Wall clock time and date at job start Tue Mar 31 2020 00:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35650 * 117.00106 * 2 1 4 4 C 1.39340 * 120.54125 * 0.02562 * 3 2 1 5 5 C 1.38296 * 118.43881 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.27730 * 179.97438 * 5 4 3 7 7 C 1.38767 * 119.44741 * 0.02562 * 5 4 3 8 8 N 1.31371 * 121.06345 * 0.02562 * 7 5 4 9 9 C 1.32861 * 121.69887 * 359.97438 * 8 7 5 10 10 C 1.47830 * 119.78010 * 179.97438 * 9 8 7 11 11 O 1.21560 * 119.99424 * 173.78858 * 10 9 8 12 12 N 1.34771 * 120.00278 * 353.78999 * 10 9 8 13 13 C 1.46503 * 120.00263 * 2.81777 * 12 10 9 14 14 C 1.46504 * 119.99860 * 182.81302 * 12 10 9 15 15 H 1.09004 * 109.47217 * 0.02562 * 14 12 10 16 16 C 1.52999 * 109.47090 * 240.00185 * 14 12 10 17 17 C 1.50702 * 109.46870 * 120.00248 * 14 12 10 18 18 H 1.07994 * 120.00074 * 0.02562 * 17 14 12 19 19 C 1.37874 * 119.99685 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00417 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99910 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47030 * 89.99717 * 21 19 17 23 23 H 1.48499 * 109.47285 * 210.00262 * 21 19 17 24 24 H 1.48506 * 109.46925 * 329.99999 * 21 19 17 25 25 H 1.09005 * 109.46252 * 299.99898 * 1 2 3 26 26 H 1.08990 * 109.47204 * 59.99401 * 1 2 3 27 27 H 1.09000 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.78097 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47319 * 270.02539 * 6 5 4 30 30 H 1.09004 * 109.47195 * 30.01943 * 6 5 4 31 31 H 1.09002 * 109.47666 * 150.02281 * 6 5 4 32 32 H 1.07999 * 119.46386 * 179.71959 * 7 5 4 33 33 H 1.08999 * 109.47072 * 83.83599 * 13 12 10 34 34 H 1.08998 * 109.46913 * 203.83333 * 13 12 10 35 35 H 1.09004 * 109.46715 * 323.83397 * 13 12 10 36 36 H 1.09002 * 109.47141 * 60.00255 * 16 14 12 37 37 H 1.09003 * 109.47189 * 180.02562 * 16 14 12 38 38 H 1.08997 * 109.47229 * 299.99611 * 16 14 12 39 39 H 0.97001 * 120.00485 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0005 5 6 1.9698 3.5927 0.0011 6 6 1.2022 4.8896 0.0011 7 6 3.3574 3.6010 0.0005 8 7 4.0420 2.4798 -0.0010 9 6 3.4411 1.2949 -0.0016 10 6 4.2532 0.0597 -0.0039 11 8 3.7127 -1.0232 0.1095 12 7 5.5928 0.1342 -0.1317 13 6 6.2500 1.4414 -0.2062 14 6 6.3918 -1.0921 -0.1959 15 1 5.7340 -1.9585 -0.1258 16 6 7.3886 -1.1127 0.9646 17 6 7.1413 -1.1354 -1.5026 18 1 7.0336 -0.3298 -2.2139 19 6 7.9645 -2.2034 -1.7901 20 7 8.0961 -3.1841 -0.9238 21 14 8.8930 -2.2574 -3.4102 22 1 10.2152 -1.6021 -3.2450 23 1 9.0888 -3.6708 -3.8216 24 1 8.1128 -1.5422 -4.4519 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 0.2176 2.3528 0.0014 29 1 1.0171 5.2023 -1.0266 30 1 0.2512 4.7490 0.5148 31 1 1.7830 5.6557 0.5149 32 1 3.8830 4.5445 -0.0037 33 1 6.4114 1.8249 0.8012 34 1 7.2092 1.3374 -0.7134 35 1 5.6183 2.1344 -0.7620 36 1 6.8465 -1.0814 1.9098 37 1 7.9834 -2.0249 0.9166 38 1 8.0463 -0.2465 0.8941 39 1 8.6749 -3.9357 -1.1262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331134907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:43 Heat of formation + Delta-G solvation = -16.947802 kcal Electronic energy + Delta-G solvation = -22061.620200 eV Core-core repulsion = 18777.841036 eV Total energy + Delta-G solvation = -3283.779164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85515 -38.50844 -38.10030 -35.12498 -33.90724 -32.51281 -30.91283 -29.41828 -28.05399 -27.05119 -25.79712 -25.10764 -23.43451 -22.61467 -21.13177 -18.99017 -17.52778 -17.29748 -16.61194 -16.13275 -15.89658 -15.30239 -14.79493 -14.51232 -14.11837 -14.05443 -13.88349 -13.71041 -12.99845 -12.80628 -12.67311 -12.34278 -12.25731 -11.99115 -11.56030 -11.44079 -11.43005 -11.21625 -10.99138 -10.72712 -10.57123 -10.15307 -10.06966 -9.56938 -9.42826 -8.99743 -8.67414 -8.33109 -8.32356 -7.33738 -5.97652 -4.04855 0.80318 1.25525 3.20608 3.28274 3.33139 3.39442 3.43378 3.93331 4.21529 4.41247 4.48208 4.52852 4.74964 4.81701 4.98162 4.98252 5.06232 5.29411 5.32962 5.34077 5.42466 5.49648 5.70222 5.89125 6.02218 6.30004 6.41015 6.51413 6.85738 6.92995 7.01390 7.19857 7.27257 7.60070 7.66042 7.83441 7.89069 8.14992 8.31491 8.69447 8.94193 9.20982 9.61124 11.07675 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023599 B = 0.004824 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.184727 B = 5803.502916 C = 6258.081970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.268 6.268 3 C 0.136 3.864 4 C -0.182 4.182 5 C -0.086 4.086 6 C -0.111 4.111 7 C 0.046 3.954 8 N -0.405 5.405 9 C 0.054 3.946 10 C 0.553 3.447 11 O -0.533 6.533 12 N -0.572 5.572 13 C 0.082 3.918 14 C 0.256 3.744 15 H 0.063 0.937 16 C -0.144 4.144 17 C -0.522 4.522 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.160 0.840 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.011 0.989 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.141 15.285 2.470 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.086 3.914 4 C -0.208 4.208 5 C -0.088 4.088 6 C -0.169 4.169 7 C -0.114 4.114 8 N -0.116 5.116 9 C -0.085 4.085 10 C 0.338 3.662 11 O -0.410 6.410 12 N -0.301 5.301 13 C -0.062 4.062 14 C 0.156 3.844 15 H 0.081 0.919 16 C -0.203 4.203 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.200 1.200 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.122 0.878 28 H 0.159 0.841 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.030 0.970 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.302 14.266 2.553 19.672 hybrid contribution -0.583 0.234 -0.875 1.077 sum -13.886 14.500 1.678 20.146 Atomic orbital electron populations 1.23179 0.79123 1.04487 1.00789 1.86494 1.20374 1.24489 1.86375 1.20067 0.92404 0.85493 0.93473 1.21545 1.00574 0.91363 1.07316 1.20904 0.95303 0.95488 0.97143 1.20771 0.99721 0.93572 1.02787 1.22764 0.90567 0.97028 1.01008 1.68359 1.37612 0.97405 1.08245 1.21239 0.88776 0.93413 1.05098 1.17609 0.82738 0.86605 0.79272 1.90775 1.71369 1.27681 1.51186 1.48116 1.05052 1.09365 1.67593 1.22126 0.98650 0.84706 1.00694 1.18992 0.89212 0.81823 0.94374 0.91917 1.22064 0.99765 1.02861 0.95593 1.21342 1.26355 1.06273 1.02071 0.92205 1.24886 0.96601 0.95286 0.97039 1.69888 1.38489 1.09410 1.34933 0.86495 0.79964 0.77214 0.83712 1.20636 1.21166 1.19973 0.92809 0.92793 0.87762 0.84094 0.90552 0.91353 0.90757 0.82236 0.94329 0.91598 0.89084 0.97039 0.88883 0.95105 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 101.05 0.99 1.20 16 2 O -0.27 -4.61 8.58 -40.51 -0.35 -4.96 16 3 C 0.14 2.26 6.71 -38.56 -0.26 2.00 16 4 C -0.18 -2.18 8.80 -39.15 -0.34 -2.53 16 5 C -0.09 -0.92 5.90 -104.40 -0.62 -1.53 16 6 C -0.11 -0.72 10.03 36.01 0.36 -0.36 16 7 C 0.05 0.57 10.85 -17.55 -0.19 0.38 16 8 N -0.40 -6.67 5.99 -9.71 -0.06 -6.73 16 9 C 0.05 1.04 6.65 -82.88 -0.55 0.49 16 10 C 0.55 13.21 7.65 -12.34 -0.09 13.12 16 11 O -0.53 -14.36 14.50 -16.55 -0.24 -14.60 16 12 N -0.57 -13.78 2.75 -176.38 -0.49 -14.27 16 13 C 0.08 1.64 8.29 59.85 0.50 2.14 16 14 C 0.26 7.01 2.63 -69.08 -0.18 6.83 16 15 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 16 C -0.14 -3.69 8.97 37.16 0.33 -3.36 16 17 C -0.52 -14.83 7.95 -34.44 -0.27 -15.10 16 18 H 0.06 1.68 7.44 -52.49 -0.39 1.29 16 19 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 20 N -0.89 -25.95 11.32 55.43 0.63 -25.32 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 26 H 0.05 0.47 7.70 -51.93 -0.40 0.07 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.14 1.23 6.46 -52.49 -0.34 0.90 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.36 7.12 -51.93 -0.37 0.99 16 35 H 0.09 1.69 5.16 -53.37 -0.28 1.41 16 36 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 38 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -34.39 320.89 -6.44 -40.84 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.33 Total: -1.48 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -0.42 Total: 4.98 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.08 Total: -46.32 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.59 Total: -19.56 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.39 -6.44 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331134907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.888 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds