49 127.77 1.09 3.49 16 14 C 0.26 14.33 2.63 44.24 0.12 14.44 16 15 H 0.01 0.42 6.91 -2.39 -0.02 0.40 16 16 C -0.13 -6.38 8.89 71.98 0.64 -5.74 16 17 C -0.54 -30.64 8.26 25.60 0.21 -30.43 16 18 H 0.06 3.15 7.06 -2.91 -0.02 3.13 16 19 C 0.02 0.90 5.30 84.65 0.45 1.35 16 20 N -0.92 -54.01 11.32 21.45 0.24 -53.77 16 21 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 25 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 26 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 27 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.11 0.51 8.07 -2.38 -0.02 0.49 16 31 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.17 3.46 6.60 -2.91 -0.02 3.45 16 33 H 0.08 2.26 7.34 -2.38 -0.02 2.24 16 34 H 0.06 2.00 7.13 -2.39 -0.02 1.98 16 35 H 0.09 2.57 4.38 -2.39 -0.01 2.56 16 36 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 37 H 0.05 2.26 7.22 -2.39 -0.02 2.25 16 38 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -80.61 322.61 4.06 -76.55 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.06 Total: 9.34 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.23 Total: 16.79 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -4.74 Total: -101.61 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.51 Total: -47.43 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -80.61 4.06 -76.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330724936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.232 kcal (2) G-P(sol) polarization free energy of solvation -80.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds