Wall clock time and date at job start Tue Mar 31 2020 00:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35650 * 117.00106 * 2 1 4 4 C 1.39340 * 120.54125 * 0.02562 * 3 2 1 5 5 C 1.38296 * 118.43881 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.27730 * 179.97438 * 5 4 3 7 7 C 1.38767 * 119.44741 * 0.02562 * 5 4 3 8 8 N 1.31371 * 121.06345 * 0.02562 * 7 5 4 9 9 C 1.32861 * 121.69887 * 359.97438 * 8 7 5 10 10 C 1.47830 * 119.78010 * 179.97438 * 9 8 7 11 11 O 1.21560 * 119.99424 * 173.78858 * 10 9 8 12 12 N 1.34771 * 120.00278 * 353.78999 * 10 9 8 13 13 C 1.46503 * 120.00263 * 2.81777 * 12 10 9 14 14 C 1.46504 * 119.99860 * 182.81302 * 12 10 9 15 15 H 1.09004 * 109.47217 * 0.02562 * 14 12 10 16 16 C 1.52999 * 109.47090 * 240.00185 * 14 12 10 17 17 C 1.50702 * 109.46870 * 120.00248 * 14 12 10 18 18 H 1.07994 * 120.00074 * 0.02562 * 17 14 12 19 19 C 1.37874 * 119.99685 * 180.02562 * 17 14 12 20 20 N 1.31512 * 120.00417 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99910 * 179.97438 * 19 17 14 22 22 H 1.48494 * 109.47030 * 89.99717 * 21 19 17 23 23 H 1.48499 * 109.47285 * 210.00262 * 21 19 17 24 24 H 1.48506 * 109.46925 * 329.99999 * 21 19 17 25 25 H 1.09005 * 109.46252 * 299.99898 * 1 2 3 26 26 H 1.08990 * 109.47204 * 59.99401 * 1 2 3 27 27 H 1.09000 * 109.47094 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.78097 * 0.02562 * 4 3 2 29 29 H 1.09002 * 109.47319 * 270.02539 * 6 5 4 30 30 H 1.09004 * 109.47195 * 30.01943 * 6 5 4 31 31 H 1.09002 * 109.47666 * 150.02281 * 6 5 4 32 32 H 1.07999 * 119.46386 * 179.71959 * 7 5 4 33 33 H 1.08999 * 109.47072 * 83.83599 * 13 12 10 34 34 H 1.08998 * 109.46913 * 203.83333 * 13 12 10 35 35 H 1.09004 * 109.46715 * 323.83397 * 13 12 10 36 36 H 1.09002 * 109.47141 * 60.00255 * 16 14 12 37 37 H 1.09003 * 109.47189 * 180.02562 * 16 14 12 38 38 H 1.08997 * 109.47229 * 299.99611 * 16 14 12 39 39 H 0.97001 * 120.00485 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0005 5 6 1.9698 3.5927 0.0011 6 6 1.2022 4.8896 0.0011 7 6 3.3574 3.6010 0.0005 8 7 4.0420 2.4798 -0.0010 9 6 3.4411 1.2949 -0.0016 10 6 4.2532 0.0597 -0.0039 11 8 3.7127 -1.0232 0.1095 12 7 5.5928 0.1342 -0.1317 13 6 6.2500 1.4414 -0.2062 14 6 6.3918 -1.0921 -0.1959 15 1 5.7340 -1.9585 -0.1258 16 6 7.3886 -1.1127 0.9646 17 6 7.1413 -1.1354 -1.5026 18 1 7.0336 -0.3298 -2.2139 19 6 7.9645 -2.2034 -1.7901 20 7 8.0961 -3.1841 -0.9238 21 14 8.8930 -2.2574 -3.4102 22 1 10.2152 -1.6021 -3.2450 23 1 9.0888 -3.6708 -3.8216 24 1 8.1128 -1.5422 -4.4519 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 0.2176 2.3528 0.0014 29 1 1.0171 5.2023 -1.0266 30 1 0.2512 4.7490 0.5148 31 1 1.7830 5.6557 0.5149 32 1 3.8830 4.5445 -0.0037 33 1 6.4114 1.8249 0.8012 34 1 7.2092 1.3374 -0.7134 35 1 5.6183 2.1344 -0.7620 36 1 6.8465 -1.0814 1.9098 37 1 7.9834 -2.0249 0.9166 38 1 8.0463 -0.2465 0.8941 39 1 8.6749 -3.9357 -1.1262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331134907.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:42 Heat of formation + Delta-G solvation = -39.544231 kcal Electronic energy + Delta-G solvation = -22062.600055 eV Core-core repulsion = 18777.841036 eV Total energy + Delta-G solvation = -3284.759019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.03332 -40.14824 -39.26272 -37.08236 -35.14999 -34.32837 -32.00791 -31.34435 -28.94291 -28.07732 -27.47141 -27.29975 -24.62227 -23.80022 -22.66030 -20.71626 -18.65472 -18.57291 -18.43422 -17.79078 -17.15407 -16.99403 -16.41333 -16.02230 -15.69533 -15.03026 -14.88524 -14.76398 -14.60658 -14.27697 -13.85566 -13.58132 -13.49293 -13.44945 -13.11547 -12.98138 -12.71488 -12.70003 -12.64653 -12.35750 -12.30678 -12.20116 -12.11742 -11.25157 -10.97546 -10.53771 -10.48215 -10.08658 -9.55033 -9.15550 -8.14350 -6.31470 -0.32859 0.24609 1.40514 1.42708 1.53092 1.88121 2.19851 2.30928 2.47970 2.83322 3.12584 3.27961 3.57597 3.73133 3.94941 4.09845 4.23106 4.26198 4.33849 4.61510 4.68722 4.72818 4.76690 4.85327 4.86629 4.90421 4.91941 5.07217 5.12067 5.22552 5.33653 5.45342 5.56964 5.61944 5.70217 6.04195 6.15946 6.27111 6.71719 6.75748 6.89340 7.30815 7.48135 8.90485 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023599 B = 0.004824 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.184727 B = 5803.502916 C = 6258.081970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.127 3.873 4 C -0.174 4.174 5 C -0.060 4.060 6 C -0.110 4.110 7 C 0.047 3.953 8 N -0.423 5.423 9 C 0.001 3.999 10 C 0.541 3.459 11 O -0.584 6.584 12 N -0.584 5.584 13 C 0.090 3.910 14 C 0.259 3.741 15 H 0.009 0.991 16 C -0.128 4.128 17 C -0.539 4.539 18 H 0.057 0.943 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.273 1.273 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.179 0.821 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.199 0.801 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.015 0.985 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.576 19.166 1.739 24.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.076 3.924 4 C -0.200 4.200 5 C -0.062 4.062 6 C -0.166 4.166 7 C -0.115 4.115 8 N -0.135 5.135 9 C -0.135 4.135 10 C 0.330 3.670 11 O -0.465 6.465 12 N -0.314 5.314 13 C -0.053 4.053 14 C 0.158 3.842 15 H 0.027 0.973 16 C -0.187 4.187 17 C -0.578 4.578 18 H 0.075 0.925 19 C -0.185 4.185 20 N -0.556 5.556 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.207 1.207 24 H -0.197 1.197 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.196 0.804 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.216 0.784 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.034 0.966 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.739 18.162 1.831 23.462 hybrid contribution -0.325 -0.826 -0.601 1.072 sum -15.064 17.337 1.231 23.000 Atomic orbital electron populations 1.23515 0.76186 1.05704 1.03026 1.86429 1.23666 1.25869 1.86553 1.20233 0.91810 0.86810 0.93523 1.21962 1.02193 0.89965 1.05877 1.21477 0.94959 0.96988 0.92819 1.20932 1.00144 0.91178 1.04395 1.23508 0.91884 0.96798 0.99340 1.68056 1.38830 0.97570 1.09043 1.20448 0.89465 0.92364 1.11172 1.18421 0.82718 0.88127 0.77776 1.90706 1.72264 1.30218 1.53331 1.48136 1.05545 1.09503 1.68166 1.22242 0.98111 0.83226 1.01690 1.18625 0.88634 0.82002 0.94972 0.97336 1.21846 0.99267 1.02336 0.95230 1.21530 1.26961 1.06716 1.02563 0.92457 1.25777 0.97327 0.94630 1.00727 1.70029 1.38925 1.09881 1.36803 0.85382 0.78896 0.77354 0.78921 1.18996 1.20741 1.19729 0.90351 0.90487 0.87358 0.80370 0.88742 0.89552 0.88792 0.78397 0.93023 0.92629 0.87163 0.96561 0.90961 0.93633 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.83 113.37 1.11 1.31 16 2 O -0.31 -11.15 8.58 -68.75 -0.59 -11.74 16 3 C 0.13 4.18 6.71 22.93 0.15 4.34 16 4 C -0.17 -3.60 8.80 22.55 0.20 -3.40 16 5 C -0.06 -1.01 5.90 -19.72 -0.12 -1.12 16 6 C -0.11 -0.73 10.03 71.24 0.71 -0.02 16 7 C 0.05 0.99 10.85 84.89 0.92 1.91 16 8 N -0.42 -13.53 5.99 -184.64 -1.11 -14.64 16 9 C 0.00 0.03 6.65 41.93 0.28 0.31 16 10 C 0.54 27.64 7.65 86.78 0.66 28.30 16 11 O -0.58 -34.29 14.50 17.00 0.25 -34.05 16 12 N -0.58 -29.73 2.75 -830.20 -2.29 -32.02 16 13 C 0.09 3.66 8.29 127.77 1.06 4.72 16 14 C 0.26 15.11 2.63 44.24 0.12 15.23 16 15 H 0.01 0.59 6.90 -2.38 -0.02 0.57 16 16 C -0.13 -6.88 8.97 71.98 0.65 -6.24 16 17 C -0.54 -31.88 7.95 25.60 0.20 -31.68 16 18 H 0.06 3.33 7.44 -2.91 -0.02 3.31 16 19 C 0.01 0.86 5.30 84.65 0.45 1.31 16 20 N -0.92 -55.49 11.32 21.45 0.24 -55.24 16 21 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 H 0.08 1.15 7.70 -2.38 -0.02 1.13 16 26 H 0.08 1.15 7.70 -2.39 -0.02 1.13 16 27 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.18 2.24 6.46 -2.91 -0.02 2.22 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.37 8.09 -2.38 -0.02 0.35 16 31 H 0.09 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.33 7.12 -2.39 -0.02 2.32 16 35 H 0.11 4.09 5.16 -5.23 -0.03 4.06 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.07 4.17 6.07 -2.39 -0.01 4.15 16 38 H 0.04 2.24 7.67 -2.39 -0.02 2.22 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -82.66 320.89 5.98 -76.68 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.04 Total: 8.79 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.40 Total: 14.98 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -3.15 Total: -101.90 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.34 Total: -45.79 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -82.66 5.98 -76.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331134907.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.136 kcal (2) G-P(sol) polarization free energy of solvation -82.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds