Wall clock time and date at job start Mon Mar 30 2020 23:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99877 * 2 1 4 4 C 1.38611 * 120.02218 * 0.02562 * 3 2 1 5 5 C 1.38786 * 119.87586 * 179.97438 * 4 3 2 6 6 N 1.39670 * 120.04749 * 180.02562 * 5 4 3 7 7 C 1.46499 * 119.99908 * 0.02562 * 6 5 4 8 8 C 1.50701 * 109.46992 * 179.97438 * 7 6 5 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47117 * 59.99412 * 15 13 11 17 17 H 1.48498 * 109.47600 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46756 * 300.00019 * 15 13 11 19 19 C 1.38973 * 119.90756 * 0.27708 * 5 4 3 20 20 C 1.50697 * 119.98617 * 179.70733 * 19 5 4 21 21 C 1.38122 * 120.03257 * 359.44807 * 19 5 4 22 22 C 1.38216 * 120.12687 * 0.55321 * 21 19 5 23 23 C 1.50702 * 119.95500 * 179.69881 * 22 21 19 24 24 H 1.08997 * 109.47438 * 59.99412 * 1 2 3 25 25 H 1.08997 * 109.47256 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46610 * 299.99820 * 1 2 3 27 27 H 1.08007 * 120.05783 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99671 * 179.97438 * 6 5 4 29 29 H 1.09002 * 109.47391 * 59.99812 * 7 6 5 30 30 H 1.09001 * 109.46813 * 299.99868 * 7 6 5 31 31 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 32 32 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 33 33 H 1.08996 * 109.47766 * 89.99522 * 20 19 5 34 34 H 1.08997 * 109.46948 * 210.00535 * 20 19 5 35 35 H 1.09009 * 109.46751 * 329.99629 * 20 19 5 36 36 H 1.07999 * 119.93715 * 180.25489 * 21 19 5 37 37 H 1.08997 * 109.47391 * 270.02521 * 23 22 21 38 38 H 1.09002 * 109.46429 * 30.02182 * 23 22 21 39 39 H 1.09002 * 109.47388 * 150.01989 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3736 0.0005 5 6 1.9247 3.6086 0.0011 6 7 1.1679 4.7826 0.0022 7 6 -0.2953 4.7108 0.0033 8 6 -0.8666 6.1053 0.0050 9 8 -0.1245 7.0647 0.0047 10 7 -2.2022 6.2864 0.0057 11 6 -2.7219 7.5550 0.0067 12 1 -2.0611 8.4093 0.0073 13 6 -4.0988 7.7417 0.0079 14 7 -4.9028 6.7022 0.0077 15 14 -4.8070 9.4702 0.0086 16 1 -4.3479 10.1937 -1.2043 17 1 -6.2902 9.3976 0.0093 18 1 -4.3457 10.1937 1.2206 19 6 3.3128 3.6756 -0.0048 20 6 4.0021 5.0157 -0.0108 21 6 4.0609 2.5146 0.0004 22 6 3.4318 1.2839 -0.0001 23 6 4.2519 0.0196 -0.0013 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3186 0.0014 28 1 1.6112 5.6453 0.0029 29 1 -0.6324 4.1794 0.8933 30 1 -0.6337 4.1801 -0.8867 31 1 -2.7956 5.5191 0.0055 32 1 -5.8640 6.8326 0.0082 33 1 4.1725 5.3414 1.0153 34 1 4.9576 4.9304 -0.5285 35 1 3.3748 5.7446 -0.5240 36 1 5.1396 2.5685 0.0001 37 1 4.4496 -0.2844 -1.0292 38 1 5.1963 0.1988 0.5126 39 1 3.7031 -0.7700 0.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359671756.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:02 Heat of formation + Delta-G solvation = -59.337733 kcal Electronic energy + Delta-G solvation = -21089.464121 eV Core-core repulsion = 17803.846791 eV Total energy + Delta-G solvation = -3285.617330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26194 -38.62516 -37.75616 -35.23219 -34.04990 -32.32000 -31.40725 -30.88295 -27.92481 -27.70947 -26.48693 -25.06087 -24.00165 -21.69099 -20.39205 -19.46938 -18.30717 -18.00731 -16.49942 -16.04495 -15.73374 -15.14186 -14.82101 -14.79917 -14.60477 -14.38461 -13.84189 -13.74487 -13.43999 -13.27254 -13.06030 -12.48563 -12.44706 -12.15120 -11.96589 -11.76352 -11.73644 -11.65451 -11.16584 -11.04294 -10.88531 -10.82285 -10.53906 -10.34651 -9.67029 -9.47282 -8.66806 -8.18745 -8.14406 -7.00512 -6.55891 -3.97841 1.58737 1.77753 3.10799 3.18682 3.22215 3.35183 3.64298 3.68988 3.94743 4.09690 4.81067 4.91108 5.08119 5.12086 5.12746 5.17790 5.18843 5.37826 5.46014 5.57974 5.61034 5.67930 5.75618 5.81117 5.82093 5.85124 5.87470 6.02568 6.06016 6.29273 6.34405 6.61868 6.70236 6.91687 7.33931 7.41919 7.63152 7.88905 8.08364 8.41174 9.00701 9.34403 9.82802 10.61030 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026519 B = 0.003609 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.578873 B = 7756.979374 C = 8781.503222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.168 3.832 4 C -0.286 4.286 5 C 0.260 3.740 6 N -0.720 5.720 7 C 0.112 3.888 8 C 0.429 3.571 9 O -0.594 6.594 10 N -0.550 5.550 11 C -0.306 4.306 12 H 0.105 0.895 13 C 0.026 3.974 14 N -0.896 5.896 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.197 4.197 20 C -0.101 4.101 21 C -0.036 4.036 22 C -0.185 4.185 23 C -0.091 4.091 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.412 0.588 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.492 -12.526 -0.005 16.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.122 3.878 4 C -0.310 4.310 5 C 0.153 3.847 6 N -0.352 5.352 7 C -0.017 4.017 8 C 0.214 3.786 9 O -0.480 6.480 10 N -0.185 5.185 11 C -0.435 4.435 12 H 0.122 0.878 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.760 3.240 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.202 4.202 20 C -0.158 4.158 21 C -0.055 4.055 22 C -0.188 4.188 23 C -0.147 4.147 24 H 0.074 0.926 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.253 0.747 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.228 0.772 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.589 -12.068 -0.006 16.731 hybrid contribution -1.147 0.820 -0.003 1.410 sum 10.442 -11.248 -0.009 15.348 Atomic orbital electron populations 1.23031 0.78618 1.03500 1.01673 1.86020 1.21156 1.27189 1.88622 1.18484 0.91397 0.83400 0.94552 1.20614 0.99848 0.90868 1.19634 1.17369 0.89953 0.86154 0.91220 1.44634 1.04385 1.06468 1.79677 1.20943 0.81556 0.97380 1.01785 1.19726 0.83622 0.89650 0.85564 1.90504 1.58624 1.41903 1.56999 1.41785 1.04456 1.09379 1.62871 1.19686 0.90766 0.84726 1.48329 0.87753 1.25310 0.95909 0.99680 0.96731 1.69600 1.04556 1.30098 1.49411 0.85871 0.77490 0.81415 0.79211 1.19749 1.20816 1.19744 1.19236 0.91263 0.95993 1.13695 1.20529 0.99805 0.93742 1.01755 1.20402 0.98777 0.90098 0.96251 1.18865 0.90311 0.95734 1.13892 1.20411 0.98281 0.94730 1.01323 0.92593 0.88565 0.92613 0.85442 0.74711 0.90782 0.90790 0.77172 0.91538 0.91956 0.91909 0.92016 0.85843 0.92472 0.92501 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.10 9.53 -19.42 -0.19 -4.28 16 3 C 0.17 2.38 6.66 -39.24 -0.26 2.12 16 4 C -0.29 -4.23 8.30 -39.24 -0.33 -4.55 16 5 C 0.26 4.09 6.63 -83.81 -0.56 3.54 16 6 N -0.72 -12.35 5.60 -59.82 -0.34 -12.69 16 7 C 0.11 1.97 5.39 -5.19 -0.03 1.95 16 8 C 0.43 9.81 7.85 -10.98 -0.09 9.72 16 9 O -0.59 -15.48 15.24 5.55 0.08 -15.40 16 10 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 11 C -0.31 -8.27 9.68 -14.94 -0.14 -8.42 16 12 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 13 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 14 N -0.90 -23.58 13.05 55.50 0.72 -22.86 16 15 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 C -0.20 -2.80 5.90 -104.39 -0.62 -3.42 16 20 C -0.10 -1.26 9.57 36.00 0.34 -0.92 16 21 C -0.04 -0.47 9.34 -39.63 -0.37 -0.84 16 22 C -0.19 -2.46 5.90 -104.43 -0.62 -3.08 16 23 C -0.09 -0.97 9.79 36.01 0.35 -0.62 16 24 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 25 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 27 H 0.13 1.75 4.97 -52.48 -0.26 1.49 16 28 H 0.41 7.47 5.43 -40.82 -0.22 7.25 16 29 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 30 H 0.07 1.19 7.95 -51.93 -0.41 0.78 16 31 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 32 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.06 0.83 6.55 -51.92 -0.34 0.49 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.06 0.68 7.52 -51.93 -0.39 0.29 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -30.12 327.59 -6.46 -36.59 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.20 Total: 14.47 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.41 Total: -2.67 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.33 Total: -49.06 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.10 Total: -19.68 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.12 -6.46 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359671756.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.751 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds