Wall clock time and date at job start Tue Mar 31 2020 00:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 116.99555 * 2 1 4 4 C 1.39340 * 120.53976 * 0.30348 * 3 2 1 5 5 C 1.38306 * 118.43708 * 180.21633 * 4 3 2 6 6 C 1.50706 * 120.27732 * 179.78446 * 5 4 3 7 7 C 1.38770 * 119.44606 * 359.50181 * 5 4 3 8 8 N 1.31376 * 121.06658 * 0.23473 * 7 5 4 9 9 C 1.32864 * 121.69509 * 0.02562 * 8 7 5 10 10 C 1.47822 * 119.78189 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00050 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00027 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46799 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46781 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47097 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00060 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99776 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47206 * 120.00389 * 20 18 16 23 23 H 1.48500 * 109.47289 * 239.99919 * 20 18 16 24 24 H 1.08995 * 109.47232 * 60.00126 * 1 2 3 25 25 H 1.09011 * 109.46742 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47322 * 299.99439 * 1 2 3 27 27 H 1.08002 * 120.78718 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46953 * 269.71587 * 6 5 4 29 29 H 1.09000 * 109.47318 * 29.71184 * 6 5 4 30 30 H 1.09000 * 109.47161 * 149.71815 * 6 5 4 31 31 H 1.07998 * 119.46755 * 180.25574 * 7 5 4 32 32 H 0.97001 * 120.00126 * 359.97438 * 12 10 9 33 33 H 1.08990 * 109.47058 * 299.99932 * 13 12 10 34 34 H 1.09001 * 109.46868 * 60.00208 * 13 12 10 35 35 H 1.08999 * 109.47561 * 299.99798 * 14 13 12 36 36 H 1.08993 * 109.46954 * 60.00435 * 14 13 12 37 37 H 1.09002 * 109.47354 * 300.00188 * 15 14 13 38 38 H 1.09001 * 109.47448 * 59.99947 * 15 14 13 39 39 H 0.97005 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3843 0.0064 5 6 1.9694 3.5928 0.0015 6 6 1.2016 4.8897 0.0032 7 6 3.3570 3.6013 0.0010 8 7 4.0418 2.4801 0.0005 9 6 3.4409 1.2951 -0.0001 10 6 4.2531 0.0600 -0.0012 11 8 3.7075 -1.0262 -0.0013 12 7 5.5986 0.1382 -0.0011 13 6 6.4035 -1.0859 -0.0016 14 6 7.8890 -0.7194 -0.0020 15 6 8.7296 -1.9977 -0.0032 16 6 10.1928 -1.6368 -0.0030 17 1 10.4931 -0.5995 -0.0025 18 6 11.1481 -2.6311 -0.0034 19 7 10.7824 -3.8943 -0.0046 20 14 12.9617 -2.1836 -0.0038 21 1 13.1070 -0.7057 -0.0043 22 1 13.6103 -2.7450 1.2083 23 1 13.6097 -2.7445 -1.2166 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2172 2.3527 0.0110 28 1 1.0162 5.2034 -1.0241 29 1 0.2508 4.7484 0.5171 30 1 1.7826 5.6552 0.5176 31 1 3.8826 4.5448 0.0014 32 1 6.0341 1.0050 -0.0006 33 1 6.1738 -1.6721 0.8880 34 1 6.1739 -1.6713 -0.8920 35 1 8.1185 -0.1333 -0.8919 36 1 8.1190 -0.1338 0.8880 37 1 8.5003 -2.5843 0.8864 38 1 8.4996 -2.5831 -0.8935 39 1 11.4545 -4.5938 -0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362557118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:34 Heat of formation + Delta-G solvation = -55.431054 kcal Electronic energy + Delta-G solvation = -20615.236305 eV Core-core repulsion = 17329.788382 eV Total energy + Delta-G solvation = -3285.447923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15026 -38.88958 -38.47427 -35.26077 -34.11693 -33.14767 -31.26528 -31.05368 -28.53949 -27.70878 -26.37721 -23.94040 -23.19312 -22.36584 -20.62612 -20.26727 -18.14801 -17.63843 -17.40314 -16.28920 -16.24621 -15.39551 -15.14480 -15.00540 -14.42779 -14.40080 -14.35601 -14.00566 -13.74606 -13.38710 -13.06010 -12.88259 -12.56821 -12.22574 -11.75174 -11.74922 -11.73843 -11.60281 -10.87041 -10.65377 -10.51914 -10.22202 -9.86412 -9.77524 -9.75979 -9.29669 -9.03717 -8.76335 -8.49807 -8.31978 -5.96564 -3.99041 0.43622 0.94603 2.81201 2.88455 3.34000 3.37566 3.41462 3.45787 3.75412 4.07789 4.20218 4.43335 4.49543 4.56336 4.64475 4.73360 4.81803 5.08671 5.09668 5.15069 5.23483 5.39296 5.48452 5.57716 5.74266 5.85739 5.88989 6.07092 6.27350 6.62075 6.70750 6.92073 6.96559 7.09646 7.48863 7.70815 7.83908 7.92946 8.03179 8.44297 8.53361 9.08043 9.64809 11.14885 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.002904 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.366033 B = 9638.949730 C =10508.963491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.141 3.859 4 C -0.180 4.180 5 C -0.077 4.077 6 C -0.114 4.114 7 C 0.057 3.943 8 N -0.415 5.415 9 C 0.042 3.958 10 C 0.564 3.436 11 O -0.522 6.522 12 N -0.708 5.708 13 C 0.117 3.883 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.106 0.894 26 H 0.056 0.944 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.407 0.593 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 17.429 -0.008 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.180 6.180 3 C 0.090 3.910 4 C -0.207 4.207 5 C -0.080 4.080 6 C -0.171 4.171 7 C -0.104 4.104 8 N -0.126 5.126 9 C -0.097 4.097 10 C 0.348 3.652 11 O -0.397 6.397 12 N -0.359 5.359 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.074 0.926 25 H 0.124 0.876 26 H 0.074 0.926 27 H 0.163 0.837 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.181 0.819 32 H 0.242 0.758 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.012 16.187 -0.008 28.135 hybrid contribution 0.032 0.753 -0.006 0.754 sum -22.980 16.941 -0.014 28.549 Atomic orbital electron populations 1.23220 0.78644 1.04741 1.01062 1.86457 1.20808 1.24427 1.86264 1.20059 0.92313 0.85661 0.93003 1.21606 1.00850 0.91257 1.06949 1.20991 0.95272 0.95737 0.95966 1.20812 0.99865 0.93375 1.03082 1.22616 0.90551 0.96466 1.00767 1.67634 1.39727 0.97365 1.07873 1.20823 0.88655 0.93002 1.07248 1.17610 0.82569 0.87071 0.77932 1.90827 1.71803 1.27519 1.49559 1.46032 1.05361 1.11281 1.73249 1.21681 0.91425 0.85466 1.02023 1.21886 0.91177 1.01775 1.01023 1.19039 0.93639 0.91101 0.97653 1.21264 0.91234 0.92781 1.50527 0.92556 1.25036 0.99124 0.95021 0.95371 1.69981 1.33503 0.99050 1.50853 0.86529 0.85333 0.78544 0.77540 1.19736 1.21040 1.21046 0.92575 0.87562 0.92570 0.83746 0.90248 0.91079 0.90490 0.81852 0.75788 0.91660 0.91667 0.92652 0.92649 0.96255 0.96253 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.14 16 2 O -0.27 -3.63 8.56 -40.59 -0.35 -3.97 16 3 C 0.14 1.81 6.71 -38.56 -0.26 1.55 16 4 C -0.18 -1.62 8.80 -39.15 -0.34 -1.97 16 5 C -0.08 -0.62 5.90 -104.40 -0.62 -1.23 16 6 C -0.11 -0.48 10.03 36.01 0.36 -0.12 16 7 C 0.06 0.55 10.85 -17.55 -0.19 0.35 16 8 N -0.42 -5.40 9.54 -9.71 -0.09 -5.49 16 9 C 0.04 0.62 6.76 -82.88 -0.56 0.06 16 10 C 0.56 10.10 7.80 -12.34 -0.10 10.00 16 11 O -0.52 -10.86 15.14 -16.63 -0.25 -11.11 16 12 N -0.71 -12.15 5.54 -61.26 -0.34 -12.49 16 13 C 0.12 2.24 5.67 -4.04 -0.02 2.22 16 14 C -0.12 -2.52 5.27 -26.73 -0.14 -2.66 16 15 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 20 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H 0.06 0.32 7.71 -51.93 -0.40 -0.08 16 25 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 27 H 0.14 0.86 6.46 -52.49 -0.34 0.52 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.24 8.09 -51.93 -0.42 -0.18 16 30 H 0.08 0.25 8.09 -51.93 -0.42 -0.17 16 31 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.41 6.26 7.80 -40.82 -0.32 5.94 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -35.06 335.17 -7.33 -42.39 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.64 Total: -0.78 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.43 Total: -3.87 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.30 Total: -44.60 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.60 Total: -15.09 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.06 -7.33 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362557118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.038 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds