Wall clock time and date at job start Tue Mar 31 2020 00:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35648 * 116.99555 * 2 1 4 4 C 1.39340 * 120.53976 * 0.30348 * 3 2 1 5 5 C 1.38306 * 118.43708 * 180.21633 * 4 3 2 6 6 C 1.50706 * 120.27732 * 179.78446 * 5 4 3 7 7 C 1.38770 * 119.44606 * 359.50181 * 5 4 3 8 8 N 1.31376 * 121.06658 * 0.23473 * 7 5 4 9 9 C 1.32864 * 121.69509 * 0.02562 * 8 7 5 10 10 C 1.47822 * 119.78189 * 179.97438 * 9 8 7 11 11 O 1.21555 * 120.00050 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 120.00027 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46799 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46781 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47097 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00060 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99776 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47206 * 120.00389 * 20 18 16 23 23 H 1.48500 * 109.47289 * 239.99919 * 20 18 16 24 24 H 1.08995 * 109.47232 * 60.00126 * 1 2 3 25 25 H 1.09011 * 109.46742 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47322 * 299.99439 * 1 2 3 27 27 H 1.08002 * 120.78718 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.46953 * 269.71587 * 6 5 4 29 29 H 1.09000 * 109.47318 * 29.71184 * 6 5 4 30 30 H 1.09000 * 109.47161 * 149.71815 * 6 5 4 31 31 H 1.07998 * 119.46755 * 180.25574 * 7 5 4 32 32 H 0.97001 * 120.00126 * 359.97438 * 12 10 9 33 33 H 1.08990 * 109.47058 * 299.99932 * 13 12 10 34 34 H 1.09001 * 109.46868 * 60.00208 * 13 12 10 35 35 H 1.08999 * 109.47561 * 299.99798 * 14 13 12 36 36 H 1.08993 * 109.46954 * 60.00435 * 14 13 12 37 37 H 1.09002 * 109.47354 * 300.00188 * 15 14 13 38 38 H 1.09001 * 109.47448 * 59.99947 * 15 14 13 39 39 H 0.97005 * 119.99934 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3843 0.0064 5 6 1.9694 3.5928 0.0015 6 6 1.2016 4.8897 0.0032 7 6 3.3570 3.6013 0.0010 8 7 4.0418 2.4801 0.0005 9 6 3.4409 1.2951 -0.0001 10 6 4.2531 0.0600 -0.0012 11 8 3.7075 -1.0262 -0.0013 12 7 5.5986 0.1382 -0.0011 13 6 6.4035 -1.0859 -0.0016 14 6 7.8890 -0.7194 -0.0020 15 6 8.7296 -1.9977 -0.0032 16 6 10.1928 -1.6368 -0.0030 17 1 10.4931 -0.5995 -0.0025 18 6 11.1481 -2.6311 -0.0034 19 7 10.7824 -3.8943 -0.0046 20 14 12.9617 -2.1836 -0.0038 21 1 13.1070 -0.7057 -0.0043 22 1 13.6103 -2.7450 1.2083 23 1 13.6097 -2.7445 -1.2166 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 0.2172 2.3527 0.0110 28 1 1.0162 5.2034 -1.0241 29 1 0.2508 4.7484 0.5171 30 1 1.7826 5.6552 0.5176 31 1 3.8826 4.5448 0.0014 32 1 6.0341 1.0050 -0.0006 33 1 6.1738 -1.6721 0.8880 34 1 6.1739 -1.6713 -0.8920 35 1 8.1185 -0.1333 -0.8919 36 1 8.1190 -0.1338 0.8880 37 1 8.5003 -2.5843 0.8864 38 1 8.4996 -2.5831 -0.8935 39 1 11.4545 -4.5938 -0.0045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362557118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:33 Heat of formation + Delta-G solvation = -79.553648 kcal Electronic energy + Delta-G solvation = -20616.282340 eV Core-core repulsion = 17329.788382 eV Total energy + Delta-G solvation = -3286.493958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.02959 -40.19406 -39.29784 -36.95624 -35.23922 -34.73896 -32.94783 -32.03379 -29.40100 -28.69204 -27.78796 -25.27048 -24.37657 -23.34864 -22.30367 -21.66540 -19.23418 -18.58596 -18.49239 -18.16827 -17.12688 -16.75901 -16.56022 -16.38918 -16.07931 -15.48405 -15.10698 -14.79955 -14.77292 -14.54755 -14.20921 -13.76201 -13.68442 -13.58857 -13.36514 -12.99464 -12.76980 -12.56587 -12.41893 -12.39822 -12.35190 -11.69496 -11.64140 -11.28545 -11.16012 -10.64580 -10.56108 -10.53769 -10.14152 -9.47190 -8.19450 -6.31003 -0.42234 0.19365 1.41679 1.42276 1.55892 1.70304 2.08040 2.19202 2.42901 2.76339 3.14096 3.18601 3.52699 3.69002 3.89645 4.04459 4.13607 4.18843 4.22240 4.30114 4.33296 4.53537 4.60539 4.72001 4.82223 4.87017 4.92095 4.97422 5.15060 5.15382 5.19053 5.41623 5.47228 5.52082 5.69658 5.83659 6.18940 6.22398 6.44698 6.79314 6.86143 7.19406 7.38368 8.93127 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030885 B = 0.002904 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.366033 B = 9638.949730 C =10508.963491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.176 4.176 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.053 3.947 8 N -0.434 5.434 9 C -0.005 4.005 10 C 0.560 3.440 11 O -0.564 6.564 12 N -0.703 5.703 13 C 0.130 3.870 14 C -0.101 4.101 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.179 0.821 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.196 0.804 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.066 0.934 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.721 21.090 -0.002 32.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.080 3.920 4 C -0.201 4.201 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.110 4.110 8 N -0.146 5.146 9 C -0.141 4.141 10 C 0.347 3.653 11 O -0.442 6.442 12 N -0.354 5.354 13 C 0.006 3.994 14 C -0.139 4.139 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.182 1.182 22 H -0.204 1.204 23 H -0.205 1.205 24 H 0.095 0.905 25 H 0.129 0.871 26 H 0.095 0.905 27 H 0.196 0.804 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.213 0.787 32 H 0.253 0.747 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.012 0.988 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.039 19.867 -0.001 31.186 hybrid contribution 0.196 -0.278 -0.010 0.341 sum -23.843 19.589 -0.011 30.858 Atomic orbital electron populations 1.23532 0.76074 1.05872 1.03043 1.86399 1.23695 1.25533 1.86390 1.20245 0.91938 0.86804 0.93043 1.21993 1.02351 0.90064 1.05739 1.21488 0.94920 0.97120 0.92419 1.20954 1.00228 0.91304 1.04466 1.23293 0.91786 0.96394 0.99551 1.67530 1.40732 0.97631 1.08664 1.20326 0.89314 0.92310 1.12122 1.18183 0.82516 0.88065 0.76559 1.90779 1.72489 1.29458 1.51506 1.45845 1.05411 1.10729 1.73440 1.21304 0.90910 0.86302 1.00846 1.21596 0.91065 0.99179 1.02031 1.18939 0.94242 0.92943 0.95163 1.21701 0.92347 0.93373 1.50439 0.91611 1.26049 1.04600 0.94809 0.94721 1.70124 1.35402 1.00336 1.51734 0.85329 0.78642 0.78948 0.77690 1.18239 1.20440 1.20457 0.90494 0.87102 0.90473 0.80367 0.88666 0.89463 0.88900 0.78734 0.74666 0.92953 0.92962 0.91523 0.91518 0.98828 0.98824 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.24 16 2 O -0.31 -8.46 8.56 -68.64 -0.59 -9.05 16 3 C 0.13 3.32 6.71 22.93 0.15 3.48 16 4 C -0.18 -2.67 8.80 22.55 0.20 -2.47 16 5 C -0.06 -0.70 5.90 -19.72 -0.12 -0.82 16 6 C -0.11 -0.38 10.03 71.24 0.71 0.33 16 7 C 0.05 0.87 10.85 84.89 0.92 1.79 16 8 N -0.43 -11.00 9.54 -184.63 -1.76 -12.76 16 9 C 0.00 -0.15 6.76 41.92 0.28 0.14 16 10 C 0.56 21.14 7.80 86.78 0.68 21.81 16 11 O -0.56 -25.08 15.14 17.10 0.26 -24.82 16 12 N -0.70 -25.11 5.54 -465.99 -2.58 -27.70 16 13 C 0.13 5.27 5.67 86.38 0.49 5.76 16 14 C -0.10 -4.30 5.27 30.60 0.16 -4.14 16 15 C 0.02 1.36 4.97 29.85 0.15 1.51 16 16 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 20 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 24 H 0.08 0.72 7.71 -2.39 -0.02 0.70 16 25 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.08 0.72 7.68 -2.39 -0.02 0.70 16 27 H 0.18 1.36 6.46 -2.91 -0.02 1.34 16 28 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.09 0.10 8.09 -2.39 -0.02 0.08 16 30 H 0.09 0.10 8.09 -2.39 -0.02 0.08 16 31 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.42 13.05 7.80 -92.71 -0.72 12.33 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.41 16 38 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -80.04 335.17 3.41 -76.62 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.33 Total: 11.25 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.44 Total: -2.28 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -4.06 Total: -98.75 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.33 Total: -33.87 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -80.04 3.41 -76.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362557118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.929 kcal (2) G-P(sol) polarization free energy of solvation -80.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds