Wall clock time and date at job start Tue Mar 31 2020 00:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.34511 * 125.79024 * 2 1 4 4 C 1.41379 * 106.84091 * 179.97438 * 3 2 1 5 5 C 1.34513 * 106.84189 * 0.22372 * 4 3 2 6 6 C 1.50706 * 125.79253 * 179.77248 * 5 4 3 7 7 H 1.09001 * 109.87725 * 358.80065 * 6 5 4 8 8 C 1.54320 * 109.88713 * 237.77057 * 6 5 4 9 9 C 1.55401 * 102.89510 * 218.40472 * 8 6 5 10 10 C 1.54906 * 101.74246 * 35.48085 * 9 8 6 11 11 N 1.47441 * 109.88947 * 119.83180 * 6 5 4 12 12 C 1.46900 * 110.99834 * 356.14812 * 11 6 5 13 13 C 1.50706 * 109.47069 * 177.77835 * 12 11 6 14 14 O 1.21286 * 119.99614 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99825 * 180.02562 * 13 12 11 16 16 C 1.37104 * 119.99708 * 179.97438 * 15 13 12 17 17 H 1.07998 * 119.99768 * 0.02562 * 16 15 13 18 18 C 1.38945 * 119.99870 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00296 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46832 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46992 * 119.99729 * 20 18 16 23 23 H 1.48495 * 109.46887 * 240.00258 * 20 18 16 24 24 O 1.34304 * 108.41983 * 359.63389 * 5 4 3 25 25 H 1.08996 * 109.46565 * 90.00038 * 1 2 3 26 26 H 1.09001 * 109.46737 * 210.00248 * 1 2 3 27 27 H 1.08997 * 109.46808 * 329.99934 * 1 2 3 28 28 H 1.07996 * 126.58098 * 359.94197 * 3 2 1 29 29 H 1.08001 * 126.58284 * 179.97438 * 4 3 2 30 30 H 1.08995 * 110.70676 * 336.68666 * 8 6 5 31 31 H 1.08999 * 110.70482 * 99.93014 * 8 6 5 32 32 H 1.08993 * 110.87371 * 277.39454 * 9 8 6 33 33 H 1.09001 * 111.05367 * 153.64795 * 9 8 6 34 34 H 1.09000 * 110.37669 * 204.18388 * 10 9 8 35 35 H 1.09010 * 110.37309 * 81.84787 * 10 9 8 36 36 H 1.09005 * 109.47353 * 297.77455 * 12 11 6 37 37 H 1.08999 * 109.47259 * 57.78053 * 12 11 6 38 38 H 0.96998 * 120.00351 * 359.97438 * 15 13 12 39 39 H 0.96999 * 120.00588 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 0.0006 5 6 3.5814 -0.7122 -0.0041 6 6 4.7706 -1.6379 -0.0102 7 1 5.6926 -1.0568 -0.0317 8 6 4.7066 -2.5667 -1.2409 9 6 5.2183 -3.9224 -0.6794 10 6 4.6431 -3.9051 0.7588 11 7 4.7456 -2.4946 1.1896 12 6 3.6292 -2.1313 2.0726 13 6 3.6033 -3.0614 3.2581 14 8 4.4329 -3.9406 3.3574 15 7 2.6576 -2.9167 4.2075 16 6 2.6337 -3.7632 5.2858 17 1 3.3729 -4.5455 5.3746 18 6 1.6592 -3.6137 6.2648 19 7 0.7607 -2.6609 6.1575 20 14 1.6270 -4.7665 7.7344 21 1 2.7382 -5.7451 7.6202 22 1 1.7858 -3.9801 8.9839 23 1 0.3313 -5.4912 7.7667 24 8 2.2925 -1.0895 0.0007 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9667 2.1203 -0.0009 29 1 4.5213 1.2432 0.0004 30 1 3.6817 -2.6610 -1.5997 31 1 5.3614 -2.2029 -2.0327 32 1 6.3078 -3.9498 -0.6638 33 1 4.8167 -4.7594 -1.2505 34 1 5.2356 -4.5455 1.4122 35 1 3.6013 -4.2260 0.7547 36 1 3.7582 -1.1056 2.4182 37 1 2.6906 -2.2148 1.5247 38 1 1.9940 -2.2138 4.1279 39 1 0.0801 -2.5567 6.8408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332397646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:31 Heat of formation + Delta-G solvation = -33.186513 kcal Electronic energy + Delta-G solvation = -22231.343611 eV Core-core repulsion = 18946.860283 eV Total energy + Delta-G solvation = -3284.483328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.73068 -40.71212 -39.14707 -36.00514 -34.13868 -33.51521 -33.15312 -32.94551 -30.29465 -28.36751 -26.51573 -26.10170 -22.81760 -22.42070 -22.25011 -21.16053 -20.71239 -19.90617 -18.14493 -17.70588 -17.05476 -16.68958 -16.48753 -16.19021 -15.96155 -15.64122 -15.09686 -14.44762 -14.39702 -14.28171 -13.90260 -13.83631 -13.72635 -13.56472 -13.30076 -13.13509 -12.92455 -12.80343 -12.49416 -12.43442 -12.15529 -12.08922 -11.97316 -11.68666 -11.51687 -10.81266 -10.33790 -10.05469 -9.53280 -9.05144 -8.49598 -5.99227 0.72907 1.34440 1.39541 1.54573 1.68597 1.90675 2.02676 2.26086 2.78413 3.16021 3.32058 3.52469 3.72527 3.76969 3.99355 4.14342 4.20390 4.27154 4.34421 4.40289 4.43309 4.54915 4.57826 4.69766 4.82159 4.87795 4.89767 4.93942 5.02676 5.13108 5.19638 5.28148 5.30413 5.37751 5.67342 5.77617 5.94394 6.02485 6.26419 6.54907 7.07964 7.48909 8.04185 8.68424 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.005491 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.774218 B = 5098.120704 C = 6295.205903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.031 4.031 3 C -0.219 4.219 4 C -0.199 4.199 5 C -0.045 4.045 6 C 0.147 3.853 7 H 0.135 0.865 8 C -0.125 4.125 9 C -0.119 4.119 10 C 0.051 3.949 11 N -0.511 5.511 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.611 6.611 15 N -0.572 5.572 16 C -0.334 4.334 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.997 3.003 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.269 1.269 24 O -0.193 6.193 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.106 0.894 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.017 0.983 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.393 0.607 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 7.399 -16.253 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 C -0.238 4.238 4 C -0.219 4.219 5 C -0.095 4.095 6 C 0.039 3.961 7 H 0.152 0.848 8 C -0.163 4.163 9 C -0.157 4.157 10 C -0.076 4.076 11 N -0.236 5.236 12 C -0.072 4.072 13 C 0.226 3.774 14 O -0.497 6.497 15 N -0.209 5.209 16 C -0.463 4.463 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.562 5.562 20 Si 0.820 3.180 21 H -0.197 1.197 22 H -0.194 1.194 23 H -0.194 1.194 24 O -0.091 6.091 25 H 0.116 0.884 26 H 0.085 0.915 27 H 0.124 0.876 28 H 0.186 0.814 29 H 0.185 0.815 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.046 6.635 -15.763 17.225 hybrid contribution -1.284 -0.015 0.664 1.445 sum 0.762 6.621 -15.100 16.505 Atomic orbital electron populations 1.20463 0.83444 1.04679 1.04538 1.23189 0.95394 0.84248 1.05263 1.21854 0.92425 1.00185 1.09342 1.21887 0.99234 0.93414 1.07371 1.22977 0.83134 0.95555 1.07806 1.21599 0.92368 0.92130 0.89978 0.84785 1.22881 1.02348 0.94373 0.96738 1.22802 1.02023 0.97722 0.93161 1.22988 0.98578 0.89253 0.96817 1.63637 1.41466 1.03995 1.14452 1.22021 0.94140 0.98165 0.92851 1.20640 0.83226 0.87686 0.85820 1.90457 1.41590 1.38176 1.79522 1.41918 1.27830 1.30940 1.20191 1.19732 1.14235 1.12352 1.00001 0.90139 1.26104 0.94690 0.98983 1.01537 1.69690 1.16880 1.32797 1.36836 0.84825 0.78368 0.77734 0.77108 1.19703 1.19431 1.19422 1.84067 1.17006 1.36163 1.71903 0.88364 0.91463 0.87589 0.81392 0.81546 0.91915 0.87048 0.89062 0.89207 0.91162 0.96404 0.89312 0.91580 0.77372 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.42 71.24 0.74 -0.70 16 2 C -0.03 -0.82 7.32 24.84 0.18 -0.63 16 3 C -0.22 -5.22 10.81 22.19 0.24 -4.98 16 4 C -0.20 -4.94 10.79 22.19 0.24 -4.70 16 5 C -0.04 -1.26 4.00 24.83 0.10 -1.16 16 6 C 0.15 3.95 3.88 44.52 0.17 4.12 16 7 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 8 C -0.13 -2.75 6.48 31.87 0.21 -2.54 16 9 C -0.12 -2.88 7.08 32.07 0.23 -2.65 16 10 C 0.05 1.84 5.23 86.77 0.45 2.29 16 11 N -0.51 -18.51 5.08 -869.40 -4.42 -22.93 16 12 C 0.06 2.44 4.20 85.56 0.36 2.80 16 13 C 0.44 22.80 7.46 87.66 0.65 23.46 16 14 O -0.61 -35.33 13.69 -3.05 -0.04 -35.37 16 15 N -0.57 -31.48 5.29 -306.98 -1.62 -33.10 16 16 C -0.33 -19.71 9.68 84.04 0.81 -18.90 16 17 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 19 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 20 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 O -0.19 -5.99 8.11 -2.51 -0.02 -6.01 16 25 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 30 H 0.06 1.50 7.74 -2.39 -0.02 1.48 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.95 6.88 -2.39 -0.02 2.94 16 35 H 0.02 0.70 7.75 -2.38 -0.02 0.68 16 36 H 0.09 3.56 7.64 -2.38 -0.02 3.54 16 37 H 0.07 2.72 5.43 -2.39 -0.01 2.70 16 38 H 0.39 20.93 7.90 -92.71 -0.73 20.20 16 39 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -70.84 320.83 1.39 -69.45 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.33 Total: 36.81 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 4.86 Total: -3.87 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.76 Total: -106.91 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.06 Total: -41.38 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -70.84 1.39 -69.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332397646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.263 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds