Wall clock time and date at job start Mon Mar 30 2020 23:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38309 * 119.96036 * 2 1 4 4 C 1.38272 * 120.14681 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07563 * 0.25962 * 4 3 2 6 6 C 1.38898 * 119.91986 * 359.44373 * 5 4 3 7 7 N 1.39675 * 120.07050 * 180.27821 * 6 5 4 8 8 C 1.46500 * 120.00232 * 0.29683 * 7 6 5 9 9 C 1.52998 * 109.47206 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47221 * 300.00092 * 9 8 7 11 11 C 1.52999 * 109.47007 * 59.99944 * 9 8 7 12 12 C 1.50702 * 109.46902 * 180.02562 * 9 8 7 13 13 H 1.07999 * 120.00350 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99847 * 180.02562 * 12 9 8 15 15 N 1.31521 * 120.00140 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00211 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47089 * 60.00160 * 16 14 12 18 18 H 1.48497 * 109.47535 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47391 * 300.00207 * 16 14 12 20 20 C 1.38077 * 119.96408 * 179.97438 * 2 1 3 21 21 N 1.48009 * 120.03655 * 0.04179 * 20 2 1 22 22 O 1.21796 * 119.99985 * 89.99831 * 21 20 2 23 23 O 1.21802 * 119.99921 * 270.00195 * 21 20 2 24 24 H 1.09000 * 109.47152 * 89.99454 * 1 2 3 25 25 H 1.09000 * 109.47101 * 210.00009 * 1 2 3 26 26 H 1.09003 * 109.47088 * 330.00120 * 1 2 3 27 27 H 1.07996 * 119.93123 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.95912 * 179.97438 * 4 3 2 29 29 H 1.07990 * 120.03813 * 179.72222 * 5 4 3 30 30 H 0.96998 * 119.99563 * 180.29662 * 7 6 5 31 31 H 1.09000 * 109.46951 * 300.00115 * 8 7 6 32 32 H 1.09005 * 109.47062 * 59.99936 * 8 7 6 33 33 H 1.08994 * 109.47197 * 59.99746 * 10 9 8 34 34 H 1.08999 * 109.47288 * 180.02562 * 10 9 8 35 35 H 1.09005 * 109.47065 * 299.99965 * 10 9 8 36 36 H 1.09001 * 109.47004 * 60.00401 * 11 9 8 37 37 H 1.08999 * 109.46926 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47056 * 300.00037 * 11 9 8 39 39 H 0.96995 * 120.00535 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 -0.0043 6 6 3.5859 -1.1954 0.0019 7 7 4.2867 -2.4036 0.0029 8 6 5.7517 -2.4008 0.0039 9 6 6.2645 -3.8422 0.0054 10 6 5.7550 -4.5634 1.2549 11 6 5.7567 -4.5655 -1.2435 12 6 7.7715 -3.8392 0.0071 13 1 8.3097 -2.9029 0.0066 14 6 8.4632 -5.0319 0.0081 15 7 7.8079 -6.1722 0.0082 16 14 10.3311 -5.0283 0.0095 17 1 10.8239 -4.3268 1.2220 18 1 10.8289 -6.4274 0.0111 19 1 10.8257 -4.3279 -1.2029 20 6 2.1966 -1.1962 0.0005 21 7 1.4566 -2.4780 0.0002 22 8 1.1527 -3.0055 -1.0548 23 8 1.1514 -3.0053 1.0549 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6560 2.1325 -0.0004 28 1 4.1167 2.1402 0.0001 29 1 5.3564 0.0140 -0.0085 30 1 3.8033 -3.2445 0.0029 31 1 6.1146 -1.8866 -0.8861 32 1 6.1134 -1.8858 0.8939 33 1 4.6651 -4.5655 1.2542 34 1 6.1207 -5.5903 1.2563 35 1 6.1167 -4.0481 2.1447 36 1 6.1197 -4.0517 -2.1337 37 1 6.1217 -5.5926 -1.2422 38 1 4.6668 -4.5676 -1.2443 39 1 8.2944 -7.0113 0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413409500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:43 Heat of formation + Delta-G solvation = -0.124698 kcal Electronic energy + Delta-G solvation = -22064.703902 eV Core-core repulsion = 18781.654242 eV Total energy + Delta-G solvation = -3283.049660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.33867 -40.72492 -38.75188 -37.62359 -36.05512 -33.82527 -33.30284 -31.05985 -28.35283 -27.72882 -27.63238 -27.15629 -26.25829 -23.28289 -22.40941 -20.71431 -19.97305 -19.91246 -19.10919 -18.20376 -17.54713 -16.88403 -16.45200 -15.88015 -15.76815 -15.31725 -15.05143 -14.90346 -14.54477 -14.15009 -13.81450 -13.53941 -13.21942 -13.18903 -13.07840 -12.84858 -12.72528 -12.69044 -12.49617 -12.39329 -12.33605 -12.16875 -12.04866 -11.67263 -11.29432 -11.12074 -10.81580 -10.43915 -10.25693 -8.74647 -8.05523 -6.23875 -0.66317 -0.17629 0.29967 0.45210 1.44573 1.45310 1.52047 2.13157 2.45281 2.45845 3.18566 3.35869 3.72109 3.97589 4.02571 4.17255 4.25129 4.31295 4.39391 4.49225 4.55761 4.65033 4.78906 4.87097 4.89034 4.90518 5.01724 5.04481 5.12107 5.25153 5.30719 5.34987 5.51962 5.60341 5.63203 5.92907 5.97132 6.09835 6.26954 6.35717 6.38123 6.82114 7.45176 8.94047 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.004630 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.366229 B = 6045.837854 C = 6760.603753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.004 4.004 3 C -0.166 4.166 4 C -0.017 4.017 5 C -0.205 4.205 6 C 0.251 3.749 7 N -0.736 5.736 8 C 0.147 3.853 9 C 0.050 3.950 10 C -0.120 4.120 11 C -0.120 4.120 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.023 3.977 15 N -0.906 5.906 16 Si 0.953 3.047 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.272 1.272 20 C -0.148 4.148 21 N 0.033 4.967 22 O -0.166 6.166 23 O -0.171 6.171 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.118 0.882 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.148 0.852 30 H 0.390 0.610 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.011 0.989 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.011 0.989 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 16.798 -0.112 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.006 4.006 3 C -0.186 4.186 4 C -0.035 4.035 5 C -0.228 4.228 6 C 0.141 3.859 7 N -0.360 5.360 8 C 0.025 3.975 9 C 0.050 3.950 10 C -0.178 4.178 11 C -0.178 4.178 12 C -0.563 4.563 13 H 0.079 0.921 14 C -0.177 4.177 15 N -0.544 5.544 16 Si 0.780 3.220 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.197 1.197 20 C -0.234 4.234 21 N 0.558 4.442 22 O -0.387 6.387 23 O -0.391 6.391 24 H 0.111 0.889 25 H 0.062 0.938 26 H 0.136 0.864 27 H 0.196 0.804 28 H 0.196 0.804 29 H 0.166 0.834 30 H 0.224 0.776 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.030 0.970 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.291 17.229 -0.101 19.575 hybrid contribution 0.620 -1.720 0.013 1.828 sum -8.670 15.510 -0.087 17.769 Atomic orbital electron populations 1.21058 0.88668 1.04485 1.04259 1.19730 0.97559 0.89691 0.93613 1.21204 0.94332 0.96673 1.06387 1.21670 0.94195 0.98275 0.89404 1.21006 1.01289 0.89634 1.10883 1.17868 0.87284 0.89184 0.91579 1.45415 1.07755 1.04577 1.78254 1.21568 0.76230 0.99457 1.00290 1.18349 0.94824 0.89512 0.92338 1.21674 0.95529 1.02848 0.97717 1.21672 0.95540 1.02844 0.97708 1.21196 0.90852 0.92779 1.51464 0.92134 1.25600 1.02258 0.95310 0.94535 1.69946 1.36349 0.97614 1.50482 0.85685 0.80846 0.76780 0.78724 1.19759 1.21523 1.19740 1.20492 0.90335 0.82757 1.29833 1.43862 0.98271 1.02597 0.99458 1.94515 1.57160 1.65997 1.21060 1.94520 1.57347 1.66092 1.21113 0.88885 0.93774 0.86386 0.80418 0.80395 0.83430 0.77609 0.92076 0.92107 0.96983 0.91969 0.95462 0.95441 0.91974 0.96975 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.77 71.24 0.70 -1.64 16 2 C 0.00 -0.10 5.88 -19.89 -0.12 -0.22 16 3 C -0.17 -2.64 9.70 22.29 0.22 -2.42 16 4 C -0.02 -0.28 10.04 22.25 0.22 -0.06 16 5 C -0.20 -5.02 9.31 22.40 0.21 -4.81 16 6 C 0.25 7.99 6.65 38.21 0.25 8.24 16 7 N -0.74 -27.32 5.12 -339.41 -1.74 -29.06 16 8 C 0.15 5.71 3.74 86.38 0.32 6.04 16 9 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 10 C -0.12 -5.75 8.08 71.98 0.58 -5.17 16 11 C -0.12 -5.75 8.08 71.98 0.58 -5.16 16 12 C -0.52 -26.63 8.01 25.60 0.21 -26.42 16 13 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.02 1.18 5.15 84.65 0.44 1.61 16 15 N -0.91 -49.41 9.35 21.45 0.20 -49.21 16 16 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C -0.15 -4.63 6.14 36.50 0.22 -4.41 16 21 N 0.03 1.17 2.43 -46.17 -0.11 1.06 16 22 O -0.17 -6.28 19.25 18.89 0.36 -5.91 16 23 O -0.17 -6.51 19.12 18.88 0.36 -6.14 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.00 7.31 -2.39 -0.02 0.98 16 26 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 29 H 0.15 3.44 6.73 -2.92 -0.02 3.42 16 30 H 0.39 15.93 5.42 -92.71 -0.50 15.43 16 31 H 0.06 2.28 7.94 -2.39 -0.02 2.27 16 32 H 0.06 2.28 7.96 -2.38 -0.02 2.26 16 33 H 0.01 0.52 6.86 -2.39 -0.02 0.50 16 34 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 35 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 38 H 0.01 0.52 6.86 -2.39 -0.02 0.51 16 39 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -61.06 323.09 5.47 -55.59 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.56 Total: 22.20 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 3.81 Total: -32.09 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -1.65 Total: -77.21 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.72 Total: -12.06 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -61.06 5.47 -55.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413409500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.463 kcal (2) G-P(sol) polarization free energy of solvation -61.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds