Wall clock time and date at job start Mon Mar 30 2020 23:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38308 * 119.95963 * 2 1 4 4 C 1.38263 * 120.14847 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07570 * 0.02562 * 4 3 2 6 6 N 1.48006 * 120.03705 * 179.97438 * 5 4 3 7 7 O 1.21794 * 119.99950 * 37.25296 * 6 5 4 8 8 O 1.21804 * 119.99637 * 217.25380 * 6 5 4 9 9 C 1.38890 * 119.92116 * 359.97438 * 5 4 3 10 10 N 1.39672 * 120.07081 * 180.02562 * 9 5 4 11 11 C 1.46503 * 120.00109 * 185.95700 * 10 9 5 12 12 C 1.52997 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47225 * 300.00547 * 12 11 10 14 14 C 1.53000 * 109.46833 * 60.00590 * 12 11 10 15 15 C 1.50701 * 109.47021 * 180.02562 * 12 11 10 16 16 H 1.07995 * 120.00058 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99864 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00187 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00154 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47037 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47165 * 119.99758 * 19 17 15 22 22 H 1.48498 * 109.47428 * 239.99850 * 19 17 15 23 23 C 1.38080 * 119.96268 * 180.25660 * 2 1 3 24 24 H 1.09002 * 109.46796 * 89.99841 * 1 2 3 25 25 H 1.08995 * 109.47050 * 209.99535 * 1 2 3 26 26 H 1.08994 * 109.47036 * 329.99892 * 1 2 3 27 27 H 1.07999 * 119.93001 * 359.95188 * 3 2 1 28 28 H 1.08002 * 119.96459 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00248 * 5.96564 * 10 9 5 30 30 H 1.09006 * 109.46722 * 60.00350 * 11 10 9 31 31 H 1.08997 * 109.47183 * 300.01245 * 11 10 9 32 32 H 1.09004 * 109.47287 * 59.99929 * 13 12 11 33 33 H 1.09002 * 109.46892 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.46966 * 299.99210 * 13 12 11 35 35 H 1.09000 * 109.47576 * 59.99710 * 14 12 11 36 36 H 1.09002 * 109.47336 * 179.97438 * 14 12 11 37 37 H 1.09004 * 109.47090 * 299.99711 * 14 12 11 38 38 H 0.97000 * 120.00524 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.03998 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0005 6 7 5.7566 0.0157 0.0005 7 8 6.3622 0.8576 0.6390 8 8 6.3689 -0.8216 -0.6380 9 6 3.5860 -1.1953 0.0005 10 7 4.2868 -2.4035 0.0011 11 6 3.5628 -3.6703 -0.1306 12 6 4.5580 -4.8320 -0.1003 13 6 5.5468 -4.6869 -1.2587 14 6 5.3203 -4.8159 1.2261 15 6 3.8132 -6.1351 -0.2364 16 1 2.7378 -6.1346 -0.3350 17 6 4.5049 -7.3278 -0.2349 18 7 5.8146 -7.3283 -0.1152 19 14 3.5819 -8.9430 -0.4043 20 1 2.1269 -8.6713 -0.5248 21 1 4.0536 -9.6578 -1.6174 22 1 3.8314 -9.7838 0.7941 23 6 2.1967 -1.1962 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5138 27 1 1.6560 2.1325 -0.0008 28 1 4.1167 2.1403 0.0001 29 1 5.2528 -2.4038 0.0888 30 1 3.0193 -3.6816 -1.0754 31 1 2.8586 -3.7738 0.6949 32 1 6.0855 -3.7443 -1.1607 33 1 6.2560 -5.5143 -1.2368 34 1 5.0036 -4.6984 -2.2036 35 1 4.6159 -4.9193 2.0515 36 1 6.0290 -5.6438 1.2480 37 1 5.8591 -3.8734 1.3242 38 1 6.3013 -8.1674 -0.1146 39 1 1.6567 -2.1315 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413413300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:57 Heat of formation + Delta-G solvation = 9.363104 kcal Electronic energy + Delta-G solvation = -21990.008413 eV Core-core repulsion = 18707.370175 eV Total energy + Delta-G solvation = -3282.638238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.91749 -39.63349 -37.22401 -36.19070 -34.47471 -32.98849 -31.37990 -29.05667 -28.47704 -25.88348 -25.75550 -25.10733 -24.54959 -22.13029 -21.49665 -19.11101 -18.73599 -18.41047 -17.49780 -16.64142 -15.79413 -15.63478 -14.89626 -14.69976 -14.41178 -14.17268 -13.91533 -13.67791 -12.95839 -12.55095 -12.49843 -12.26731 -12.22634 -11.52621 -11.47029 -11.30326 -11.26153 -11.01583 -10.85605 -10.76416 -10.70706 -10.52635 -10.24664 -10.04666 -9.59642 -9.46214 -9.22719 -8.86400 -8.45756 -7.53960 -6.08195 -4.20425 0.29466 1.31544 1.44079 1.76790 3.21856 3.30624 3.32380 3.43448 3.52674 4.33005 4.46069 4.55533 4.92213 4.99691 5.14307 5.18215 5.31074 5.37531 5.58192 5.73514 5.79636 5.91850 5.94859 6.02705 6.30284 6.35054 6.45262 6.60724 6.71453 6.82207 6.88871 6.98785 7.18169 7.36369 7.50257 7.62119 7.77706 7.94335 7.94876 8.08742 8.30161 8.79507 9.45954 10.93096 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.005022 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.485421 B = 5574.097925 C = 6706.957667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.010 4.010 5 C -0.142 4.142 6 N 0.043 4.957 7 O -0.172 6.172 8 O -0.178 6.178 9 C 0.291 3.709 10 N -0.704 5.704 11 C 0.124 3.876 12 C 0.058 3.942 13 C -0.134 4.134 14 C -0.132 4.132 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.881 5.881 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.202 4.202 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.015 0.985 33 H 0.086 0.914 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 13.923 0.323 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.005 3.995 3 C -0.213 4.213 4 C -0.030 4.030 5 C -0.232 4.232 6 N 0.557 4.443 7 O -0.387 6.387 8 O -0.388 6.388 9 C 0.174 3.826 10 N -0.329 5.329 11 C 0.002 3.998 12 C 0.058 3.942 13 C -0.192 4.192 14 C -0.190 4.190 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.519 5.519 19 Si 0.722 3.278 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.225 4.225 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.254 0.746 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.107 0.893 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.247 13.488 0.294 16.356 hybrid contribution 0.388 -0.884 -0.050 0.967 sum -8.859 12.603 0.245 15.407 Atomic orbital electron populations 1.20915 0.90293 1.03480 1.03078 1.19986 0.96496 0.92313 0.90688 1.20626 0.92186 0.98171 1.10339 1.20569 0.94505 0.95422 0.92489 1.20402 0.78244 0.95809 1.28731 1.43506 1.03670 0.99288 0.97853 1.94481 1.69874 1.33129 1.41227 1.94527 1.69368 1.33350 1.41541 1.17640 0.91913 0.84782 0.88278 1.46012 1.11054 1.03313 1.72491 1.22024 0.96280 0.81690 0.99836 1.18339 0.91809 0.90860 0.93216 1.21848 1.00242 0.99865 0.97260 1.21848 1.00438 0.99508 0.97211 1.20937 0.93188 0.89766 1.51006 0.92429 1.24892 0.94866 0.99028 0.94667 1.69822 1.06041 1.26420 1.49614 0.86502 0.79966 0.83588 0.77712 1.19834 1.20967 1.21009 1.20627 0.90441 0.99431 1.12027 0.90187 0.90744 0.90895 0.84696 0.84305 0.74649 0.92249 0.92528 0.96634 0.89502 0.95433 0.95478 0.89283 0.97646 0.92877 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 36.01 0.36 -0.54 16 2 C 0.01 0.07 5.88 -104.65 -0.62 -0.54 16 3 C -0.19 -2.00 9.70 -39.55 -0.38 -2.38 16 4 C -0.01 -0.13 9.66 -39.61 -0.38 -0.51 16 5 C -0.14 -2.26 6.52 -79.75 -0.52 -2.78 16 6 N 0.04 0.77 4.29 34.06 0.15 0.91 16 7 O -0.17 -3.08 18.94 -29.46 -0.56 -3.64 16 8 O -0.18 -3.52 16.74 -29.46 -0.49 -4.01 16 9 C 0.29 4.71 6.61 -83.79 -0.55 4.16 16 10 N -0.70 -12.93 4.91 -58.63 -0.29 -13.21 16 11 C 0.12 2.40 3.78 -4.04 -0.02 2.39 16 12 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 13 C -0.13 -3.15 8.08 37.16 0.30 -2.85 16 14 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 15 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 16 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -23.46 9.35 55.43 0.52 -22.94 16 19 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.20 -2.72 8.97 -39.38 -0.35 -3.08 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.14 1.48 8.01 -52.49 -0.42 1.06 16 29 H 0.41 8.17 3.76 -40.82 -0.15 8.02 16 30 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 32 H 0.01 0.33 6.86 -51.93 -0.36 -0.02 16 33 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 37 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 38 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 39 H 0.14 1.85 6.74 -52.49 -0.35 1.49 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -27.38 320.96 -8.33 -35.71 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.17 Total: 6.34 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.31 Total: -19.16 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.38 Total: -35.24 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -1.05 Total: -7.65 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.38 -8.33 -35.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413413300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.077 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds