Wall clock time and date at job start Mon Mar 30 2020 23:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38135 * 120.04216 * 2 1 4 4 C 1.38264 * 120.07367 * 180.27770 * 3 2 1 5 5 C 1.38303 * 120.15051 * 359.72098 * 4 3 2 6 6 C 1.38075 * 120.07885 * 359.97438 * 5 4 3 7 7 N 1.48002 * 120.03846 * 180.02562 * 6 5 4 8 8 O 1.21792 * 120.00031 * 4.74244 * 7 6 5 9 9 O 1.21806 * 119.99973 * 184.73952 * 7 6 5 10 10 C 1.38895 * 120.03797 * 179.72331 * 2 1 3 11 11 N 1.39670 * 120.07517 * 359.97438 * 10 2 1 12 12 C 1.46899 * 111.00157 * 277.60837 * 11 10 2 13 13 C 1.52997 * 109.47497 * 179.09577 * 12 11 10 14 14 C 1.52998 * 109.46876 * 299.99944 * 13 12 11 15 15 C 1.53004 * 109.47204 * 59.99591 * 13 12 11 16 16 C 1.50700 * 109.47342 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00227 * 0.02562 * 16 13 12 18 18 C 1.37882 * 119.99881 * 179.97438 * 16 13 12 19 19 N 1.31510 * 119.99856 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99822 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46722 * 90.00527 * 20 18 16 22 22 H 1.48490 * 109.46978 * 210.00381 * 20 18 16 23 23 H 1.48505 * 109.46941 * 330.00535 * 20 18 16 24 24 H 1.08991 * 109.46939 * 270.28089 * 1 2 3 25 25 H 1.09003 * 109.46734 * 30.27705 * 1 2 3 26 26 H 1.08994 * 109.46818 * 150.27694 * 1 2 3 27 27 H 1.07994 * 119.95764 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.91895 * 179.70153 * 4 3 2 29 29 H 1.08006 * 119.96093 * 180.02562 * 5 4 3 30 30 H 1.00904 * 110.99855 * 41.55603 * 11 10 2 31 31 H 1.09003 * 109.46970 * 299.09887 * 12 11 10 32 32 H 1.09008 * 109.47252 * 59.09121 * 12 11 10 33 33 H 1.08993 * 109.47519 * 59.99988 * 14 13 12 34 34 H 1.09006 * 109.46875 * 179.97438 * 14 13 12 35 35 H 1.09003 * 109.47009 * 299.99381 * 14 13 12 36 36 H 1.09003 * 109.46571 * 60.00114 * 15 13 12 37 37 H 1.08996 * 109.47130 * 180.02562 * 15 13 12 38 38 H 1.08997 * 109.46812 * 300.00361 * 15 13 12 39 39 H 0.96999 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1958 0.0000 4 6 3.5812 1.1965 -0.0058 5 6 4.2765 0.0010 -0.0058 6 6 3.5916 -1.1979 0.0005 7 7 4.3366 -2.4767 0.0011 8 8 5.5517 -2.4736 0.0832 9 8 3.7344 -3.5324 -0.0805 10 6 2.2023 -1.2024 0.0058 11 7 1.5063 -2.4133 0.0122 12 6 1.0871 -2.7724 1.3735 13 6 0.3101 -4.0900 1.3371 14 6 -0.9251 -3.9292 0.4488 15 6 1.2051 -5.1943 0.7710 16 6 -0.1194 -4.4586 2.7338 17 1 0.1358 -3.8172 3.5643 18 6 -0.8391 -5.6144 2.9512 19 7 -1.1504 -6.3953 1.9398 20 14 -1.3709 -6.0718 4.6825 21 1 -2.7055 -5.4835 4.9620 22 1 -1.4465 -7.5499 4.8028 23 1 -0.3835 -5.5454 5.6589 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8875 -0.5182 26 1 -0.3633 -0.8924 -0.5095 27 1 1.6586 2.1310 -0.0004 28 1 4.1193 2.1329 -0.0107 29 1 5.3565 0.0052 -0.0099 30 1 0.7147 -2.3787 -0.6126 31 1 1.9671 -2.8869 2.0064 32 1 0.4495 -1.9856 1.7768 33 1 -0.6142 -3.6627 -0.5613 34 1 -1.4784 -4.8680 0.4225 35 1 -1.5628 -3.1424 0.8522 36 1 2.0852 -5.3088 1.4039 37 1 0.6514 -6.1328 0.7447 38 1 1.5161 -4.9278 -0.2391 39 1 -1.6564 -7.2085 2.0928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413415282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:59 Heat of formation + Delta-G solvation = 11.493014 kcal Electronic energy + Delta-G solvation = -22549.996934 eV Core-core repulsion = 19267.451055 eV Total energy + Delta-G solvation = -3282.545878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.01203 -40.98793 -38.50916 -37.32064 -35.77747 -34.01997 -33.11711 -30.79087 -28.18089 -27.50715 -27.36058 -27.18659 -25.75387 -22.92498 -22.52597 -20.46582 -19.64678 -19.39465 -18.53528 -18.22830 -17.66260 -16.85439 -16.71776 -15.85848 -15.67494 -15.04197 -14.93821 -14.50091 -14.36371 -13.90319 -13.58430 -13.26162 -13.13132 -13.08051 -13.01142 -12.60186 -12.57485 -12.47868 -12.39361 -12.18453 -12.05803 -11.98836 -11.94306 -11.32022 -11.16200 -10.63105 -10.39127 -10.33433 -10.07866 -9.34151 -7.96656 -6.13880 -1.05603 -0.03166 0.47131 0.67334 1.41166 1.44358 1.52157 2.31099 2.46245 2.93414 3.25592 3.46088 3.73660 3.97786 3.99858 4.02438 4.33097 4.42844 4.46884 4.59043 4.67637 4.80562 4.85307 4.97077 5.05131 5.11019 5.16369 5.19843 5.25759 5.38237 5.48210 5.52827 5.66558 5.70555 5.80609 5.99177 6.23660 6.31119 6.38283 6.50690 6.76831 6.93763 7.53396 9.01511 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021316 B = 0.005536 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.234475 B = 5056.877831 C = 5676.717162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.130 4.130 3 C -0.044 4.044 4 C -0.113 4.113 5 C -0.063 4.063 6 C -0.064 4.064 7 N 0.029 4.971 8 O -0.215 6.215 9 O -0.146 6.146 10 C 0.148 3.852 11 N -0.643 5.643 12 C 0.113 3.887 13 C 0.065 3.935 14 C -0.120 4.120 15 C -0.098 4.098 16 C -0.528 4.528 17 H 0.042 0.958 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.944 3.056 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.278 1.278 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.182 0.818 28 H 0.188 0.812 29 H 0.160 0.840 30 H 0.361 0.639 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.001 0.999 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 19.557 -5.713 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.134 4.134 3 C -0.062 4.062 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.149 4.149 7 N 0.543 4.457 8 O -0.419 6.419 9 O -0.366 6.366 10 C 0.049 3.951 11 N -0.275 5.275 12 C -0.012 4.012 13 C 0.064 3.936 14 C -0.178 4.178 15 C -0.156 4.156 16 C -0.566 4.566 17 H 0.060 0.940 18 C -0.174 4.174 19 N -0.539 5.539 20 Si 0.770 3.230 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.094 0.906 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.200 0.800 28 H 0.205 0.795 29 H 0.178 0.822 30 H 0.187 0.813 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.020 0.980 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.276 19.560 -5.723 20.824 hybrid contribution -0.547 -0.904 1.148 1.560 sum 3.729 18.657 -4.575 19.568 Atomic orbital electron populations 1.20884 0.88437 1.04559 1.03518 1.20900 0.98286 0.92078 1.02087 1.21893 0.94527 0.98418 0.91387 1.21620 0.94260 0.97739 0.99479 1.21324 1.02509 0.89564 0.94869 1.21498 0.91456 0.83607 1.18380 1.43909 1.00649 1.03977 0.97209 1.94405 0.97238 1.94505 1.55726 1.94711 1.69967 1.20065 1.51898 1.18806 0.90447 0.91395 0.94444 1.57888 1.31219 1.27124 1.11319 1.21760 0.96391 0.97792 0.85267 1.18119 0.91559 0.89949 0.93968 1.21662 0.98799 1.01141 0.96197 1.21400 0.96444 1.00492 0.97266 1.21336 1.34600 1.07234 0.93472 0.93961 1.25489 0.96038 0.96213 0.99614 1.69964 1.39389 1.13511 1.30993 0.85791 0.78559 0.77179 0.81439 1.19950 1.21182 1.20270 0.90598 0.87285 0.92183 0.80045 0.79472 0.82227 0.81311 0.95412 0.94998 0.94884 0.92372 0.95304 0.98005 0.93471 0.94629 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.97 71.24 0.64 -1.50 16 2 C -0.13 -2.75 5.85 -19.73 -0.12 -2.87 16 3 C -0.04 -0.58 9.70 22.25 0.22 -0.37 16 4 C -0.11 -1.47 10.04 22.29 0.22 -1.25 16 5 C -0.06 -1.36 9.55 22.25 0.21 -1.15 16 6 C -0.06 -2.00 6.86 36.51 0.25 -1.75 16 7 N 0.03 1.15 4.45 -46.17 -0.21 0.94 16 8 O -0.21 -8.29 18.46 18.90 0.35 -7.94 16 9 O -0.15 -6.55 16.29 18.88 0.31 -6.24 16 10 C 0.15 4.47 5.27 38.22 0.20 4.67 16 11 N -0.64 -23.07 3.39 -338.54 -1.15 -24.22 16 12 C 0.11 4.75 4.22 86.30 0.36 5.11 16 13 C 0.06 3.14 0.57 -52.93 -0.03 3.11 16 14 C -0.12 -5.42 7.92 71.98 0.57 -4.85 16 15 C -0.10 -5.09 7.75 71.98 0.56 -4.53 16 16 C -0.53 -28.66 8.01 25.60 0.21 -28.46 16 17 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 18 C 0.03 1.42 5.15 84.66 0.44 1.85 16 19 N -0.90 -50.42 9.35 21.45 0.20 -50.22 16 20 Si 0.94 43.62 29.54 68.60 2.03 45.64 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 24 H 0.08 1.49 7.83 -2.39 -0.02 1.47 16 25 H 0.11 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.06 1.28 6.36 -2.39 -0.02 1.26 16 27 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 28 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 29 H 0.16 3.01 7.62 -2.91 -0.02 2.98 16 30 H 0.36 11.96 4.91 -89.69 -0.44 11.52 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.03 1.25 7.10 -2.38 -0.02 1.24 16 33 H 0.03 1.29 6.55 -2.39 -0.02 1.28 16 34 H 0.06 2.99 6.07 -2.38 -0.01 2.97 16 35 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.05 2.65 6.07 -2.39 -0.01 2.64 16 38 H 0.03 1.73 7.24 -2.39 -0.02 1.71 16 39 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -68.11 317.09 5.89 -62.22 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.63 Total: 11.80 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.73 Total: -31.98 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.15 Total: -73.50 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.66 Total: -14.18 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.11 5.89 -62.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.713 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds