Wall clock time and date at job start Tue Mar 31 2020 00:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 125.57082 * 2 1 4 4 C 1.46687 * 106.32991 * 179.76337 * 3 2 1 5 5 C 1.47266 * 126.94218 * 180.24322 * 4 3 2 6 6 O 1.21625 * 120.00065 * 180.14666 * 5 4 3 7 7 N 1.34778 * 119.99728 * 0.14298 * 5 4 3 8 8 C 1.47066 * 136.06285 * 359.63282 * 7 5 4 9 9 C 1.53755 * 87.89123 * 152.96111 * 8 7 5 10 10 O 1.42895 * 114.39803 * 272.68058 * 9 8 7 11 11 C 1.50703 * 114.26511 * 139.79270 * 9 8 7 12 12 H 1.07998 * 120.00090 * 266.47666 * 11 9 8 13 13 C 1.37880 * 119.99717 * 86.47846 * 11 9 8 14 14 N 1.31519 * 119.99449 * 179.97438 * 13 11 9 15 15 Si 1.86794 * 120.00134 * 359.97438 * 13 11 9 16 16 H 1.48503 * 109.47287 * 89.99958 * 15 13 11 17 17 H 1.48504 * 109.46876 * 210.00012 * 15 13 11 18 18 H 1.48507 * 109.47206 * 329.99761 * 15 13 11 19 19 C 1.47075 * 136.05455 * 180.02562 * 7 5 4 20 20 C 1.36763 * 106.11655 * 0.36174 * 4 3 2 21 21 C 1.50703 * 125.80214 * 179.90173 * 20 4 3 22 22 N 1.34655 * 108.39820 * 359.63845 * 20 4 3 23 23 C 1.46495 * 124.85282 * 180.22156 * 22 20 4 24 24 H 1.09005 * 109.46796 * 270.02604 * 1 2 3 25 25 H 1.08997 * 109.47086 * 30.01744 * 1 2 3 26 26 H 1.09000 * 109.47224 * 150.02237 * 1 2 3 27 27 H 1.08004 * 126.83639 * 359.97438 * 3 2 1 28 28 H 1.09000 * 113.46799 * 267.69961 * 8 7 5 29 29 H 1.09007 * 113.46367 * 38.13134 * 8 7 5 30 30 H 0.96704 * 114.00195 * 273.58753 * 10 9 8 31 31 H 0.96999 * 119.99588 * 180.02562 * 14 13 11 32 32 H 1.09001 * 113.46360 * 321.86287 * 19 7 5 33 33 H 1.08990 * 113.46826 * 92.24600 * 19 7 5 34 34 H 1.09002 * 109.47152 * 269.71596 * 21 20 4 35 35 H 1.09001 * 109.46980 * 149.71697 * 21 20 4 36 36 H 1.09004 * 109.47113 * 29.71678 * 21 20 4 37 37 H 1.08996 * 109.47448 * 90.00214 * 23 22 20 38 38 H 1.09007 * 109.47143 * 209.99528 * 23 22 20 39 39 H 1.09000 * 109.47290 * 329.99736 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0058 5 6 4.8978 1.4301 0.0130 6 8 5.9892 0.8935 0.0146 7 7 4.8080 2.7749 0.0176 8 6 3.7193 3.7636 0.0110 9 6 4.6743 4.7358 0.7229 10 8 4.6761 4.6245 2.1475 11 6 4.5845 6.1594 0.2367 12 1 5.2497 6.5080 -0.5394 13 6 3.6530 7.0169 0.7829 14 7 3.5750 8.2594 0.3589 15 14 2.5020 6.4137 2.1247 16 1 3.1260 6.6439 3.4525 17 1 1.2180 7.1557 2.0458 18 1 2.2469 4.9621 1.9426 19 6 5.7558 3.8995 0.0245 20 6 3.5998 -0.7551 0.0005 21 6 4.7722 -1.7020 0.0015 22 7 2.3008 -1.1098 0.0003 23 6 1.8099 -2.4901 0.0000 24 1 -0.3633 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.9629 2.1234 -0.0004 28 1 3.4347 4.0892 -0.9895 29 1 2.8632 3.4706 0.6189 30 1 3.9937 5.1525 2.5842 31 1 2.9200 8.8627 0.7434 32 1 6.6350 3.7222 0.6439 33 1 6.0085 4.2602 -0.9725 34 1 5.0555 -1.9305 -1.0260 35 1 4.4953 -2.6225 0.5153 36 1 5.6137 -1.2378 0.5157 37 1 1.6880 -2.8326 1.0275 38 1 0.8496 -2.5341 -0.5140 39 1 2.5267 -3.1306 -0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334240688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:18 Heat of formation + Delta-G solvation = -5.657963 kcal Electronic energy + Delta-G solvation = -22121.741727 eV Core-core repulsion = 18838.452127 eV Total energy + Delta-G solvation = -3283.289600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.46315 -41.21837 -39.01991 -36.33836 -34.55559 -33.87189 -33.57356 -30.85341 -29.97751 -28.18636 -27.09260 -26.59040 -25.53364 -22.89384 -21.62414 -20.63032 -19.55260 -19.05849 -18.16630 -17.90087 -16.89974 -16.81426 -16.43666 -16.16501 -15.60378 -15.25606 -14.93928 -14.80116 -14.40337 -14.18248 -14.13904 -13.95594 -13.79267 -13.76197 -13.54113 -13.19554 -12.99872 -12.85601 -12.58525 -12.55036 -12.39041 -12.35682 -11.91860 -11.41478 -11.07661 -10.81655 -10.42988 -9.77469 -9.46536 -8.95074 -8.43352 -6.54827 0.70552 1.24407 1.28721 1.38589 1.39124 1.76690 2.15236 2.16776 2.52370 2.75657 3.21942 3.69760 3.80361 3.85343 3.88408 4.10095 4.19337 4.38479 4.40190 4.43141 4.48981 4.61620 4.63437 4.66861 4.70085 4.78167 4.79853 4.82009 4.90942 4.97401 5.08180 5.12949 5.26381 5.34202 5.78205 6.02457 6.10301 6.36688 6.52045 6.66554 6.86693 7.12381 7.26840 8.72120 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.005501 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.224331 B = 5088.892512 C = 5958.664491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 C -0.198 4.198 4 C -0.266 4.266 5 C 0.604 3.396 6 O -0.598 6.598 7 N -0.636 5.636 8 C 0.080 3.920 9 C 0.185 3.815 10 O -0.558 6.558 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.032 3.968 14 N -0.921 5.921 15 Si 0.916 3.084 16 H -0.257 1.257 17 H -0.276 1.276 18 H -0.238 1.238 19 C 0.120 3.880 20 C 0.099 3.901 21 C -0.085 4.085 22 N -0.436 5.436 23 C 0.057 3.943 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.355 0.645 31 H 0.275 0.725 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.586 -21.291 -0.225 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.221 4.221 4 C -0.276 4.276 5 C 0.399 3.601 6 O -0.482 6.482 7 N -0.368 5.368 8 C -0.043 4.043 9 C 0.144 3.856 10 O -0.370 6.370 11 C -0.578 4.578 12 H 0.079 0.921 13 C -0.169 4.169 14 N -0.558 5.558 15 Si 0.741 3.259 16 H -0.183 1.183 17 H -0.202 1.202 18 H -0.162 1.162 19 C -0.002 4.002 20 C -0.020 4.020 21 C -0.142 4.142 22 N -0.113 5.113 23 C -0.083 4.083 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.158 0.842 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.208 0.792 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.782 -22.352 -0.341 24.401 hybrid contribution -0.459 1.133 0.525 1.330 sum -10.241 -21.219 0.184 23.562 Atomic orbital electron populations 1.20445 0.84694 1.04674 1.03787 1.20736 0.95201 0.84841 1.08395 1.22174 0.90849 0.98817 1.10254 1.20095 0.92658 0.93296 1.21543 1.17384 0.88419 0.79417 0.74854 1.90624 1.30304 1.71821 1.55468 1.49388 1.12310 1.03165 1.71940 1.24285 0.92569 0.85613 1.01811 1.20333 0.94162 0.92681 0.78440 1.86474 1.58797 1.71408 1.20335 1.21243 1.19937 0.93960 1.22687 0.92114 1.25753 0.98067 0.94623 0.98499 1.69982 1.36254 1.06037 1.43510 0.86363 0.79248 0.80254 0.80065 1.18252 1.20209 1.16199 1.23106 0.94328 0.82398 1.00407 1.20463 0.86347 0.93312 1.01840 1.20507 0.93051 0.96917 1.03750 1.43720 1.03983 1.08134 1.55416 1.22472 1.02922 0.77812 1.05081 0.89920 0.89673 0.89184 0.84186 0.88285 0.90505 0.79242 0.91567 0.91818 0.87980 0.89840 0.88570 0.90997 0.89184 0.87248 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.06 71.24 0.72 -0.43 16 2 C 0.02 0.41 6.85 40.98 0.28 0.69 16 3 C -0.20 -6.40 10.01 23.62 0.24 -6.17 16 4 C -0.27 -9.91 6.29 -19.04 -0.12 -10.03 16 5 C 0.60 26.85 8.06 86.62 0.70 27.55 16 6 O -0.60 -28.70 15.58 -4.11 -0.06 -28.76 16 7 N -0.64 -28.33 3.69 -862.24 -3.18 -31.51 16 8 C 0.08 3.42 6.07 83.27 0.51 3.93 16 9 C 0.18 8.87 1.10 -11.11 -0.01 8.85 16 10 O -0.56 -27.37 13.33 -148.98 -1.99 -29.36 16 11 C -0.54 -29.21 9.28 25.60 0.24 -28.97 16 12 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 13 C 0.03 1.72 5.47 84.65 0.46 2.18 16 14 N -0.92 -52.99 13.96 21.45 0.30 -52.69 16 15 Si 0.92 39.23 24.42 68.60 1.68 40.91 16 16 H -0.26 -10.57 7.06 99.48 0.70 -9.87 16 17 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 18 H -0.24 -9.43 5.50 99.48 0.55 -8.89 16 19 C 0.12 5.47 8.02 83.18 0.67 6.14 16 20 C 0.10 2.89 6.89 41.78 0.29 3.18 16 21 C -0.09 -2.05 9.27 71.24 0.66 -1.39 16 22 N -0.44 -9.60 3.09 -518.64 -1.60 -11.20 16 23 C 0.06 0.57 10.40 127.77 1.33 1.90 16 24 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 0.81 6.94 -2.39 -0.02 0.79 16 27 H 0.14 4.59 5.48 -2.91 -0.02 4.57 16 28 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 29 H 0.08 3.10 5.13 -2.38 -0.01 3.09 16 30 H 0.35 16.15 3.16 -74.05 -0.23 15.92 16 31 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.10 4.35 8.10 -2.39 -0.02 4.33 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 1.54 7.58 -2.39 -0.02 1.52 16 36 H 0.07 2.22 6.45 -2.38 -0.02 2.21 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.11 0.60 6.90 -2.38 -0.02 0.58 16 39 H 0.10 0.73 7.49 -2.39 -0.02 0.71 16 Total: -1.00 -73.70 313.90 1.77 -71.93 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.68 Total: 33.26 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 5.95 Total: 7.43 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -4.48 Total: -95.40 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -2.05 Total: -58.12 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.68 Total: 40.91 kcal Total: -73.70 1.77 -71.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334240688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.268 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds