Wall clock time and date at job start Mon Mar 30 2020 23:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38135 * 120.04216 * 2 1 4 4 C 1.38264 * 120.07367 * 180.27770 * 3 2 1 5 5 C 1.38303 * 120.15051 * 359.72098 * 4 3 2 6 6 C 1.38075 * 120.07885 * 359.97438 * 5 4 3 7 7 N 1.48002 * 120.03846 * 180.02562 * 6 5 4 8 8 O 1.21792 * 120.00031 * 4.74244 * 7 6 5 9 9 O 1.21806 * 119.99973 * 184.73952 * 7 6 5 10 10 C 1.38895 * 120.03797 * 179.72331 * 2 1 3 11 11 N 1.39670 * 120.07517 * 359.97438 * 10 2 1 12 12 C 1.46899 * 111.00157 * 277.60837 * 11 10 2 13 13 C 1.52997 * 109.47497 * 179.09577 * 12 11 10 14 14 C 1.52998 * 109.46876 * 299.99944 * 13 12 11 15 15 C 1.53004 * 109.47204 * 59.99591 * 13 12 11 16 16 C 1.50700 * 109.47342 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00227 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99881 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99856 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99822 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46722 * 90.00527 * 20 18 16 22 22 H 1.48490 * 109.46978 * 210.00381 * 20 18 16 23 23 H 1.48505 * 109.46941 * 330.00535 * 20 18 16 24 24 H 1.08991 * 109.46939 * 270.28089 * 1 2 3 25 25 H 1.09003 * 109.46734 * 30.27705 * 1 2 3 26 26 H 1.08994 * 109.46818 * 150.27694 * 1 2 3 27 27 H 1.07994 * 119.95764 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.91895 * 179.70153 * 4 3 2 29 29 H 1.08006 * 119.96093 * 180.02562 * 5 4 3 30 30 H 1.00904 * 110.99855 * 41.55603 * 11 10 2 31 31 H 1.09003 * 109.46970 * 299.09887 * 12 11 10 32 32 H 1.09008 * 109.47252 * 59.09121 * 12 11 10 33 33 H 1.08993 * 109.47519 * 59.99988 * 14 13 12 34 34 H 1.09006 * 109.46875 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47009 * 299.99381 * 14 13 12 36 36 H 1.09003 * 109.46571 * 60.00114 * 15 13 12 37 37 H 1.08996 * 109.47130 * 180.02562 * 15 13 12 38 38 H 1.08997 * 109.46812 * 300.00361 * 15 13 12 39 39 H 0.96999 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5812 1.1965 -0.0058 5 6 4.2765 0.0010 -0.0058 6 6 3.5916 -1.1979 0.0005 7 7 4.3366 -2.4767 0.0011 8 8 5.5517 -2.4736 0.0832 9 8 3.7344 -3.5324 -0.0805 10 6 2.2023 -1.2024 0.0058 11 7 1.5063 -2.4133 0.0122 12 6 1.0871 -2.7724 1.3735 13 6 0.3101 -4.0900 1.3371 14 6 -0.9251 -3.9292 0.4488 15 6 1.2051 -5.1943 0.7710 16 6 -0.1194 -4.4586 2.7338 17 1 0.1358 -3.8172 3.5643 18 6 -0.8391 -5.6144 2.9512 19 7 -1.1504 -6.3953 1.9398 20 14 -1.3709 -6.0718 4.6825 21 1 -2.7055 -5.4835 4.9620 22 1 -1.4465 -7.5499 4.8028 23 1 -0.3835 -5.5454 5.6589 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8924 -0.5095 27 1 1.6586 2.1310 -0.0004 28 1 4.1193 2.1329 -0.0107 29 1 5.3565 0.0052 -0.0099 30 1 0.7147 -2.3787 -0.6126 31 1 1.9671 -2.8869 2.0064 32 1 0.4495 -1.9856 1.7768 33 1 -0.6142 -3.6627 -0.5613 34 1 -1.4784 -4.8680 0.4225 35 1 -1.5628 -3.1424 0.8522 36 1 2.0852 -5.3088 1.4039 37 1 0.6514 -6.1328 0.7447 38 1 1.5161 -4.9278 -0.2391 39 1 -1.6564 -7.2085 2.0928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:00 Heat of formation + Delta-G solvation = 26.628298 kcal Electronic energy + Delta-G solvation = -22549.340618 eV Core-core repulsion = 19267.451055 eV Total energy + Delta-G solvation = -3281.889563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68547 -39.87914 -36.98970 -35.85495 -34.27952 -33.00947 -31.34422 -29.52767 -27.19813 -26.07197 -25.61403 -25.18337 -24.15344 -21.76770 -21.51489 -18.62175 -18.45031 -18.04339 -17.23704 -16.86878 -15.94746 -15.71015 -15.10287 -14.58936 -14.32783 -13.91317 -13.68787 -12.98577 -12.88353 -12.61194 -12.36507 -12.20836 -12.03728 -11.64347 -11.22481 -11.06284 -10.93758 -10.81195 -10.64528 -10.49951 -10.48611 -10.22648 -10.03014 -9.55357 -9.38553 -9.33256 -8.89512 -8.66880 -8.29971 -8.04512 -5.92531 -4.03373 0.15129 0.89530 1.69753 1.89293 3.24927 3.30352 3.38239 3.41180 4.08744 4.39687 4.46251 4.51166 4.78865 4.87111 5.02251 5.31306 5.33243 5.39671 5.45802 5.66625 5.84634 5.87144 6.05036 6.11173 6.17902 6.32491 6.58316 6.78075 6.86822 7.00510 7.12515 7.30998 7.49502 7.60901 7.69345 7.75495 7.84754 8.18446 8.24421 8.36734 8.52963 8.96873 9.61632 11.07866 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005536 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.234475 B = 5056.877831 C = 5676.717162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.130 4.130 3 C -0.063 4.063 4 C -0.136 4.136 5 C -0.059 4.059 6 C -0.037 4.037 7 N 0.025 4.975 8 O -0.221 6.221 9 O -0.075 6.075 10 C 0.180 3.820 11 N -0.636 5.636 12 C 0.089 3.911 13 C 0.072 3.928 14 C -0.134 4.134 15 C -0.117 4.117 16 C -0.509 4.509 17 H 0.050 0.950 18 C 0.068 3.932 19 N -0.881 5.881 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.357 0.643 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.009 0.991 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.072 0.928 38 H 0.027 0.973 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 15.494 -5.553 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.082 4.082 4 C -0.155 4.155 5 C -0.078 4.078 6 C -0.122 4.122 7 N 0.546 4.454 8 O -0.418 6.418 9 O -0.311 6.311 10 C 0.080 3.920 11 N -0.268 5.268 12 C -0.035 4.035 13 C 0.071 3.929 14 C -0.192 4.192 15 C -0.175 4.175 16 C -0.548 4.548 17 H 0.069 0.931 18 C -0.133 4.133 19 N -0.520 5.520 20 Si 0.717 3.283 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.100 0.900 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.106 0.894 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.559 15.567 -5.545 17.142 hybrid contribution -0.726 0.118 1.128 1.347 sum 3.833 15.685 -4.417 16.740 Atomic orbital electron populations 1.20824 0.89450 1.03505 1.03581 1.20684 0.97494 0.92445 1.02682 1.21326 0.94239 0.97882 0.94781 1.21037 0.94113 0.97377 1.02948 1.20943 1.01639 0.89977 0.95275 1.21144 0.91145 0.84511 1.15440 1.43404 1.00683 1.02923 0.98357 1.94470 0.96342 1.94135 1.56892 1.94712 1.69932 1.18203 1.48253 1.18667 0.90614 0.91093 0.91621 1.58216 1.31102 1.24487 1.12981 1.22297 0.98224 0.99291 0.83699 1.18119 0.90906 0.88751 0.95082 1.21878 0.99778 1.02468 0.95059 1.21610 0.97581 1.01060 0.97224 1.21022 1.34477 1.07014 0.92245 0.93130 1.24846 0.95820 0.96147 0.96505 1.69829 1.39108 1.13414 1.29604 0.86660 0.78785 0.77646 0.85248 1.20910 1.21198 1.20108 0.90046 0.90785 0.90754 0.84641 0.84165 0.83406 0.81675 0.92463 0.95747 0.97201 0.89447 0.96137 0.95835 0.90961 0.95362 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 8.97 36.00 0.32 -0.92 16 2 C -0.13 -1.58 5.85 -104.42 -0.61 -2.19 16 3 C -0.06 -0.60 9.70 -39.61 -0.38 -0.99 16 4 C -0.14 -1.27 10.04 -39.55 -0.40 -1.67 16 5 C -0.06 -0.72 9.55 -39.62 -0.38 -1.10 16 6 C -0.04 -0.59 6.86 -79.76 -0.55 -1.14 16 7 N 0.03 0.48 4.45 34.06 0.15 0.63 16 8 O -0.22 -4.18 18.46 -29.46 -0.54 -4.72 16 9 O -0.08 -1.58 16.29 -29.46 -0.48 -2.06 16 10 C 0.18 2.78 5.27 -83.79 -0.44 2.34 16 11 N -0.64 -11.18 3.39 -58.35 -0.20 -11.38 16 12 C 0.09 1.81 4.22 -3.83 -0.02 1.80 16 13 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 14 C -0.13 -2.98 7.92 37.16 0.29 -2.69 16 15 C -0.12 -2.87 7.75 37.16 0.29 -2.58 16 16 C -0.51 -13.45 8.01 -34.44 -0.28 -13.72 16 17 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 18 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 19 N -0.88 -24.02 9.35 55.43 0.52 -23.51 16 20 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.08 0.91 7.83 -51.93 -0.41 0.50 16 25 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 27 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 29 H 0.15 1.60 7.62 -52.48 -0.40 1.20 16 30 H 0.36 5.88 4.91 -39.29 -0.19 5.69 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.47 7.10 -51.92 -0.37 0.11 16 33 H 0.01 0.18 6.55 -51.93 -0.34 -0.16 16 34 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.94 6.07 -51.93 -0.32 1.62 16 38 H 0.03 0.64 7.24 -51.93 -0.38 0.27 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -29.19 317.09 -8.24 -37.43 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.12 Total: 2.43 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.33 Total: -19.53 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.47 Total: -34.26 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -1.02 Total: -6.78 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.19 -8.24 -37.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.061 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds