Wall clock time and date at job start Tue Mar 31 2020 00:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 125.57082 * 2 1 4 4 C 1.46687 * 106.32991 * 179.76337 * 3 2 1 5 5 C 1.47266 * 126.94218 * 180.24322 * 4 3 2 6 6 O 1.21625 * 120.00065 * 180.14666 * 5 4 3 7 7 N 1.34778 * 119.99728 * 0.14298 * 5 4 3 8 8 C 1.47066 * 136.06285 * 359.63282 * 7 5 4 9 9 C 1.53755 * 87.89123 * 152.96111 * 8 7 5 10 10 O 1.42895 * 114.39803 * 272.68058 * 9 8 7 11 11 C 1.50703 * 114.26511 * 139.79270 * 9 8 7 12 12 H 1.07998 * 120.00090 * 266.47666 * 11 9 8 13 13 C 1.37880 * 119.99717 * 86.47846 * 11 9 8 14 14 N 1.31519 * 119.99449 * 179.97438 * 13 11 9 15 15 Si 1.86794 * 120.00134 * 359.97438 * 13 11 9 16 16 H 1.48503 * 109.47287 * 89.99958 * 15 13 11 17 17 H 1.48504 * 109.46876 * 210.00012 * 15 13 11 18 18 H 1.48507 * 109.47206 * 329.99761 * 15 13 11 19 19 C 1.47075 * 136.05455 * 180.02562 * 7 5 4 20 20 C 1.36763 * 106.11655 * 0.36174 * 4 3 2 21 21 C 1.50703 * 125.80214 * 179.90173 * 20 4 3 22 22 N 1.34655 * 108.39820 * 359.63845 * 20 4 3 23 23 C 1.46495 * 124.85282 * 180.22156 * 22 20 4 24 24 H 1.09005 * 109.46796 * 270.02604 * 1 2 3 25 25 H 1.08997 * 109.47086 * 30.01744 * 1 2 3 26 26 H 1.09000 * 109.47224 * 150.02237 * 1 2 3 27 27 H 1.08004 * 126.83639 * 359.97438 * 3 2 1 28 28 H 1.09000 * 113.46799 * 267.69961 * 8 7 5 29 29 H 1.09007 * 113.46367 * 38.13134 * 8 7 5 30 30 H 0.96704 * 114.00195 * 273.58753 * 10 9 8 31 31 H 0.96999 * 119.99588 * 180.02562 * 14 13 11 32 32 H 1.09001 * 113.46360 * 321.86287 * 19 7 5 33 33 H 1.08990 * 113.46826 * 92.24600 * 19 7 5 34 34 H 1.09002 * 109.47152 * 269.71596 * 21 20 4 35 35 H 1.09001 * 109.46980 * 149.71697 * 21 20 4 36 36 H 1.09004 * 109.47113 * 29.71678 * 21 20 4 37 37 H 1.08996 * 109.47448 * 90.00214 * 23 22 20 38 38 H 1.09007 * 109.47143 * 209.99528 * 23 22 20 39 39 H 1.09000 * 109.47290 * 329.99736 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0058 5 6 4.8978 1.4301 0.0130 6 8 5.9892 0.8935 0.0146 7 7 4.8080 2.7749 0.0176 8 6 3.7193 3.7636 0.0110 9 6 4.6743 4.7358 0.7229 10 8 4.6761 4.6245 2.1475 11 6 4.5845 6.1594 0.2367 12 1 5.2497 6.5080 -0.5394 13 6 3.6530 7.0169 0.7829 14 7 3.5750 8.2594 0.3589 15 14 2.5020 6.4137 2.1247 16 1 3.1260 6.6439 3.4525 17 1 1.2180 7.1557 2.0458 18 1 2.2469 4.9621 1.9426 19 6 5.7558 3.8995 0.0245 20 6 3.5998 -0.7551 0.0005 21 6 4.7722 -1.7020 0.0015 22 7 2.3008 -1.1098 0.0003 23 6 1.8099 -2.4901 0.0000 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.9629 2.1234 -0.0004 28 1 3.4347 4.0892 -0.9895 29 1 2.8632 3.4706 0.6189 30 1 3.9937 5.1525 2.5842 31 1 2.9200 8.8627 0.7434 32 1 6.6350 3.7222 0.6439 33 1 6.0085 4.2602 -0.9725 34 1 5.0555 -1.9305 -1.0260 35 1 4.4953 -2.6225 0.5153 36 1 5.6137 -1.2378 0.5157 37 1 1.6880 -2.8326 1.0275 38 1 0.8496 -2.5341 -0.5140 39 1 2.5267 -3.1306 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334240688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:19 Heat of formation + Delta-G solvation = 18.373105 kcal Electronic energy + Delta-G solvation = -22120.699662 eV Core-core repulsion = 18838.452127 eV Total energy + Delta-G solvation = -3282.247535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34812 -39.49467 -37.30544 -34.46373 -32.89711 -32.54514 -32.49389 -29.34767 -28.87334 -26.81590 -25.40794 -25.12631 -24.32580 -21.51636 -20.06127 -19.23869 -17.91092 -17.32946 -16.56513 -16.23985 -15.81092 -15.57865 -14.97913 -14.58444 -13.95454 -13.67916 -13.45016 -13.34749 -13.27069 -13.17657 -12.85314 -12.53188 -12.48319 -12.45095 -12.24060 -12.14596 -12.00265 -11.67540 -11.34236 -11.02441 -10.79677 -10.49187 -10.04825 -9.60671 -9.15212 -8.95968 -8.56233 -8.47439 -8.00008 -7.70377 -6.38239 -4.43267 1.99308 2.52529 2.78493 3.03214 3.08296 3.17996 3.70643 4.04904 4.07194 4.55425 4.68476 4.72644 4.86483 4.89298 5.05732 5.11385 5.18711 5.27544 5.37609 5.44697 5.64800 5.69151 5.73268 5.76599 6.00185 6.05471 6.19550 6.23922 6.32613 6.44017 6.49165 6.67647 6.71569 6.97323 7.20145 7.27126 7.32673 8.06279 8.52951 8.59704 8.66047 8.91992 9.20038 10.74028 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.005501 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.224331 B = 5088.892512 C = 5958.664491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.000 4.000 3 C -0.162 4.162 4 C -0.217 4.217 5 C 0.613 3.387 6 O -0.570 6.570 7 N -0.630 5.630 8 C 0.063 3.937 9 C 0.193 3.807 10 O -0.549 6.549 11 C -0.531 4.531 12 H 0.092 0.908 13 C 0.080 3.920 14 N -0.877 5.877 15 Si 0.858 3.142 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.256 1.256 19 C 0.123 3.877 20 C 0.094 3.906 21 C -0.089 4.089 22 N -0.445 5.445 23 C 0.069 3.931 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.149 0.851 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.350 0.650 31 H 0.270 0.730 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -18.125 -0.853 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.185 4.185 4 C -0.226 4.226 5 C 0.406 3.594 6 O -0.452 6.452 7 N -0.363 5.363 8 C -0.060 4.060 9 C 0.152 3.848 10 O -0.360 6.360 11 C -0.569 4.569 12 H 0.110 0.890 13 C -0.125 4.125 14 N -0.513 5.513 15 Si 0.687 3.313 16 H -0.193 1.193 17 H -0.211 1.211 18 H -0.181 1.181 19 C 0.001 3.999 20 C -0.022 4.022 21 C -0.146 4.146 22 N -0.123 5.123 23 C -0.073 4.073 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.202 0.798 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.995 -19.156 -0.964 20.416 hybrid contribution -1.358 0.215 0.773 1.578 sum -8.353 -18.940 -0.191 20.701 Atomic orbital electron populations 1.20293 0.88001 1.02999 1.02464 1.20183 0.93398 0.85528 1.11635 1.22161 0.91116 0.97947 1.07323 1.20114 0.93122 0.91885 1.17492 1.16764 0.87413 0.79563 0.75694 1.90661 1.28974 1.71515 1.54085 1.49357 1.12642 1.02882 1.71377 1.24512 0.92945 0.86850 1.01693 1.20328 0.92209 0.93594 0.78664 1.86480 1.58250 1.71335 1.19945 1.21173 1.20305 0.92281 1.23155 0.88957 1.24992 0.96537 0.94741 0.96228 1.69858 1.35036 1.04632 1.41778 0.87335 0.81300 0.79720 0.82978 1.19328 1.21069 1.18105 1.23110 0.94678 0.81999 1.00121 1.20197 0.84459 0.94014 1.03528 1.20514 0.94869 0.96205 1.03032 1.43376 1.05126 1.06152 1.57615 1.22009 1.01306 0.80769 1.03208 0.91231 0.90050 0.92079 0.83353 0.89044 0.91545 0.79754 0.91935 0.91106 0.88962 0.90840 0.92330 0.88005 0.90961 0.89802 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.06 36.01 0.36 -0.39 16 2 C 0.00 0.00 6.85 -81.86 -0.56 -0.57 16 3 C -0.16 -2.71 10.01 -37.50 -0.38 -3.08 16 4 C -0.22 -4.06 6.29 -103.35 -0.65 -4.71 16 5 C 0.61 13.35 8.06 -12.59 -0.10 13.24 16 6 O -0.57 -13.29 15.58 5.26 0.08 -13.20 16 7 N -0.63 -13.79 3.69 -186.36 -0.69 -14.48 16 8 C 0.06 1.35 6.07 -8.37 -0.05 1.30 16 9 C 0.19 4.58 1.10 -91.11 -0.10 4.48 16 10 O -0.55 -13.53 13.33 -35.23 -0.47 -14.00 16 11 C -0.53 -13.96 9.28 -34.44 -0.32 -14.28 16 12 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.88 -24.72 13.96 55.43 0.77 -23.94 16 15 Si 0.86 19.25 24.42 -169.99 -4.15 15.10 16 16 H -0.27 -5.87 7.06 56.52 0.40 -5.47 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.26 -5.45 5.50 56.52 0.31 -5.14 16 19 C 0.12 2.72 8.02 -8.49 -0.07 2.65 16 20 C 0.09 1.46 6.89 -81.89 -0.56 0.89 16 21 C -0.09 -1.16 9.27 36.01 0.33 -0.82 16 22 N -0.44 -5.68 3.09 -115.28 -0.36 -6.04 16 23 C 0.07 0.52 10.40 59.84 0.62 1.15 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 27 H 0.15 2.47 5.48 -52.48 -0.29 2.19 16 28 H 0.09 1.84 8.10 -51.93 -0.42 1.42 16 29 H 0.07 1.37 5.13 -51.92 -0.27 1.10 16 30 H 0.35 8.19 3.16 45.56 0.14 8.33 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.09 1.88 8.10 -51.93 -0.42 1.46 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.57 7.58 -51.93 -0.39 0.18 16 36 H 0.10 1.58 6.45 -51.93 -0.33 1.24 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.48 6.90 -51.93 -0.36 0.12 16 39 H 0.08 0.52 7.49 -51.93 -0.39 0.13 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -32.65 313.90 -6.50 -39.15 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.85 Total: 10.80 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.57 Total: 1.88 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.27 Total: -44.46 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.39 Total: -27.20 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.15 Total: 15.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.65 -6.50 -39.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334240688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.523 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds