Wall clock time and date at job start Tue Mar 31 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35425 * 116.99787 * 2 1 4 4 N 1.32236 * 119.80221 * 0.29695 * 3 2 1 5 5 C 1.31875 * 121.79856 * 180.29062 * 4 3 2 6 6 C 1.50708 * 119.40736 * 179.67577 * 5 4 3 7 7 C 1.38355 * 121.18783 * 359.69160 * 5 4 3 8 8 C 1.38337 * 119.45688 * 0.02562 * 7 5 4 9 9 C 1.39979 * 118.34893 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.59625 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99920 * 179.72843 * 10 9 8 12 12 N 1.34777 * 120.00028 * 359.97438 * 10 9 8 13 13 C 1.46506 * 119.99880 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46972 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46861 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99570 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47358 * 59.99825 * 20 18 16 22 22 H 1.48506 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 299.99642 * 20 18 16 24 24 H 1.08993 * 109.47323 * 299.99764 * 1 2 3 25 25 H 1.08998 * 109.47076 * 60.00076 * 1 2 3 26 26 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46853 * 270.01998 * 6 5 4 28 28 H 1.09001 * 109.46982 * 30.01656 * 6 5 4 29 29 H 1.09003 * 109.47098 * 150.01940 * 6 5 4 30 30 H 1.08005 * 120.27514 * 179.97438 * 7 5 4 31 31 H 1.08002 * 120.82630 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 33 33 H 1.08996 * 109.47564 * 300.00632 * 13 12 10 34 34 H 1.09000 * 109.46872 * 60.00429 * 13 12 10 35 35 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 36 36 H 1.09004 * 109.46733 * 59.99984 * 14 13 12 37 37 H 1.09000 * 109.47380 * 299.99696 * 15 14 13 38 38 H 1.09000 * 109.47054 * 60.00300 * 15 14 13 39 39 H 0.97002 * 119.99804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0059 5 6 1.8771 3.5084 0.0005 6 6 1.0000 4.7339 0.0003 7 6 3.2526 3.6575 -0.0054 8 6 4.0588 2.5333 -0.0061 9 6 3.4450 1.2752 -0.0002 10 6 4.2570 0.0436 -0.0001 11 8 3.7125 -1.0436 0.0100 12 7 5.6024 0.1234 -0.0063 13 6 6.4088 -1.0997 -0.0056 14 6 7.8939 -0.7315 -0.0126 15 6 8.7360 -2.0089 -0.0126 16 6 10.1986 -1.6462 -0.0189 17 1 10.4976 -0.6084 -0.0230 18 6 11.1552 -2.6393 -0.0205 19 7 10.7910 -3.9030 -0.0160 20 14 12.9682 -2.1897 -0.0276 21 1 13.2844 -1.3890 1.1824 22 1 13.7857 -3.4295 -0.0277 23 1 13.2760 -1.3933 -1.2427 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7844 5.0262 -1.0274 28 1 0.0668 4.5129 0.5185 29 1 1.5143 5.5489 0.5097 30 1 3.6934 4.6435 -0.0102 31 1 5.1349 2.6240 -0.0111 32 1 6.0368 0.9907 -0.0103 33 1 6.1837 -1.6830 0.8873 34 1 6.1760 -1.6889 -0.8926 35 1 8.1193 -0.1481 -0.9053 36 1 8.1263 -0.1425 0.8746 37 1 8.5106 -2.5926 0.8799 38 1 8.5033 -2.5975 -0.9001 39 1 11.4640 -4.6016 -0.0176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346727780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:35 Heat of formation + Delta-G solvation = -54.142797 kcal Electronic energy + Delta-G solvation = -20627.195009 eV Core-core repulsion = 17341.802948 eV Total energy + Delta-G solvation = -3285.392060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.11211 -39.00141 -38.22190 -35.34927 -33.70101 -33.04269 -32.03681 -31.07074 -28.75215 -27.43895 -26.33085 -23.73210 -23.13081 -22.65114 -20.72054 -20.21197 -18.45957 -17.50530 -17.06948 -16.30121 -16.29323 -15.30320 -15.15914 -14.82103 -14.51713 -14.45801 -14.40162 -14.14339 -13.75958 -13.14866 -12.87699 -12.68305 -12.54953 -12.25935 -11.91544 -11.81593 -11.68845 -11.26611 -10.88218 -10.72255 -10.62303 -10.22582 -10.14699 -9.85276 -9.77716 -9.34489 -9.11821 -8.82928 -8.58115 -8.36417 -6.01142 -4.04370 0.45980 0.98923 2.87843 2.89328 3.32221 3.32317 3.37146 3.39344 3.67462 3.85613 4.33589 4.44606 4.59567 4.73195 4.87571 5.08291 5.13193 5.14722 5.15915 5.17911 5.34476 5.45346 5.55295 5.59210 5.72528 5.77959 5.80145 6.08434 6.18272 6.50258 6.61352 6.84461 7.01263 7.04583 7.49996 7.64131 7.74299 7.77239 7.97619 8.37843 8.44384 9.02126 9.59641 11.10153 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031909 B = 0.002881 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.298411 B = 9715.915880 C =10556.848396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.376 3.624 4 N -0.547 5.547 5 C 0.189 3.811 6 C -0.108 4.108 7 C -0.220 4.220 8 C -0.006 4.006 9 C -0.212 4.212 10 C 0.557 3.443 11 O -0.520 6.520 12 N -0.724 5.724 13 C 0.118 3.882 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.934 17.859 -0.026 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.172 6.172 3 C 0.195 3.805 4 N -0.273 5.273 5 C 0.051 3.949 6 C -0.165 4.165 7 C -0.241 4.241 8 C -0.032 4.032 9 C -0.218 4.218 10 C 0.343 3.657 11 O -0.396 6.396 12 N -0.376 5.376 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.164 0.836 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.052 16.463 -0.010 26.726 hybrid contribution 1.957 0.775 -0.023 2.105 sum -19.096 17.239 -0.033 25.726 Atomic orbital electron populations 1.22948 0.77660 1.03313 1.02123 1.86570 1.22214 1.22870 1.85545 1.19819 0.88147 0.84905 0.87586 1.67264 1.40346 0.98212 1.21470 1.21164 0.92188 0.91960 0.89600 1.20816 0.99365 0.92778 1.03531 1.21727 0.93814 0.99971 1.08554 1.21674 1.00760 0.90460 0.90265 1.20123 0.91659 0.95267 1.14744 1.17771 0.82266 0.88148 0.77548 1.90831 1.71677 1.28356 1.48778 1.46087 1.05563 1.10739 1.75173 1.21660 0.91223 0.85382 1.02165 1.21894 0.91253 1.01893 1.00841 1.19024 0.93584 0.91059 0.97702 1.21169 0.91222 0.92687 1.51085 0.92701 1.25032 0.99138 0.95013 0.95280 1.69957 1.33787 0.99086 1.50440 0.86640 0.84963 0.77698 0.78570 1.20252 1.21271 1.20249 0.92329 0.92354 0.88338 0.89812 0.90228 0.90086 0.83897 0.83557 0.77111 0.91620 0.91619 0.92726 0.92720 0.96238 0.96237 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.38 101.05 1.05 1.41 16 2 O -0.27 -4.02 8.58 -39.74 -0.34 -4.36 16 3 C 0.38 5.30 7.51 -16.61 -0.12 5.17 16 4 N -0.55 -6.52 9.11 -9.21 -0.08 -6.61 16 5 C 0.19 1.74 6.78 -82.53 -0.56 1.18 16 6 C -0.11 -0.59 10.16 36.01 0.37 -0.22 16 7 C -0.22 -1.81 9.71 -39.50 -0.38 -2.19 16 8 C -0.01 -0.06 9.64 -38.89 -0.37 -0.43 16 9 C -0.21 -2.89 5.90 -104.69 -0.62 -3.51 16 10 C 0.56 9.24 7.77 -12.47 -0.10 9.14 16 11 O -0.52 -10.66 15.19 -16.49 -0.25 -10.91 16 12 N -0.72 -10.89 5.51 -61.35 -0.34 -11.23 16 13 C 0.12 2.13 5.67 -4.04 -0.02 2.11 16 14 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 25 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 31 H 0.15 1.04 6.52 -52.49 -0.34 0.70 16 32 H 0.39 4.63 6.57 -40.82 -0.27 4.36 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -34.82 335.63 -7.34 -42.15 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -5.64 Total: -1.59 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.46 Total: -2.79 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.31 Total: -44.03 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.59 Total: -15.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.82 -7.34 -42.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346727780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.991 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds