Wall clock time and date at job start Mon Mar 30 2020 23:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35745 * 116.99933 * 2 1 4 4 C 1.39284 * 120.84419 * 359.71754 * 3 2 1 5 5 C 1.37955 * 119.09217 * 179.77785 * 4 3 2 6 6 C 1.50693 * 119.58966 * 180.24698 * 5 4 3 7 7 N 1.31981 * 120.82084 * 0.51105 * 5 4 3 8 8 C 1.31946 * 121.86169 * 359.73926 * 7 5 4 9 9 C 1.50701 * 119.58948 * 180.02562 * 8 7 5 10 10 N 1.46894 * 109.47098 * 274.98166 * 9 8 7 11 11 C 1.47483 * 110.99912 * 265.96789 * 10 9 8 12 12 C 1.53509 * 87.93199 * 221.29698 * 11 10 9 13 13 O 1.42903 * 114.17483 * 272.37391 * 12 11 10 14 14 C 1.50704 * 114.34271 * 139.68259 * 12 11 10 15 15 H 1.07996 * 119.99915 * 266.07571 * 14 12 11 16 16 C 1.37879 * 120.00116 * 86.07736 * 14 12 11 17 17 N 1.31514 * 119.99832 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00363 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46959 * 89.99658 * 18 16 14 20 20 H 1.48497 * 109.47371 * 210.00118 * 18 16 14 21 21 H 1.48503 * 109.46803 * 329.99882 * 18 16 14 22 22 C 1.47477 * 111.00209 * 169.99720 * 10 9 8 23 23 C 1.37997 * 120.82485 * 0.02562 * 8 7 5 24 24 H 1.08998 * 109.47043 * 59.99849 * 1 2 3 25 25 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47144 * 300.00250 * 1 2 3 27 27 H 1.07998 * 120.45840 * 0.02562 * 4 3 2 28 28 H 1.08998 * 109.47997 * 270.25589 * 6 5 4 29 29 H 1.09001 * 109.47344 * 30.26476 * 6 5 4 30 30 H 1.09001 * 109.46951 * 150.25704 * 6 5 4 31 31 H 1.09002 * 109.47053 * 34.97501 * 9 8 7 32 32 H 1.08997 * 109.47537 * 154.97607 * 9 8 7 33 33 H 1.09003 * 113.47316 * 336.06470 * 11 10 9 34 34 H 1.08995 * 113.47716 * 106.53007 * 11 10 9 35 35 H 0.96697 * 114.00425 * 273.84743 * 13 12 11 36 36 H 0.96997 * 120.00009 * 180.02562 * 17 16 14 37 37 H 1.08998 * 113.48132 * 253.46703 * 22 10 9 38 38 H 1.09008 * 113.47576 * 23.93680 * 22 10 9 39 39 H 1.07993 * 120.45268 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 -0.0059 5 6 1.9675 3.5981 -0.0010 6 6 1.1766 4.8808 -0.0017 7 7 3.2865 3.6458 -0.0010 8 6 4.0230 2.5511 -0.0005 9 6 5.5257 2.6652 0.0000 10 7 6.0054 2.8220 -1.3795 11 6 6.3728 1.5181 -1.9626 12 6 7.5981 2.2037 -2.5833 13 8 7.3541 2.7920 -3.8626 14 6 8.8598 1.3808 -2.5378 15 1 9.5560 1.5046 -1.7215 16 6 9.1254 0.4700 -3.5383 17 7 8.2779 0.3197 -4.5326 18 14 10.6897 -0.5494 -3.4823 19 1 10.4319 -1.8112 -2.7430 20 1 11.1238 -0.8665 -4.8665 21 1 11.7569 0.2192 -2.7927 22 6 7.4374 3.1737 -1.4044 23 6 3.4345 1.3029 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2245 2.3567 -0.0101 28 1 0.9859 5.1897 -1.0294 29 1 0.2283 4.7233 0.5123 30 1 1.7434 5.6574 0.5119 31 1 5.8240 3.5325 0.5891 32 1 5.9584 1.7643 0.4351 33 1 6.6278 0.7653 -1.2167 34 1 5.6576 1.1556 -2.7009 35 1 7.4559 2.1789 -4.6034 36 1 8.4645 -0.3213 -5.2363 37 1 7.6244 4.2142 -1.6697 38 1 7.9766 2.8626 -0.5096 39 1 4.0432 0.4108 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331894029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:26 Heat of formation + Delta-G solvation = -37.293165 kcal Electronic energy + Delta-G solvation = -21522.876467 eV Core-core repulsion = 18238.215061 eV Total energy + Delta-G solvation = -3284.661406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81329 -40.84799 -39.32768 -36.41939 -34.33742 -34.07090 -32.59300 -30.65188 -28.87997 -28.45034 -27.29726 -26.65365 -24.58142 -23.08690 -22.28926 -20.51817 -19.29985 -18.60255 -18.15776 -17.11588 -16.97320 -16.75152 -16.69686 -16.10690 -15.78493 -15.53029 -15.27398 -15.05579 -14.52151 -14.18221 -13.90475 -13.75709 -13.39015 -13.34241 -13.13953 -13.07988 -12.80124 -12.64335 -12.42477 -12.33192 -12.24180 -12.07327 -11.86443 -11.17761 -10.66072 -10.51048 -10.15103 -9.90675 -9.86480 -9.66791 -8.24862 -6.43048 0.03360 0.32808 1.43412 1.45475 1.56077 2.12239 2.37920 2.64239 2.96228 3.18331 3.34348 3.59473 3.83896 3.99944 4.02843 4.16536 4.23514 4.27417 4.29628 4.34124 4.44100 4.52068 4.57780 4.61632 4.67748 4.74241 4.80285 4.88805 4.89894 5.06497 5.12963 5.18752 5.37569 5.42199 5.59500 5.75333 5.96356 6.20514 6.27424 6.63628 7.10056 7.30389 7.55591 8.80744 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004196 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.304580 B = 6671.122111 C = 7341.891683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.165 3.835 4 C -0.261 4.261 5 C 0.149 3.851 6 C -0.098 4.098 7 N -0.521 5.521 8 C 0.176 3.824 9 C 0.066 3.934 10 N -0.470 5.470 11 C -0.007 4.007 12 C 0.219 3.781 13 O -0.585 6.585 14 C -0.556 4.556 15 H 0.071 0.929 16 C 0.026 3.974 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.016 3.984 23 C -0.224 4.224 24 H 0.067 0.933 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.383 0.617 36 H 0.274 0.726 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.909 0.920 10.774 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.111 3.889 4 C -0.282 4.282 5 C 0.011 3.989 6 C -0.155 4.155 7 N -0.236 5.236 8 C 0.039 3.961 9 C -0.063 4.063 10 N -0.192 5.192 11 C -0.136 4.136 12 C 0.178 3.822 13 O -0.397 6.397 14 C -0.594 4.594 15 H 0.089 0.911 16 C -0.174 4.174 17 N -0.563 5.563 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.113 4.113 23 C -0.245 4.245 24 H 0.086 0.914 25 H 0.141 0.859 26 H 0.093 0.907 27 H 0.190 0.810 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.103 2.363 10.680 19.467 hybrid contribution 0.817 -2.447 -0.201 2.588 sum -15.286 -0.084 10.478 18.533 Atomic orbital electron populations 1.23481 0.75479 1.06109 1.02855 1.86064 1.24383 1.25925 1.87714 1.19356 0.91951 0.85571 0.91973 1.22254 1.02700 0.91485 1.11731 1.21763 0.89388 0.96591 0.91150 1.20808 0.99122 0.91631 1.03988 1.67380 1.07582 1.32261 1.16376 1.20805 0.95971 0.87584 0.91745 1.21599 0.89407 1.02707 0.92544 1.68847 1.16951 1.18493 1.14923 1.24544 0.98914 0.91649 0.98532 1.19741 0.91152 0.89636 0.81668 1.86019 1.92957 1.43019 1.17657 1.21857 1.06817 1.21190 1.09540 0.91124 1.25860 0.99896 0.97272 0.94342 1.69387 1.37584 1.36971 1.12398 0.85357 0.78979 0.78570 0.77529 1.19775 1.20665 1.19113 1.24004 0.88404 1.00494 0.98373 1.21343 0.93250 0.99420 1.10524 0.91429 0.85913 0.90683 0.80996 0.89617 0.87733 0.90599 0.88710 0.91241 0.91533 0.94016 0.76217 0.91596 0.91067 0.89574 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.84 113.37 1.12 1.31 16 2 O -0.33 -8.30 10.51 -90.69 -0.95 -9.26 16 3 C 0.17 4.74 6.74 22.76 0.15 4.90 16 4 C -0.26 -6.27 8.74 22.45 0.20 -6.07 16 5 C 0.15 4.07 6.78 42.47 0.29 4.35 16 6 C -0.10 -1.80 10.17 71.23 0.72 -1.07 16 7 N -0.52 -18.13 10.19 -172.31 -1.76 -19.89 16 8 C 0.18 6.31 6.36 42.48 0.27 6.58 16 9 C 0.07 2.41 5.12 85.56 0.44 2.85 16 10 N -0.47 -20.80 6.32 -932.89 -5.89 -26.69 16 11 C -0.01 -0.33 7.13 83.57 0.60 0.27 16 12 C 0.22 11.51 1.57 -11.20 -0.02 11.49 16 13 O -0.58 -33.57 13.53 -148.98 -2.02 -35.59 16 14 C -0.56 -29.91 8.69 25.60 0.22 -29.69 16 15 H 0.07 3.65 7.81 -2.91 -0.02 3.62 16 16 C 0.03 1.36 5.39 84.66 0.46 1.82 16 17 N -0.92 -50.69 11.02 21.45 0.24 -50.45 16 18 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 C 0.02 0.71 7.09 83.57 0.59 1.30 16 23 C -0.22 -7.54 9.68 22.45 0.22 -7.32 16 24 H 0.07 0.81 7.70 -2.39 -0.02 0.79 16 25 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 0.76 7.72 -2.39 -0.02 0.74 16 27 H 0.17 2.65 6.47 -2.91 -0.02 2.63 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 3.22 8.08 -2.39 -0.02 3.20 16 32 H 0.07 2.35 7.20 -2.39 -0.02 2.33 16 33 H 0.07 3.07 7.38 -2.39 -0.02 3.05 16 34 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.38 22.43 6.33 -74.06 -0.47 21.96 16 36 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.09 3.45 7.87 -2.38 -0.02 3.43 16 39 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -67.11 327.43 -2.51 -69.62 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.59 Total: 37.88 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.25 Total: -9.29 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -7.41 Total: -97.03 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.97 Total: -44.84 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -67.11 -2.51 -69.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331894029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.325 kcal (2) G-P(sol) polarization free energy of solvation -67.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds