Wall clock time and date at job start Tue Mar 31 2020 00:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34511 * 125.79024 * 2 1 4 4 C 1.41379 * 106.84091 * 179.97438 * 3 2 1 5 5 C 1.34513 * 106.84189 * 0.22372 * 4 3 2 6 6 C 1.50706 * 125.79253 * 179.77248 * 5 4 3 7 7 H 1.09001 * 109.87725 * 358.80065 * 6 5 4 8 8 C 1.54320 * 109.88713 * 237.77057 * 6 5 4 9 9 C 1.55401 * 102.89510 * 218.40472 * 8 6 5 10 10 C 1.54906 * 101.74246 * 35.48085 * 9 8 6 11 11 N 1.47441 * 109.88947 * 119.83180 * 6 5 4 12 12 C 1.46900 * 110.99834 * 356.14812 * 11 6 5 13 13 C 1.50706 * 109.47069 * 177.77835 * 12 11 6 14 14 O 1.21286 * 119.99614 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99825 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99708 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99768 * 0.02562 * 16 15 13 18 18 C 1.38945 * 119.99870 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00296 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46832 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46992 * 119.99729 * 20 18 16 23 23 H 1.48495 * 109.46887 * 240.00258 * 20 18 16 24 24 O 1.34304 * 108.41983 * 359.63389 * 5 4 3 25 25 H 1.08996 * 109.46565 * 90.00038 * 1 2 3 26 26 H 1.09001 * 109.46737 * 210.00248 * 1 2 3 27 27 H 1.08997 * 109.46808 * 329.99934 * 1 2 3 28 28 H 1.07996 * 126.58098 * 359.94197 * 3 2 1 29 29 H 1.08001 * 126.58284 * 179.97438 * 4 3 2 30 30 H 1.08995 * 110.70676 * 336.68666 * 8 6 5 31 31 H 1.08999 * 110.70482 * 99.93014 * 8 6 5 32 32 H 1.08993 * 110.87371 * 277.39454 * 9 8 6 33 33 H 1.09001 * 111.05367 * 153.64795 * 9 8 6 34 34 H 1.09000 * 110.37669 * 204.18388 * 10 9 8 35 35 H 1.09010 * 110.37309 * 81.84787 * 10 9 8 36 36 H 1.09005 * 109.47353 * 297.77455 * 12 11 6 37 37 H 1.08999 * 109.47259 * 57.78053 * 12 11 6 38 38 H 0.96998 * 120.00351 * 359.97438 * 15 13 12 39 39 H 0.96999 * 120.00588 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 3.5814 -0.7122 -0.0041 6 6 4.7706 -1.6379 -0.0102 7 1 5.6926 -1.0568 -0.0317 8 6 4.7066 -2.5667 -1.2409 9 6 5.2183 -3.9224 -0.6794 10 6 4.6431 -3.9051 0.7588 11 7 4.7456 -2.4946 1.1896 12 6 3.6292 -2.1313 2.0726 13 6 3.6033 -3.0614 3.2581 14 8 4.4329 -3.9406 3.3574 15 7 2.6576 -2.9167 4.2075 16 6 2.6337 -3.7632 5.2858 17 1 3.3729 -4.5455 5.3746 18 6 1.6592 -3.6137 6.2648 19 7 0.7607 -2.6609 6.1575 20 14 1.6270 -4.7665 7.7344 21 1 2.7382 -5.7451 7.6202 22 1 1.7858 -3.9801 8.9839 23 1 0.3313 -5.4912 7.7667 24 8 2.2925 -1.0895 0.0007 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9667 2.1203 -0.0009 29 1 4.5213 1.2432 0.0004 30 1 3.6817 -2.6610 -1.5997 31 1 5.3614 -2.2029 -2.0327 32 1 6.3078 -3.9498 -0.6638 33 1 4.8167 -4.7594 -1.2505 34 1 5.2356 -4.5455 1.4122 35 1 3.6013 -4.2260 0.7547 36 1 3.7582 -1.1056 2.4182 37 1 2.6906 -2.2148 1.5247 38 1 1.9940 -2.2138 4.1279 39 1 0.0801 -2.5567 6.8408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332397646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:31 Heat of formation + Delta-G solvation = -11.066702 kcal Electronic energy + Delta-G solvation = -22230.384424 eV Core-core repulsion = 18946.860283 eV Total energy + Delta-G solvation = -3283.524141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -42.66864 -39.13987 -37.44063 -33.91099 -33.10717 -32.23244 -31.77843 -31.10002 -29.22795 -26.64127 -25.48357 -24.19267 -21.76538 -21.19940 -21.07228 -19.78721 -19.09879 -17.84523 -16.66584 -16.45827 -15.66958 -15.19611 -15.14304 -14.43000 -14.26800 -13.93164 -13.77506 -13.33304 -13.14864 -12.93772 -12.84839 -12.73549 -12.52276 -12.00720 -11.87083 -11.75958 -11.48567 -11.22252 -11.09932 -10.93427 -10.76852 -10.56608 -10.31401 -10.19474 -9.77170 -9.46909 -8.52532 -8.13312 -7.93700 -7.79498 -6.38347 -3.78986 1.77937 2.68900 2.94816 3.18379 3.28316 3.35790 3.96195 4.10343 4.32866 4.55810 4.68466 4.87660 4.93443 5.11738 5.21005 5.22879 5.30040 5.37785 5.42843 5.52700 5.63956 5.69731 5.83523 5.85709 5.87423 5.97205 6.01881 6.06974 6.15233 6.28033 6.35410 6.37696 6.62416 6.64298 7.22161 7.29830 7.34437 7.58344 8.09760 8.65457 9.21347 9.58276 10.10147 10.79636 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.005491 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.774218 B = 5098.120704 C = 6295.205903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.016 4.016 3 C -0.213 4.213 4 C -0.202 4.202 5 C -0.020 4.020 6 C 0.149 3.851 7 H 0.114 0.886 8 C -0.136 4.136 9 C -0.133 4.133 10 C 0.053 3.947 11 N -0.496 5.496 12 C 0.036 3.964 13 C 0.445 3.555 14 O -0.581 6.581 15 N -0.564 5.564 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.282 1.282 24 O -0.169 6.169 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.392 0.608 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.358 6.294 -15.280 16.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.233 4.233 4 C -0.222 4.222 5 C -0.071 4.071 6 C 0.041 3.959 7 H 0.131 0.869 8 C -0.174 4.174 9 C -0.171 4.171 10 C -0.074 4.074 11 N -0.220 5.220 12 C -0.095 4.095 13 C 0.230 3.770 14 O -0.465 6.465 15 N -0.200 5.200 16 C -0.426 4.426 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 O -0.066 6.066 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.225 0.775 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.118 5.503 -14.768 15.902 hybrid contribution -1.289 0.277 0.390 1.375 sum 0.829 5.780 -14.378 15.519 Atomic orbital electron populations 1.20311 0.85335 1.04403 1.03096 1.22499 0.94063 0.84415 1.05603 1.21495 0.92694 0.99190 1.09873 1.21532 0.98144 0.93687 1.08830 1.22860 0.83274 0.94909 1.06079 1.21434 0.91481 0.92121 0.90902 0.86853 1.22898 1.02019 0.95603 0.96892 1.22850 1.01290 0.96394 0.96534 1.23111 1.00315 0.89810 0.94166 1.63694 1.42600 1.03209 1.12476 1.22321 0.92883 0.99754 0.94526 1.19744 0.84412 0.87635 0.85164 1.90481 1.40632 1.36734 1.78663 1.41845 1.27263 1.30957 1.19971 1.19754 1.13332 1.11441 0.98121 0.87861 1.25258 0.95716 0.97645 0.99388 1.69625 1.16775 1.32103 1.35881 0.85806 0.78197 0.79801 0.80578 1.19220 1.20752 1.20803 1.84108 1.16302 1.34887 1.71298 0.90429 0.90289 0.89391 0.83745 0.83615 0.91110 0.90470 0.90587 0.90901 0.87872 0.94002 0.89671 0.91820 0.77541 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.01 0.38 -0.39 16 2 C -0.02 -0.21 7.32 -35.62 -0.26 -0.47 16 3 C -0.21 -2.76 10.81 -39.70 -0.43 -3.19 16 4 C -0.20 -2.72 10.79 -39.70 -0.43 -3.14 16 5 C -0.02 -0.30 4.00 -35.62 -0.14 -0.44 16 6 C 0.15 2.12 3.88 -67.87 -0.26 1.86 16 7 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 8 C -0.14 -1.65 6.48 -24.76 -0.16 -1.81 16 9 C -0.13 -1.70 7.08 -24.45 -0.17 -1.87 16 10 C 0.05 0.93 5.23 -2.30 -0.01 0.92 16 11 N -0.50 -8.94 5.08 -226.15 -1.15 -10.08 16 12 C 0.04 0.73 4.20 -4.97 -0.02 0.71 16 13 C 0.44 11.09 7.46 -10.98 -0.08 11.01 16 14 O -0.58 -16.00 13.69 5.55 0.08 -15.92 16 15 N -0.56 -14.95 5.29 -10.96 -0.06 -15.01 16 16 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 17 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -25.07 13.05 55.50 0.72 -24.35 16 20 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 O -0.17 -2.65 8.11 5.70 0.05 -2.61 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.10 2.05 6.88 -51.93 -0.36 1.70 16 35 H 0.04 0.79 7.75 -51.92 -0.40 0.38 16 36 H 0.09 1.69 7.64 -51.93 -0.40 1.29 16 37 H 0.06 1.27 5.43 -51.93 -0.28 0.99 16 38 H 0.39 10.08 7.90 -40.82 -0.32 9.76 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -32.00 320.83 -7.86 -39.86 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.48 Total: 11.88 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.84 Total: -4.98 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.48 Total: -49.44 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.12 Total: -18.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.00 -7.86 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332397646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.796 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds