Wall clock time and date at job start Mon Mar 30 2020 23:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47194 * 64.99925 * 9 8 7 11 11 C 1.34773 * 120.00133 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00016 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99744 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46919 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00187 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99831 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99588 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00128 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47161 * 89.99960 * 19 17 15 21 21 H 1.48499 * 109.46856 * 209.99906 * 19 17 15 22 22 H 1.48497 * 109.46761 * 330.00037 * 19 17 15 23 23 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 27 27 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 29 29 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 30 30 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 31 31 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 32 32 H 1.08994 * 109.47282 * 185.00561 * 9 8 7 33 33 H 1.09005 * 109.47031 * 305.00153 * 9 8 7 34 34 H 0.97000 * 119.99757 * 0.02562 * 10 9 8 35 35 H 0.96994 * 119.99935 * 0.02562 * 13 11 10 36 36 H 1.08993 * 109.47399 * 300.00480 * 14 13 11 37 37 H 1.09004 * 109.46926 * 60.00300 * 14 13 11 38 38 H 0.96997 * 119.99759 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03255 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 7 5.9277 -4.3768 -1.2736 11 6 6.3394 -5.6395 -1.5027 12 8 7.0025 -6.2237 -0.6676 13 7 6.0161 -6.2546 -2.6575 14 6 6.4641 -7.6270 -2.9067 15 6 5.9738 -8.0778 -4.2586 16 1 5.3876 -7.4088 -4.8710 17 6 6.2738 -9.3444 -4.7135 18 7 5.8455 -9.7379 -5.8930 19 14 7.2871 -10.5018 -3.6539 20 1 6.3827 -11.2974 -2.7853 21 1 8.0669 -11.4164 -4.5261 22 1 8.2173 -9.7117 -2.8079 23 6 2.1970 -1.1966 -0.0058 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 0.0098 29 1 5.3552 0.0102 0.0002 30 1 6.0278 -1.7576 -0.8990 31 1 6.0280 -1.7669 0.8810 32 1 7.3644 -3.6512 0.0712 33 1 5.8747 -4.2735 0.8205 34 1 5.3984 -3.9108 -1.9397 35 1 5.4875 -5.7885 -3.3238 36 1 7.5532 -7.6633 -2.8849 37 1 6.0631 -8.2856 -2.1362 38 1 6.0568 -10.6287 -6.2132 39 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362461388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:13 Heat of formation + Delta-G solvation = -51.753707 kcal Electronic energy + Delta-G solvation = -20283.209844 eV Core-core repulsion = 16997.921383 eV Total energy + Delta-G solvation = -3285.288462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46361 -39.28884 -37.97891 -34.84658 -34.05303 -32.79402 -32.32794 -30.88048 -29.29759 -27.53760 -27.14661 -23.56060 -22.79954 -21.99055 -21.00604 -20.32038 -18.33668 -18.08427 -16.62078 -16.43722 -16.30454 -16.02522 -15.40432 -15.03362 -14.55925 -14.34141 -14.00464 -13.92248 -13.54097 -13.43695 -13.16955 -13.02592 -12.46247 -12.38790 -12.27139 -12.10767 -11.82088 -11.78936 -11.18661 -11.03790 -10.94480 -10.73167 -9.93789 -9.59048 -9.42587 -9.07519 -8.87066 -8.72300 -8.44654 -7.98128 -6.17877 -4.19520 1.02830 1.18277 2.87676 3.25067 3.31081 3.38001 3.46047 3.47382 3.83538 4.37184 4.43335 4.50433 4.67627 4.74847 4.76521 4.93149 4.94798 5.03950 5.07951 5.17746 5.21208 5.29163 5.39782 5.52350 5.66226 5.75817 5.79794 6.04199 6.14281 6.30566 6.49888 6.73279 6.77505 7.15248 7.16884 7.27518 7.44101 7.59642 8.31469 8.72252 8.84740 9.23255 9.43810 10.94182 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.002773 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.427015 B =10094.824927 C =10734.254653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.162 4.162 4 C -0.077 4.077 5 C -0.217 4.217 6 C 0.137 3.863 7 O -0.309 6.309 8 C 0.048 3.952 9 C 0.145 3.855 10 N -0.753 5.753 11 C 0.696 3.304 12 O -0.606 6.606 13 N -0.722 5.722 14 C 0.238 3.762 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.894 5.894 19 Si 0.878 3.122 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.396 0.604 35 H 0.393 0.607 36 H 0.023 0.977 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.629 23.829 12.433 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.181 4.181 4 C -0.095 4.095 5 C -0.235 4.235 6 C 0.091 3.909 7 O -0.222 6.222 8 C -0.027 4.027 9 C 0.020 3.980 10 N -0.411 5.411 11 C 0.395 3.605 12 O -0.485 6.485 13 N -0.374 5.374 14 C 0.115 3.885 15 C -0.580 4.580 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.531 5.531 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.172 4.172 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.229 0.771 35 H 0.226 0.774 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.066 22.877 13.060 27.032 hybrid contribution 0.221 -0.039 -0.223 0.316 sum -5.846 22.838 12.836 26.843 Atomic orbital electron populations 1.20826 0.90730 1.03118 1.02591 1.19727 0.96107 0.92267 0.96737 1.20936 0.94177 0.97524 1.05437 1.20919 0.94179 0.97384 0.97060 1.21256 1.00292 0.92276 1.09716 1.19015 0.91796 0.84732 0.95352 1.86168 1.19875 1.27892 1.88291 1.23170 0.78623 0.98535 1.02421 1.21114 0.99574 0.89666 0.87650 1.45030 1.60357 1.14797 1.20928 1.16093 0.80395 0.80736 0.83260 1.90862 1.45111 1.65818 1.46742 1.45385 1.57230 1.17469 1.17346 1.19359 0.95218 0.77210 0.96665 1.21104 1.35644 1.00593 1.00620 0.90303 1.24787 0.95257 0.97675 0.94953 1.69883 1.45342 1.19605 1.18304 0.86803 0.81113 0.81092 0.80608 1.19852 1.20962 1.18429 1.20352 0.91004 0.98770 1.07067 0.90875 0.91298 0.91147 0.86058 0.85863 0.85483 0.91147 0.90371 0.89624 0.90713 0.77052 0.77426 0.95916 0.96357 0.92299 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.05 -0.42 5.88 -104.64 -0.62 -1.04 16 3 C -0.16 -1.32 9.70 -39.56 -0.38 -1.70 16 4 C -0.08 -0.63 10.04 -39.61 -0.40 -1.02 16 5 C -0.22 -1.95 9.04 -39.44 -0.36 -2.31 16 6 C 0.14 1.46 6.69 -39.22 -0.26 1.20 16 7 O -0.31 -3.50 10.08 -19.45 -0.20 -3.70 16 8 C 0.05 0.43 4.87 37.15 0.18 0.61 16 9 C 0.14 1.74 6.06 -4.04 -0.02 1.71 16 10 N -0.75 -11.11 5.51 -65.23 -0.36 -11.47 16 11 C 0.70 14.05 8.57 -86.92 -0.74 13.31 16 12 O -0.61 -14.56 16.34 5.29 0.09 -14.47 16 13 N -0.72 -15.32 5.55 -66.41 -0.37 -15.69 16 14 C 0.24 6.05 4.50 -5.19 -0.02 6.03 16 15 C -0.54 -15.15 9.83 -34.44 -0.34 -15.49 16 16 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 19 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 23 C -0.15 -1.58 9.64 -39.43 -0.38 -1.96 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 28 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 29 H 0.13 0.91 6.30 -52.48 -0.33 0.58 16 30 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 31 H 0.08 0.54 7.66 -51.92 -0.40 0.14 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.98 8.49 -40.82 -0.35 4.63 16 35 H 0.39 7.35 8.33 -40.82 -0.34 7.01 16 36 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 37 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -34.28 334.09 -8.32 -42.59 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.53 Total: 5.60 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.08 Total: 1.07 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.05 Total: -53.25 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.11 Total: -18.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.28 -8.32 -42.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362461388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.159 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds