Wall clock time and date at job start Tue Mar 31 2020 00:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35425 * 116.99787 * 2 1 4 4 N 1.32236 * 119.80221 * 0.29695 * 3 2 1 5 5 C 1.31875 * 121.79856 * 180.29062 * 4 3 2 6 6 C 1.50708 * 119.40736 * 179.67577 * 5 4 3 7 7 C 1.38355 * 121.18783 * 359.69160 * 5 4 3 8 8 C 1.38337 * 119.45688 * 0.02562 * 7 5 4 9 9 C 1.39979 * 118.34893 * 359.97438 * 8 7 5 10 10 C 1.47526 * 120.59625 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99920 * 179.72843 * 10 9 8 12 12 N 1.34777 * 120.00028 * 359.97438 * 10 9 8 13 13 C 1.46506 * 119.99880 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47042 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46972 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.46861 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00200 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99570 * 359.97438 * 18 16 15 20 20 Si 1.86790 * 120.00138 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47358 * 59.99825 * 20 18 16 22 22 H 1.48506 * 109.47142 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47328 * 299.99642 * 20 18 16 24 24 H 1.08993 * 109.47323 * 299.99764 * 1 2 3 25 25 H 1.08998 * 109.47076 * 60.00076 * 1 2 3 26 26 H 1.08998 * 109.46776 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46853 * 270.01998 * 6 5 4 28 28 H 1.09001 * 109.46982 * 30.01656 * 6 5 4 29 29 H 1.09003 * 109.47098 * 150.01940 * 6 5 4 30 30 H 1.08005 * 120.27514 * 179.97438 * 7 5 4 31 31 H 1.08002 * 120.82630 * 179.97438 * 8 7 5 32 32 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 33 33 H 1.08996 * 109.47564 * 300.00632 * 13 12 10 34 34 H 1.09000 * 109.46872 * 60.00429 * 13 12 10 35 35 H 1.08996 * 109.47407 * 300.00667 * 14 13 12 36 36 H 1.09004 * 109.46733 * 59.99984 * 14 13 12 37 37 H 1.09000 * 109.47380 * 299.99696 * 15 14 13 38 38 H 1.09000 * 109.47054 * 60.00300 * 15 14 13 39 39 H 0.97002 * 119.99804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0059 5 6 1.8771 3.5084 0.0005 6 6 1.0000 4.7339 0.0003 7 6 3.2526 3.6575 -0.0054 8 6 4.0588 2.5333 -0.0061 9 6 3.4450 1.2752 -0.0002 10 6 4.2570 0.0436 -0.0001 11 8 3.7125 -1.0436 0.0100 12 7 5.6024 0.1234 -0.0063 13 6 6.4088 -1.0997 -0.0056 14 6 7.8939 -0.7315 -0.0126 15 6 8.7360 -2.0089 -0.0126 16 6 10.1986 -1.6462 -0.0189 17 1 10.4976 -0.6084 -0.0230 18 6 11.1552 -2.6393 -0.0205 19 7 10.7910 -3.9030 -0.0160 20 14 12.9682 -2.1897 -0.0276 21 1 13.2844 -1.3890 1.1824 22 1 13.7857 -3.4295 -0.0277 23 1 13.2760 -1.3933 -1.2427 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7844 5.0262 -1.0274 28 1 0.0668 4.5129 0.5185 29 1 1.5143 5.5489 0.5097 30 1 3.6934 4.6435 -0.0102 31 1 5.1349 2.6240 -0.0111 32 1 6.0368 0.9907 -0.0103 33 1 6.1837 -1.6830 0.8873 34 1 6.1760 -1.6889 -0.8926 35 1 8.1193 -0.1481 -0.9053 36 1 8.1263 -0.1425 0.8746 37 1 8.5106 -2.5926 0.8799 38 1 8.5033 -2.5975 -0.9001 39 1 11.4640 -4.6016 -0.0176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346727780.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:35 Heat of formation + Delta-G solvation = -78.901612 kcal Electronic energy + Delta-G solvation = -20628.268631 eV Core-core repulsion = 17341.802948 eV Total energy + Delta-G solvation = -3286.465683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01331 -40.25386 -39.10050 -36.94734 -35.26538 -34.30823 -32.86077 -32.70677 -29.55153 -28.78504 -27.61325 -25.22557 -23.92098 -23.86687 -22.31136 -21.56975 -19.39847 -18.72837 -18.33845 -17.93457 -17.24081 -16.67243 -16.58855 -16.35286 -15.59723 -15.42835 -15.36320 -15.13948 -14.94942 -14.34394 -14.00314 -13.75156 -13.58295 -13.54036 -13.25694 -13.02646 -12.70577 -12.70489 -12.54431 -12.40893 -12.04866 -11.66409 -11.59701 -11.26913 -11.15256 -10.98607 -10.64694 -10.53994 -10.15432 -9.48367 -8.18486 -6.30258 -0.39752 0.21246 1.42480 1.45796 1.53574 1.81177 2.02748 2.11690 2.43455 2.73029 3.10941 3.15251 3.67629 3.71589 3.88716 4.14837 4.21511 4.22651 4.35338 4.36553 4.36755 4.54801 4.66229 4.71181 4.82147 4.92991 4.94428 4.96161 5.02090 5.15728 5.17928 5.40382 5.47837 5.52937 5.71291 5.84842 6.18138 6.22722 6.51914 6.73589 6.87350 7.21344 7.39380 8.93616 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031909 B = 0.002881 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.298411 B = 9715.915880 C =10556.848396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.354 3.646 4 N -0.559 5.559 5 C 0.183 3.817 6 C -0.105 4.105 7 C -0.207 4.207 8 C 0.001 3.999 9 C -0.242 4.242 10 C 0.556 3.444 11 O -0.571 6.571 12 N -0.709 5.709 13 C 0.131 3.869 14 C -0.100 4.100 15 C 0.023 3.977 16 C -0.541 4.541 17 H 0.069 0.931 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.071 0.929 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.220 21.889 -0.050 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.209 6.209 3 C 0.174 3.826 4 N -0.285 5.285 5 C 0.046 3.954 6 C -0.162 4.162 7 C -0.227 4.227 8 C -0.024 4.024 9 C -0.248 4.248 10 C 0.344 3.656 11 O -0.451 6.451 12 N -0.362 5.362 13 C 0.007 3.993 14 C -0.138 4.138 15 C -0.015 4.015 16 C -0.579 4.579 17 H 0.087 0.913 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.203 0.797 31 H 0.193 0.807 32 H 0.252 0.748 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.337 20.557 -0.034 28.917 hybrid contribution 1.634 -0.383 -0.017 1.678 sum -18.703 20.174 -0.051 27.510 Atomic orbital electron populations 1.23106 0.76048 1.04370 1.02621 1.86517 1.24149 1.24275 1.85929 1.20058 0.88599 0.85283 0.88668 1.67343 1.40462 0.98608 1.22107 1.22001 0.93698 0.92098 0.87625 1.20960 0.98875 0.91655 1.04720 1.22206 0.93159 1.01217 1.06117 1.22041 1.02361 0.89249 0.88770 1.19998 0.91362 0.95270 1.18219 1.18276 0.82441 0.88714 0.76209 1.90795 1.72591 1.30539 1.51185 1.45787 1.05117 1.10556 1.74765 1.21257 0.90903 0.86417 1.00686 1.21600 0.90786 0.99072 1.02369 1.18943 0.94289 0.93218 0.95016 1.21665 0.92315 0.93429 1.50498 0.91297 1.26053 1.04572 0.94824 0.94782 1.70116 1.35507 1.00389 1.51680 0.85450 0.78443 0.77513 0.79328 1.18930 1.21300 1.18915 0.91776 0.91777 0.87094 0.88411 0.90555 0.87242 0.79655 0.80747 0.74841 0.93287 0.93275 0.91059 0.91057 0.99059 0.99050 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.38 113.37 1.18 1.89 16 2 O -0.30 -9.60 8.58 -66.39 -0.57 -10.17 16 3 C 0.35 10.09 7.51 85.13 0.64 10.73 16 4 N -0.56 -12.79 9.11 -296.05 -2.70 -15.49 16 5 C 0.18 2.85 6.78 42.58 0.29 3.14 16 6 C -0.11 -0.76 10.16 71.24 0.72 -0.03 16 7 C -0.21 -2.55 9.71 22.32 0.22 -2.33 16 8 C 0.00 0.02 9.64 22.72 0.22 0.24 16 9 C -0.24 -6.53 5.90 -19.91 -0.12 -6.65 16 10 C 0.56 18.82 7.77 86.69 0.67 19.50 16 11 O -0.57 -24.74 15.19 16.80 0.26 -24.49 16 12 N -0.71 -20.99 5.51 -466.26 -2.57 -23.56 16 13 C 0.13 4.83 5.67 86.38 0.49 5.32 16 14 C -0.10 -3.87 5.27 30.59 0.16 -3.71 16 15 C 0.02 1.21 4.97 29.85 0.15 1.36 16 16 C -0.54 -30.17 9.11 25.60 0.23 -29.94 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 20 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 25 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.20 8.07 -2.39 -0.02 0.18 16 30 H 0.19 0.71 8.06 -2.91 -0.02 0.68 16 31 H 0.18 1.77 6.52 -2.91 -0.02 1.75 16 32 H 0.41 8.79 6.57 -92.71 -0.61 8.18 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 37 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.41 335.63 2.49 -76.92 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.44 Total: 8.75 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.32 Total: -0.29 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.98 Total: -96.46 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.31 Total: -34.66 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.41 2.49 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346727780.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.980 kcal (2) G-P(sol) polarization free energy of solvation -79.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds