Wall clock time and date at job start Mon Mar 30 2020 23:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38308 * 119.95963 * 2 1 4 4 C 1.38263 * 120.14847 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.07570 * 0.02562 * 4 3 2 6 6 N 1.48006 * 120.03705 * 179.97438 * 5 4 3 7 7 O 1.21794 * 119.99950 * 37.25296 * 6 5 4 8 8 O 1.21804 * 119.99637 * 217.25380 * 6 5 4 9 9 C 1.38890 * 119.92116 * 359.97438 * 5 4 3 10 10 N 1.39672 * 120.07081 * 180.02562 * 9 5 4 11 11 C 1.46503 * 120.00109 * 185.95700 * 10 9 5 12 12 C 1.52997 * 109.47387 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47225 * 300.00547 * 12 11 10 14 14 C 1.53000 * 109.46833 * 60.00590 * 12 11 10 15 15 C 1.50701 * 109.47021 * 180.02562 * 12 11 10 16 16 H 1.07995 * 120.00058 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99864 * 180.02562 * 15 12 11 18 18 N 1.31518 * 120.00187 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00154 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47037 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47165 * 119.99758 * 19 17 15 22 22 H 1.48498 * 109.47428 * 239.99850 * 19 17 15 23 23 C 1.38080 * 119.96268 * 180.25660 * 2 1 3 24 24 H 1.09002 * 109.46796 * 89.99841 * 1 2 3 25 25 H 1.08995 * 109.47050 * 209.99535 * 1 2 3 26 26 H 1.08994 * 109.47036 * 329.99892 * 1 2 3 27 27 H 1.07999 * 119.93001 * 359.95188 * 3 2 1 28 28 H 1.08002 * 119.96459 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00248 * 5.96564 * 10 9 5 30 30 H 1.09006 * 109.46722 * 60.00350 * 11 10 9 31 31 H 1.08997 * 109.47183 * 300.01245 * 11 10 9 32 32 H 1.09004 * 109.47287 * 59.99929 * 13 12 11 33 33 H 1.09002 * 109.46892 * 179.97438 * 13 12 11 34 34 H 1.08997 * 109.46966 * 299.99210 * 13 12 11 35 35 H 1.09000 * 109.47576 * 59.99710 * 14 12 11 36 36 H 1.09002 * 109.47336 * 179.97438 * 14 12 11 37 37 H 1.09004 * 109.47090 * 299.99711 * 14 12 11 38 38 H 0.97000 * 120.00524 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.03998 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0005 6 7 5.7566 0.0157 0.0005 7 8 6.3622 0.8576 0.6390 8 8 6.3689 -0.8216 -0.6380 9 6 3.5860 -1.1953 0.0005 10 7 4.2868 -2.4035 0.0011 11 6 3.5628 -3.6703 -0.1306 12 6 4.5580 -4.8320 -0.1003 13 6 5.5468 -4.6869 -1.2587 14 6 5.3203 -4.8159 1.2261 15 6 3.8132 -6.1351 -0.2364 16 1 2.7378 -6.1346 -0.3350 17 6 4.5049 -7.3278 -0.2349 18 7 5.8146 -7.3283 -0.1152 19 14 3.5819 -8.9430 -0.4043 20 1 2.1269 -8.6713 -0.5248 21 1 4.0536 -9.6578 -1.6174 22 1 3.8314 -9.7838 0.7941 23 6 2.1967 -1.1962 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5138 27 1 1.6560 2.1325 -0.0008 28 1 4.1167 2.1403 0.0001 29 1 5.2528 -2.4038 0.0888 30 1 3.0193 -3.6816 -1.0754 31 1 2.8586 -3.7738 0.6949 32 1 6.0855 -3.7443 -1.1607 33 1 6.2560 -5.5143 -1.2368 34 1 5.0036 -4.6984 -2.2036 35 1 4.6159 -4.9193 2.0515 36 1 6.0290 -5.6438 1.2480 37 1 5.8591 -3.8734 1.3242 38 1 6.3013 -8.1674 -0.1146 39 1 1.6567 -2.1315 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413413300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:56 Heat of formation + Delta-G solvation = -3.710627 kcal Electronic energy + Delta-G solvation = -21990.575333 eV Core-core repulsion = 18707.370175 eV Total energy + Delta-G solvation = -3283.205157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23104 -40.75395 -38.73305 -37.60211 -35.90852 -34.08643 -33.08524 -30.30957 -29.43578 -27.68154 -27.59204 -26.77461 -25.68291 -23.32789 -22.59899 -20.63114 -20.18915 -19.76469 -18.79636 -18.11119 -17.43789 -16.91624 -16.48844 -15.77786 -15.64152 -15.37090 -15.18418 -14.67434 -14.67131 -14.16436 -13.69073 -13.24219 -13.18416 -13.17049 -12.97674 -12.76990 -12.70020 -12.58326 -12.38489 -12.36828 -12.27077 -12.13743 -12.05609 -11.64758 -11.26105 -11.10484 -10.76020 -10.42863 -10.19092 -8.76300 -8.03763 -6.21917 -0.95603 0.22068 0.35118 0.53801 1.42522 1.46111 1.55139 2.20706 2.44115 2.47086 3.20379 3.41072 3.71735 3.98834 4.02137 4.18748 4.28445 4.41741 4.53402 4.59144 4.67932 4.81622 4.87561 4.90427 4.96212 4.97207 5.05019 5.10723 5.21226 5.30703 5.35899 5.45072 5.56227 5.62973 5.65912 5.97666 6.00822 6.13464 6.33300 6.41620 6.53581 6.84822 7.47043 8.96112 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.005022 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.485421 B = 5574.097925 C = 6706.957667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.020 3.980 3 C -0.170 4.170 4 C -0.016 4.016 5 C -0.160 4.160 6 N 0.045 4.955 7 O -0.163 6.163 8 O -0.233 6.233 9 C 0.268 3.732 10 N -0.721 5.721 11 C 0.143 3.857 12 C 0.051 3.949 13 C -0.122 4.122 14 C -0.121 4.121 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.022 3.978 18 N -0.906 5.906 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.213 4.213 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.179 0.821 28 H 0.159 0.841 29 H 0.402 0.598 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.011 0.989 38 H 0.259 0.741 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 15.995 0.506 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.019 3.981 3 C -0.190 4.190 4 C -0.035 4.035 5 C -0.250 4.250 6 N 0.554 4.446 7 O -0.384 6.384 8 O -0.431 6.431 9 C 0.154 3.846 10 N -0.347 5.347 11 C 0.020 3.980 12 C 0.050 3.950 13 C -0.180 4.180 14 C -0.179 4.179 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.178 4.178 18 N -0.544 5.544 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.236 4.236 24 H 0.113 0.887 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.196 0.804 28 H 0.176 0.824 29 H 0.241 0.759 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.445 15.529 0.423 19.905 hybrid contribution 1.249 -1.317 -0.057 1.816 sum -11.196 14.212 0.367 18.096 Atomic orbital electron populations 1.21047 0.87299 1.04969 1.04403 1.20475 0.98518 0.91348 0.87792 1.21180 0.91203 0.99763 1.06883 1.20975 0.95597 0.94835 0.92121 1.20762 0.76594 0.97155 1.30515 1.43872 1.04789 0.98714 0.97235 1.94430 1.70749 1.32729 1.40453 1.94528 1.70388 1.34662 1.43506 1.17956 0.92962 0.84001 0.89648 1.45796 1.10414 1.03701 1.74831 1.21620 0.95087 0.81183 1.00141 1.18341 0.92294 0.91892 0.92444 1.21681 0.99836 0.98899 0.97563 1.21682 0.99868 0.98673 0.97628 1.21265 0.93487 0.90806 1.50472 0.92139 1.25599 0.95525 1.01969 0.94682 1.69970 1.07214 1.26816 1.50421 0.85584 0.79237 0.80002 0.77235 1.18898 1.21187 1.21120 1.20854 0.89301 1.00990 1.12468 0.88657 0.90434 0.88356 0.80361 0.82377 0.75904 0.92122 0.91936 0.96173 0.92160 0.95668 0.95397 0.91968 0.96964 0.93154 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.01 71.24 0.71 -0.47 16 2 C 0.02 0.35 5.88 -19.88 -0.12 0.24 16 3 C -0.17 -2.70 9.70 22.29 0.22 -2.49 16 4 C -0.02 -0.35 9.66 22.25 0.21 -0.14 16 5 C -0.16 -4.97 6.52 36.51 0.24 -4.74 16 6 N 0.04 1.65 4.29 -46.16 -0.20 1.45 16 7 O -0.16 -5.81 18.94 18.89 0.36 -5.46 16 8 O -0.23 -9.66 16.74 18.88 0.32 -9.34 16 9 C 0.27 8.53 6.61 38.21 0.25 8.79 16 10 N -0.72 -26.95 4.91 -339.41 -1.67 -28.61 16 11 C 0.14 5.55 3.78 86.38 0.33 5.88 16 12 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 13 C -0.12 -5.93 8.08 71.98 0.58 -5.35 16 14 C -0.12 -5.78 8.08 71.98 0.58 -5.20 16 15 C -0.52 -26.53 8.01 25.60 0.21 -26.32 16 16 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 17 C 0.02 1.13 5.15 84.65 0.44 1.57 16 18 N -0.91 -49.58 9.35 21.45 0.20 -49.38 16 19 Si 0.95 41.62 29.54 68.60 2.03 43.65 16 20 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 21 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 23 C -0.21 -5.30 8.97 22.40 0.20 -5.10 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 26 H 0.10 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.16 2.85 8.01 -2.91 -0.02 2.82 16 29 H 0.40 16.60 3.76 -92.71 -0.35 16.25 16 30 H 0.06 2.29 8.13 -2.38 -0.02 2.27 16 31 H 0.06 2.31 7.73 -2.39 -0.02 2.29 16 32 H 0.02 0.92 6.86 -2.38 -0.02 0.90 16 33 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 34 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 37 H 0.01 0.53 6.86 -2.38 -0.02 0.51 16 38 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 39 H 0.15 3.51 6.74 -2.91 -0.02 3.49 16 Total: -1.00 -61.44 320.96 5.57 -55.86 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.72 Total: 22.80 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 3.82 Total: -30.97 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -1.66 Total: -76.54 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.67 Total: -14.80 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -61.44 5.57 -55.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413413300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.151 kcal (2) G-P(sol) polarization free energy of solvation -61.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds