Wall clock time and date at job start Mon Mar 30 2020 23:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35745 * 116.99933 * 2 1 4 4 C 1.39284 * 120.84419 * 359.71754 * 3 2 1 5 5 C 1.37955 * 119.09217 * 179.77785 * 4 3 2 6 6 C 1.50693 * 119.58966 * 180.24698 * 5 4 3 7 7 N 1.31981 * 120.82084 * 0.51105 * 5 4 3 8 8 C 1.31946 * 121.86169 * 359.73926 * 7 5 4 9 9 C 1.50701 * 119.58948 * 180.02562 * 8 7 5 10 10 N 1.46894 * 109.47098 * 274.98166 * 9 8 7 11 11 C 1.47483 * 110.99912 * 265.96789 * 10 9 8 12 12 C 1.53509 * 87.93199 * 221.29698 * 11 10 9 13 13 O 1.42903 * 114.17483 * 272.37391 * 12 11 10 14 14 C 1.50704 * 114.34271 * 139.68259 * 12 11 10 15 15 H 1.07996 * 119.99915 * 266.07571 * 14 12 11 16 16 C 1.37879 * 120.00116 * 86.07736 * 14 12 11 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00363 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46959 * 89.99658 * 18 16 14 20 20 H 1.48497 * 109.47371 * 210.00118 * 18 16 14 21 21 H 1.48503 * 109.46803 * 329.99882 * 18 16 14 22 22 C 1.47477 * 111.00209 * 169.99720 * 10 9 8 23 23 C 1.37997 * 120.82485 * 0.02562 * 8 7 5 24 24 H 1.08998 * 109.47043 * 59.99849 * 1 2 3 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00250 * 1 2 3 27 27 H 1.07998 * 120.45840 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47997 * 270.25589 * 6 5 4 29 29 H 1.09001 * 109.47344 * 30.26476 * 6 5 4 30 30 H 1.09001 * 109.46951 * 150.25704 * 6 5 4 31 31 H 1.09002 * 109.47053 * 34.97501 * 9 8 7 32 32 H 1.08997 * 109.47537 * 154.97607 * 9 8 7 33 33 H 1.09003 * 113.47316 * 336.06470 * 11 10 9 34 34 H 1.08995 * 113.47716 * 106.53007 * 11 10 9 35 35 H 0.96697 * 114.00425 * 273.84743 * 13 12 11 36 36 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.48132 * 253.46703 * 22 10 9 38 38 H 1.09008 * 113.47576 * 23.93680 * 22 10 9 39 39 H 1.07993 * 120.45268 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 -0.0059 5 6 1.9675 3.5981 -0.0010 6 6 1.1766 4.8808 -0.0017 7 7 3.2865 3.6458 -0.0010 8 6 4.0230 2.5511 -0.0005 9 6 5.5257 2.6652 0.0000 10 7 6.0054 2.8220 -1.3795 11 6 6.3728 1.5181 -1.9626 12 6 7.5981 2.2037 -2.5833 13 8 7.3541 2.7920 -3.8626 14 6 8.8598 1.3808 -2.5378 15 1 9.5560 1.5046 -1.7215 16 6 9.1254 0.4700 -3.5383 17 7 8.2779 0.3197 -4.5326 18 14 10.6897 -0.5494 -3.4823 19 1 10.4319 -1.8112 -2.7430 20 1 11.1238 -0.8665 -4.8665 21 1 11.7569 0.2192 -2.7927 22 6 7.4374 3.1737 -1.4044 23 6 3.4345 1.3029 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2245 2.3567 -0.0101 28 1 0.9859 5.1897 -1.0294 29 1 0.2283 4.7233 0.5123 30 1 1.7434 5.6574 0.5119 31 1 5.8240 3.5325 0.5891 32 1 5.9584 1.7643 0.4351 33 1 6.6278 0.7653 -1.2167 34 1 5.6576 1.1556 -2.7009 35 1 7.4559 2.1789 -4.6034 36 1 8.4645 -0.3213 -5.2363 37 1 7.6244 4.2142 -1.6697 38 1 7.9766 2.8626 -0.5096 39 1 4.0432 0.4108 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331894029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:27 Heat of formation + Delta-G solvation = -12.925481 kcal Electronic energy + Delta-G solvation = -21521.819805 eV Core-core repulsion = 18238.215061 eV Total energy + Delta-G solvation = -3283.604744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65709 -39.15297 -38.22809 -34.55474 -33.03814 -32.02319 -31.45776 -29.17686 -28.04152 -27.10664 -25.72894 -24.83163 -22.98987 -22.03207 -20.93763 -18.59627 -17.69780 -17.22226 -17.00018 -15.98540 -15.62463 -15.10235 -15.01910 -14.58563 -14.33518 -14.19749 -13.83677 -13.83205 -13.29789 -12.68687 -12.57502 -12.46314 -12.19907 -11.96482 -11.69715 -11.54548 -11.44699 -11.24196 -11.03162 -10.77305 -10.61919 -10.28203 -9.95353 -9.31906 -9.29913 -8.86478 -8.72404 -8.59400 -8.14485 -7.86497 -6.25308 -4.35266 1.19934 1.47792 3.03815 3.20478 3.28163 3.31623 3.84524 4.26502 4.31799 4.58465 4.84976 4.90487 4.92583 4.95091 5.06048 5.19508 5.24991 5.38471 5.50964 5.54149 5.57815 5.66905 5.84283 5.98266 6.04038 6.04807 6.13191 6.19953 6.32944 6.42047 6.64954 6.73974 7.07768 7.18621 7.18930 7.37142 7.78236 7.95298 8.04394 8.28307 8.67210 9.34980 9.71974 10.80730 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004196 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.304580 B = 6671.122111 C = 7341.891683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.168 3.832 4 C -0.272 4.272 5 C 0.161 3.839 6 C -0.102 4.102 7 N -0.491 5.491 8 C 0.197 3.803 9 C 0.063 3.937 10 N -0.460 5.460 11 C -0.023 4.023 12 C 0.248 3.752 13 O -0.569 6.569 14 C -0.534 4.534 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.904 3.096 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.006 3.994 23 C -0.202 4.202 24 H 0.057 0.943 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.390 0.610 36 H 0.271 0.729 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.523 1.157 9.611 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.115 3.885 4 C -0.293 4.293 5 C 0.023 3.977 6 C -0.159 4.159 7 N -0.205 5.205 8 C 0.059 3.941 9 C -0.066 4.066 10 N -0.183 5.183 11 C -0.152 4.152 12 C 0.206 3.794 13 O -0.382 6.382 14 C -0.573 4.573 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.539 5.539 18 Si 0.731 3.269 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.123 4.123 23 C -0.224 4.224 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.697 2.593 9.499 17.690 hybrid contribution 0.549 -2.519 0.145 2.582 sum -14.148 0.075 9.644 17.122 Atomic orbital electron populations 1.23087 0.78192 1.04056 1.01483 1.86077 1.21580 1.26554 1.88072 1.19253 0.92298 0.84300 0.92603 1.21888 1.00889 0.92754 1.13760 1.21047 0.90031 0.94395 0.92205 1.20693 0.98311 0.93725 1.03164 1.67394 1.05844 1.32164 1.15113 1.20928 0.96284 0.86859 0.89984 1.21611 0.88459 1.01812 0.94721 1.68957 1.17277 1.19851 1.12183 1.24816 1.00569 0.90839 0.98972 1.19345 0.90436 0.87886 0.81733 1.86038 1.92727 1.42595 1.16809 1.21586 1.06169 1.20542 1.08966 0.91472 1.25067 0.96931 0.96307 0.94802 1.69301 1.36110 1.36529 1.11924 0.86395 0.82799 0.80135 0.77527 1.20439 1.20917 1.19620 1.24081 0.87746 1.01388 0.99079 1.21310 0.91854 0.99973 1.09232 0.92434 0.88071 0.92586 0.84835 0.90262 0.91131 0.90290 0.89656 0.92281 0.92163 0.91425 0.75471 0.91828 0.90823 0.91629 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.84 101.05 0.99 1.22 16 2 O -0.31 -4.17 10.51 -18.94 -0.20 -4.37 16 3 C 0.17 2.52 6.74 -38.82 -0.26 2.25 16 4 C -0.27 -3.60 8.74 -39.30 -0.34 -3.94 16 5 C 0.16 2.35 6.78 -82.64 -0.56 1.79 16 6 C -0.10 -1.06 10.17 36.00 0.37 -0.70 16 7 N -0.49 -8.65 10.19 -5.81 -0.06 -8.71 16 8 C 0.20 3.51 6.36 -82.63 -0.53 2.99 16 9 C 0.06 1.15 5.12 -4.98 -0.03 1.12 16 10 N -0.46 -10.07 6.32 -246.09 -1.55 -11.62 16 11 C -0.02 -0.54 7.13 -7.55 -0.05 -0.59 16 12 C 0.25 6.39 1.57 -91.24 -0.14 6.24 16 13 O -0.57 -15.86 13.53 -35.23 -0.48 -16.34 16 14 C -0.53 -14.28 8.69 -34.44 -0.30 -14.58 16 15 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 17 N -0.90 -24.31 11.02 55.43 0.61 -23.70 16 18 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 C 0.01 0.13 7.09 -7.55 -0.05 0.07 16 23 C -0.20 -3.38 9.68 -39.30 -0.38 -3.76 16 24 H 0.06 0.44 7.70 -51.93 -0.40 0.04 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.39 7.72 -51.93 -0.40 -0.01 16 27 H 0.13 1.32 6.47 -52.49 -0.34 0.98 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 32 H 0.06 1.00 7.20 -51.93 -0.37 0.62 16 33 H 0.06 1.36 7.38 -51.93 -0.38 0.98 16 34 H 0.07 1.71 8.14 -51.93 -0.42 1.28 16 35 H 0.39 10.99 6.33 45.56 0.29 11.28 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.07 1.33 7.87 -51.92 -0.41 0.93 16 39 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 327.43 15.07 4.93 4.93 Total: -1.00 -30.70 327.43 -8.09 -38.78 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.94 Total: 11.78 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.38 Total: -6.11 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -1.00 Total: -44.03 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.68 Total: -20.71 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.70 -8.09 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331894029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.857 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds