Wall clock time and date at job start Mon Mar 30 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36018 * 116.99547 * 2 1 4 4 C 1.38501 * 120.08309 * 0.02562 * 3 2 1 5 5 C 1.38282 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.50702 * 119.90620 * 179.97438 * 5 4 3 7 7 C 1.38254 * 120.17807 * 359.74280 * 5 4 3 8 8 C 1.38217 * 120.16409 * 0.51592 * 7 5 4 9 9 C 1.38725 * 119.97791 * 359.48488 * 8 7 5 10 10 N 1.39968 * 120.09216 * 180.23540 * 9 8 7 11 11 C 1.46499 * 119.99708 * 0.02562 * 10 9 8 12 12 C 1.50703 * 109.47147 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99699 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00054 * 179.97438 * 12 11 10 15 15 C 1.46504 * 120.00015 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.46947 * 180.02562 * 15 14 12 17 17 H 1.08001 * 120.00292 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99525 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00477 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99799 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47101 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47038 * 120.00109 * 20 18 16 23 23 H 1.48502 * 109.47258 * 240.00199 * 20 18 16 24 24 H 1.09008 * 109.46730 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47452 * 300.00149 * 1 2 3 26 26 H 1.09000 * 109.47277 * 60.00291 * 1 2 3 27 27 H 1.08002 * 119.98665 * 359.95597 * 4 3 2 28 28 H 1.09004 * 109.46899 * 89.99914 * 6 5 4 29 29 H 1.08995 * 109.46822 * 209.99492 * 6 5 4 30 30 H 1.08990 * 109.47288 * 329.99841 * 6 5 4 31 31 H 1.08008 * 119.91586 * 180.27698 * 7 5 4 32 32 H 1.08002 * 120.01488 * 179.76977 * 8 7 5 33 33 H 0.96999 * 120.00401 * 180.02562 * 10 9 8 34 34 H 1.09004 * 109.47296 * 299.99612 * 11 10 9 35 35 H 1.08997 * 109.47320 * 60.00115 * 11 10 9 36 36 H 0.97001 * 120.00241 * 0.02562 * 14 12 11 37 37 H 1.09004 * 109.46689 * 300.00217 * 15 14 12 38 38 H 1.08997 * 109.46972 * 60.00135 * 15 14 12 39 39 H 0.97004 * 120.00664 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2120 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9227 3.6060 0.0011 6 6 1.1012 4.8694 0.0011 7 6 3.3032 3.6812 0.0064 8 6 4.0617 2.5258 0.0005 9 6 3.4376 1.2869 0.0000 10 7 4.2034 0.1153 -0.0010 11 6 5.6661 0.1964 -0.0009 12 6 6.2464 -1.1945 -0.0027 13 8 5.5104 -2.1585 -0.0044 14 7 7.5830 -1.3670 -0.0035 15 6 8.1471 -2.7191 -0.0047 16 6 9.6518 -2.6357 -0.0047 17 1 10.1392 -1.6719 -0.0043 18 6 10.4061 -3.7897 -0.0052 19 7 9.8126 -4.9633 -0.0062 20 14 12.2713 -3.6864 -0.0060 21 1 12.6880 -2.2611 -0.0053 22 1 12.8047 -4.3582 1.2062 23 1 12.8038 -4.3577 -1.2189 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2151 2.3193 0.0002 28 1 0.9027 5.1737 1.0288 29 1 1.6495 5.6593 -0.5123 30 1 0.1573 4.6890 -0.5131 31 1 3.7901 4.6453 0.0114 32 1 5.1400 2.5874 0.0010 33 1 3.7657 -0.7503 -0.0017 34 1 6.0005 0.7303 -0.8905 35 1 6.0005 0.7287 0.8895 36 1 8.1716 -0.5960 -0.0025 37 1 7.8131 -3.2529 0.8851 38 1 7.8123 -3.2516 -0.8949 39 1 10.3433 -5.7753 -0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383932487.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:00 Heat of formation + Delta-G solvation = -56.053477 kcal Electronic energy + Delta-G solvation = -20578.264536 eV Core-core repulsion = 17292.789622 eV Total energy + Delta-G solvation = -3285.474914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32621 -38.99159 -37.59421 -35.57875 -34.24732 -32.41583 -31.47283 -30.21397 -28.54717 -27.67651 -26.54141 -24.94636 -22.78128 -22.02360 -21.04858 -19.80139 -18.22805 -17.36898 -16.61302 -16.27068 -15.82249 -15.45361 -15.25175 -15.20416 -14.65187 -14.34710 -13.95664 -13.80173 -13.76385 -13.42283 -13.28353 -12.64293 -12.33326 -12.28084 -12.07415 -12.00224 -11.69228 -11.39007 -11.07348 -11.01147 -10.97664 -10.93234 -10.36034 -9.89487 -9.43021 -9.23100 -8.79269 -8.55519 -7.98734 -7.06345 -6.20228 -4.27561 1.38665 1.55106 3.20349 3.20558 3.21849 3.28683 3.31575 3.43516 3.79156 4.11704 4.34428 4.72002 4.83560 4.98641 5.04931 5.07270 5.16135 5.20005 5.28965 5.37847 5.43291 5.47709 5.50057 5.53542 5.56896 5.66197 5.87991 6.13169 6.28240 6.62362 6.76812 7.04915 7.24044 7.32172 7.45733 7.53444 7.62354 7.91066 7.96249 8.51822 8.70613 8.97009 9.39028 10.89991 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033693 B = 0.002902 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.838581 B = 9645.460556 C =10445.247166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.055 3.945 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.102 4.102 8 C -0.172 4.172 9 C 0.201 3.799 10 N -0.727 5.727 11 C 0.105 3.895 12 C 0.493 3.507 13 O -0.551 6.551 14 N -0.707 5.707 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.064 0.936 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.097 0.903 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.124 0.876 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.393 0.607 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 18.139 0.036 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.232 6.232 3 C 0.006 3.994 4 C -0.180 4.180 5 C -0.122 4.122 6 C -0.160 4.160 7 C -0.121 4.121 8 C -0.195 4.195 9 C 0.097 3.903 10 N -0.361 5.361 11 C -0.024 4.024 12 C 0.277 3.723 13 O -0.430 6.430 14 N -0.355 5.355 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.083 0.917 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.256 0.744 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.226 0.774 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.283 17.014 0.033 23.551 hybrid contribution 0.961 0.079 0.007 0.965 sum -15.322 17.093 0.040 22.955 Atomic orbital electron populations 1.22962 0.78763 1.03653 1.00841 1.86051 1.20962 1.26438 1.89736 1.18428 0.90296 0.84879 1.05759 1.20800 0.99224 0.91314 1.06698 1.19390 0.93836 0.94188 1.04774 1.20644 0.98957 0.94729 1.01711 1.20654 0.92880 0.97624 1.00976 1.20500 0.99869 0.90089 1.09042 1.17212 0.87153 0.87628 0.98337 1.44326 1.03561 1.06645 1.81523 1.21092 0.82110 0.96325 1.02844 1.20350 0.83733 0.90335 0.77926 1.90664 1.59365 1.41882 1.51075 1.46405 1.05052 1.12181 1.71862 1.19157 0.92966 0.77131 0.97896 1.21247 0.90439 0.93236 1.53297 0.91741 1.24961 0.99405 0.95051 0.94638 1.69981 1.35901 0.97518 1.48837 0.86343 0.84419 0.78269 0.77776 1.19591 1.20778 1.20772 0.88477 0.93029 0.93036 0.85810 0.91841 0.91888 0.92231 0.86187 0.85342 0.74415 0.89757 0.89753 0.77424 0.95387 0.95378 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.30 9.75 -19.80 -0.19 -4.50 16 3 C 0.05 0.74 6.70 -39.08 -0.26 0.48 16 4 C -0.16 -1.81 8.69 -39.47 -0.34 -2.15 16 5 C -0.12 -1.25 5.88 -104.60 -0.62 -1.87 16 6 C -0.10 -0.78 10.01 36.01 0.36 -0.42 16 7 C -0.10 -1.09 9.69 -39.58 -0.38 -1.47 16 8 C -0.17 -2.06 9.31 -39.41 -0.37 -2.42 16 9 C 0.20 2.83 6.67 -83.56 -0.56 2.27 16 10 N -0.73 -11.27 5.70 -59.66 -0.34 -11.61 16 11 C 0.10 1.51 5.40 -5.19 -0.03 1.48 16 12 C 0.49 9.62 7.90 -10.98 -0.09 9.54 16 13 O -0.55 -13.07 15.67 5.56 0.09 -12.98 16 14 N -0.71 -14.42 5.55 -61.47 -0.34 -14.76 16 15 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 16 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 20 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.10 0.72 8.14 -51.92 -0.42 0.29 16 25 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.32 6.74 -52.49 -0.35 0.97 16 33 H 0.42 7.31 6.80 -40.82 -0.28 7.03 16 34 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 35 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 36 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -32.64 333.12 -7.20 -39.84 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.41 Total: 8.58 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.74 Total: -0.03 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.05 Total: -51.58 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.11 Total: -17.48 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.64 -7.20 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383932487.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.212 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds