Wall clock time and date at job start Mon Mar 30 2020 23:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47194 * 64.99925 * 9 8 7 11 11 C 1.34773 * 120.00133 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00016 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99985 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99744 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46919 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00187 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99831 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99588 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00128 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47161 * 89.99960 * 19 17 15 21 21 H 1.48499 * 109.46856 * 209.99906 * 19 17 15 22 22 H 1.48497 * 109.46761 * 330.00037 * 19 17 15 23 23 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 24 24 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 25 25 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 26 26 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 27 27 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 28 28 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 29 29 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 30 30 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 31 31 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 32 32 H 1.08994 * 109.47282 * 185.00561 * 9 8 7 33 33 H 1.09005 * 109.47031 * 305.00153 * 9 8 7 34 34 H 0.97000 * 119.99757 * 0.02562 * 10 9 8 35 35 H 0.96994 * 119.99935 * 0.02562 * 13 11 10 36 36 H 1.08993 * 109.47399 * 300.00480 * 14 13 11 37 37 H 1.09004 * 109.46926 * 60.00300 * 14 13 11 38 38 H 0.96997 * 119.99759 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03255 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 7 5.9277 -4.3768 -1.2736 11 6 6.3394 -5.6395 -1.5027 12 8 7.0025 -6.2237 -0.6676 13 7 6.0161 -6.2546 -2.6575 14 6 6.4641 -7.6270 -2.9067 15 6 5.9738 -8.0778 -4.2586 16 1 5.3876 -7.4088 -4.8710 17 6 6.2738 -9.3444 -4.7135 18 7 5.8455 -9.7379 -5.8930 19 14 7.2871 -10.5018 -3.6539 20 1 6.3827 -11.2974 -2.7853 21 1 8.0669 -11.4164 -4.5261 22 1 8.2173 -9.7117 -2.8079 23 6 2.1970 -1.1966 -0.0058 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3634 0.8925 -0.5094 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1381 0.0098 29 1 5.3552 0.0102 0.0002 30 1 6.0278 -1.7576 -0.8990 31 1 6.0280 -1.7669 0.8810 32 1 7.3644 -3.6512 0.0712 33 1 5.8747 -4.2735 0.8205 34 1 5.3984 -3.9108 -1.9397 35 1 5.4875 -5.7885 -3.3238 36 1 7.5532 -7.6633 -2.8849 37 1 6.0631 -8.2856 -2.1362 38 1 6.0568 -10.6287 -6.2132 39 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362461388.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:13 Heat of formation + Delta-G solvation = -76.227027 kcal Electronic energy + Delta-G solvation = -20284.271087 eV Core-core repulsion = 16997.921383 eV Total energy + Delta-G solvation = -3286.349705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25322 -40.76666 -38.73260 -36.37863 -35.70781 -34.40237 -33.38267 -31.81171 -30.43539 -29.14928 -27.81658 -24.75826 -23.67188 -23.45451 -21.97770 -21.72842 -19.98291 -18.83602 -18.34771 -17.72953 -17.09395 -16.83036 -16.70463 -16.48786 -16.14693 -15.32895 -15.19854 -15.01758 -14.69843 -14.49565 -14.34730 -14.21000 -14.06020 -13.69642 -13.10639 -12.96685 -12.93828 -12.70037 -12.62828 -12.39528 -11.91676 -11.85867 -11.69819 -11.64906 -11.30109 -10.91298 -10.33892 -9.72023 -9.66906 -9.12725 -8.39331 -6.46285 0.38612 0.51326 1.34553 1.35993 1.49776 1.84485 2.14992 2.22449 2.29722 2.82274 2.96237 3.47742 3.68400 3.92439 3.99642 4.07701 4.18772 4.31225 4.36338 4.44859 4.56893 4.63565 4.72546 4.82693 4.82996 4.89797 5.03881 5.05983 5.25127 5.25273 5.38610 5.47285 5.51953 5.55366 5.68172 5.89017 5.95999 6.27105 6.46988 6.55680 7.13718 7.24554 7.64852 8.75544 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027732 B = 0.002773 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.427015 B =10094.824927 C =10734.254653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.168 4.168 4 C -0.081 4.081 5 C -0.222 4.222 6 C 0.117 3.883 7 O -0.332 6.332 8 C 0.055 3.945 9 C 0.141 3.859 10 N -0.733 5.733 11 C 0.695 3.305 12 O -0.644 6.644 13 N -0.723 5.723 14 C 0.251 3.749 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.932 5.932 19 Si 0.939 3.061 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.259 1.259 23 C -0.178 4.178 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.404 0.596 36 H 0.012 0.988 37 H 0.008 0.992 38 H 0.273 0.727 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 25.717 13.413 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.241 4.241 6 C 0.072 3.928 7 O -0.246 6.246 8 C -0.020 4.020 9 C 0.017 3.983 10 N -0.390 5.390 11 C 0.394 3.606 12 O -0.527 6.527 13 N -0.376 5.376 14 C 0.127 3.873 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.174 4.174 18 N -0.571 5.571 19 Si 0.763 3.237 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.184 1.184 23 C -0.197 4.197 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.239 0.761 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.082 0.918 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.767 24.834 14.037 29.103 hybrid contribution 0.043 -0.497 -0.533 0.730 sum -5.724 24.337 13.504 28.415 Atomic orbital electron populations 1.20871 0.89325 1.03720 1.03283 1.20033 0.97322 0.92084 0.96211 1.21283 0.94607 0.98089 1.04584 1.21298 0.94419 0.98158 0.95967 1.21505 1.01313 0.91898 1.09340 1.19208 0.91994 0.85080 0.96553 1.86115 1.20894 1.28814 1.88772 1.23189 0.77755 0.96526 1.04547 1.21331 1.00424 0.90993 0.85563 1.44921 1.59103 1.12883 1.22128 1.16204 0.80074 0.81992 0.82296 1.90831 1.46885 1.67198 1.47780 1.45127 1.57744 1.16383 1.18394 1.18954 0.94330 0.79216 0.94802 1.21279 1.35188 1.00511 1.01448 0.92410 1.25603 0.96361 0.99380 0.96094 1.69982 1.46728 1.20459 1.19899 0.85828 0.79705 0.79108 0.79074 1.19033 1.19683 1.18365 1.20517 0.91420 0.99223 1.08525 0.90059 0.89866 0.91394 0.83901 0.83336 0.83660 0.89386 0.87731 0.88662 0.92121 0.75543 0.76093 0.96972 0.97360 0.91811 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.01 71.24 0.71 -0.61 16 2 C -0.06 -0.93 5.88 -19.88 -0.12 -1.05 16 3 C -0.17 -2.36 9.70 22.28 0.22 -2.14 16 4 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16 5 C -0.22 -3.51 9.04 22.36 0.20 -3.31 16 6 C 0.12 2.38 6.69 22.51 0.15 2.53 16 7 O -0.33 -7.20 10.08 -92.52 -0.93 -8.14 16 8 C 0.05 0.86 4.87 71.98 0.35 1.21 16 9 C 0.14 3.18 6.06 86.38 0.52 3.70 16 10 N -0.73 -20.81 5.51 -478.54 -2.64 -23.45 16 11 C 0.69 27.73 8.57 179.05 1.53 29.26 16 12 O -0.64 -30.83 16.34 -4.00 -0.07 -30.90 16 13 N -0.72 -30.57 5.55 -482.30 -2.68 -33.24 16 14 C 0.25 12.79 4.50 85.63 0.38 13.17 16 15 C -0.55 -30.89 9.83 25.60 0.25 -30.64 16 16 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 17 C 0.03 1.49 5.47 84.66 0.46 1.95 16 18 N -0.93 -56.38 13.96 21.45 0.30 -56.08 16 19 Si 0.94 44.80 27.47 68.60 1.88 46.68 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 23 C -0.18 -3.65 9.64 22.37 0.22 -3.43 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 26 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 29 H 0.15 1.63 6.30 -2.91 -0.02 1.61 16 30 H 0.09 1.10 7.66 -2.39 -0.02 1.09 16 31 H 0.10 1.14 7.66 -2.38 -0.02 1.12 16 32 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.41 9.70 8.49 -92.71 -0.79 8.91 16 35 H 0.40 15.06 8.33 -92.71 -0.77 14.29 16 36 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 37 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 38 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -73.78 334.09 0.44 -73.34 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.55 Total: 22.00 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.11 Total: 9.79 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -5.01 Total: -112.77 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.00 Total: -39.04 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Total: -73.78 0.44 -73.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362461388.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.888 kcal (2) G-P(sol) polarization free energy of solvation -73.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds