Wall clock time and date at job start Mon Mar 30 2020 23:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38126 * 119.96022 * 2 1 4 4 C 1.38895 * 119.91957 * 180.25476 * 3 2 1 5 5 N 1.39673 * 120.07212 * 179.72578 * 4 3 2 6 6 C 1.46500 * 119.99715 * 179.72335 * 5 4 3 7 7 C 1.53000 * 109.46887 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47208 * 300.00162 * 7 6 5 9 9 C 1.53002 * 109.47158 * 60.00621 * 7 6 5 10 10 C 1.50704 * 109.47088 * 180.02562 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00103 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99951 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 120.00143 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47050 * 90.00192 * 14 12 10 16 16 H 1.48494 * 109.47074 * 210.00429 * 14 12 10 17 17 H 1.48502 * 109.46733 * 330.00213 * 14 12 10 18 18 C 1.38937 * 119.85109 * 359.44909 * 4 3 2 19 19 C 1.38079 * 119.92310 * 0.27554 * 18 4 3 20 20 C 1.38264 * 119.96232 * 179.70581 * 2 1 3 21 21 N 1.48007 * 119.92343 * 0.04065 * 20 2 1 22 22 O 1.21799 * 119.99699 * 173.55394 * 21 20 2 23 23 O 1.21804 * 120.00169 * 353.55381 * 21 20 2 24 24 H 1.08999 * 109.47262 * 263.39427 * 1 2 3 25 25 H 1.09004 * 109.47266 * 23.39363 * 1 2 3 26 26 H 1.09001 * 109.47177 * 143.39180 * 1 2 3 27 27 H 1.07994 * 120.04061 * 359.97438 * 3 2 1 28 28 H 0.96994 * 120.00091 * 359.72455 * 5 4 3 29 29 H 1.09004 * 109.47066 * 60.00081 * 6 5 4 30 30 H 1.08998 * 109.47492 * 300.00218 * 6 5 4 31 31 H 1.08992 * 109.47235 * 60.00241 * 8 7 6 32 32 H 1.09003 * 109.47026 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47162 * 300.00006 * 8 7 6 34 34 H 1.08990 * 109.47295 * 59.99655 * 9 7 6 35 35 H 1.08993 * 109.46949 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.46706 * 299.99262 * 9 7 6 37 37 H 0.96998 * 119.99936 * 179.97438 * 13 12 10 38 38 H 1.07994 * 120.03457 * 180.30195 * 18 4 3 39 39 H 1.08003 * 119.95892 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1967 0.0000 4 6 3.5858 1.1957 -0.0054 5 7 4.2865 2.4039 -0.0112 6 6 5.7515 2.4010 -0.0107 7 6 6.2643 3.8425 -0.0183 8 6 5.7561 4.5580 -1.2716 9 6 5.7555 4.5715 1.2269 10 6 7.7713 3.8395 -0.0185 11 1 8.3095 2.9031 -0.0140 12 6 8.4631 5.0322 -0.0254 13 7 7.8077 6.1724 -0.0313 14 14 10.3311 5.0285 -0.0263 15 1 10.8254 5.0199 -1.4266 16 1 10.8288 6.2438 0.6669 17 1 10.8240 3.8189 0.6802 18 6 4.2765 -0.0098 0.0009 19 6 3.5806 -1.2024 0.0066 20 6 2.1976 -1.1978 0.0062 21 7 1.4550 -2.4781 0.0118 22 8 2.0562 -3.5313 -0.1012 23 8 0.2426 -2.4785 0.1295 24 1 -0.3634 -0.1182 1.0208 25 1 -0.3634 0.9432 -0.4080 26 1 -0.3633 -0.8249 -0.6128 27 1 1.6569 2.1320 -0.0004 28 1 3.8032 3.2449 -0.0155 29 1 6.1141 1.8820 -0.8980 30 1 6.1136 1.8909 0.8819 31 1 4.6662 4.5602 -1.2720 32 1 6.1211 5.5851 -1.2768 33 1 6.1187 4.0386 -2.1587 34 1 6.1175 4.0618 2.1196 35 1 6.1204 5.5985 1.2212 36 1 4.6654 4.5737 1.2265 37 1 8.2944 7.0115 -0.0358 38 1 5.3564 -0.0140 0.0017 39 1 4.1169 -2.1398 0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413415828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:50 Heat of formation + Delta-G solvation = 10.007816 kcal Electronic energy + Delta-G solvation = -21343.143227 eV Core-core repulsion = 18060.532946 eV Total energy + Delta-G solvation = -3282.610281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95745 -39.72026 -37.24223 -36.39822 -34.56119 -32.60641 -31.66328 -29.71917 -27.84769 -25.93306 -25.76686 -25.39796 -24.53963 -22.57747 -21.28371 -19.08787 -18.74634 -18.19731 -17.47541 -17.29620 -15.98874 -15.72468 -14.86049 -14.65095 -14.40083 -14.01335 -13.64993 -13.40037 -13.37999 -12.82968 -12.67220 -12.47384 -12.40231 -11.66854 -11.45226 -11.24787 -11.16230 -11.10434 -10.92924 -10.83346 -10.68172 -10.49470 -10.35013 -10.23257 -9.75349 -9.58585 -9.10481 -9.00721 -8.55988 -7.62600 -6.19344 -4.31150 0.22648 1.10945 1.68299 1.77457 3.16468 3.24590 3.26092 3.47361 3.47653 4.25291 4.46160 4.50341 4.96803 5.01409 5.07912 5.17790 5.39142 5.53508 5.60065 5.73578 5.84953 5.93441 5.93684 6.03793 6.12573 6.21423 6.32543 6.49775 6.61532 6.69406 6.76973 6.78024 7.06418 7.28752 7.34463 7.50832 7.68898 7.80394 7.94996 7.95083 8.18388 8.68866 9.36106 10.82038 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.003438 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.746973 B = 8141.813236 C = 8695.873635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.034 3.966 3 C -0.216 4.216 4 C 0.281 3.719 5 N -0.705 5.705 6 C 0.122 3.878 7 C 0.058 3.942 8 C -0.132 4.132 9 C -0.132 4.132 10 C -0.512 4.512 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.884 5.884 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.207 4.207 19 C 0.001 3.999 20 C -0.129 4.129 21 N 0.052 4.948 22 O -0.197 6.197 23 O -0.188 6.188 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.139 0.861 28 H 0.406 0.594 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.006 0.994 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.145 0.855 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 -6.991 0.047 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.032 3.968 3 C -0.240 4.240 4 C 0.166 3.834 5 N -0.326 5.326 6 C -0.001 4.001 7 C 0.058 3.942 8 C -0.190 4.190 9 C -0.190 4.190 10 C -0.551 4.551 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.522 5.522 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.231 4.231 19 C -0.020 4.020 20 C -0.217 4.217 21 N 0.560 4.440 22 O -0.405 6.405 23 O -0.397 6.397 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.114 0.886 27 H 0.157 0.843 28 H 0.243 0.757 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.106 0.894 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.163 0.837 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.925 -6.167 0.047 10.849 hybrid contribution 0.783 0.099 0.002 0.790 sum -8.142 -6.068 0.050 10.154 Atomic orbital electron populations 1.21273 0.89195 1.03988 1.04231 1.19420 0.97117 0.89983 0.90329 1.20433 0.91952 0.97528 1.14057 1.18334 0.91127 0.87579 0.86351 1.45701 1.08169 1.04750 1.73930 1.22013 0.75846 1.02021 1.00200 1.18336 0.95574 0.87330 0.93004 1.21847 0.95180 1.04492 0.97470 1.21844 0.95180 1.04485 0.97470 1.20922 0.89654 0.92747 1.51750 0.92392 1.24883 0.98531 0.95476 0.94506 1.69791 1.35112 0.97325 1.49926 0.86548 0.85317 0.77674 0.78220 1.20608 1.21150 1.19850 1.20674 1.00910 0.89595 1.11879 1.20660 0.90702 0.99708 0.90915 1.20485 0.92112 0.82498 1.26621 1.43487 1.00846 1.02873 0.96780 1.94490 1.70331 1.20522 1.55126 1.94409 0.96872 1.93957 1.54445 0.89676 0.91251 0.88571 0.84342 0.75656 0.92367 0.92365 0.97531 0.89430 0.95332 0.95326 0.89437 0.97526 0.92797 0.83749 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.67 36.01 0.31 -1.05 16 2 C 0.03 0.43 5.88 -104.65 -0.62 -0.18 16 3 C -0.22 -2.61 9.52 -39.38 -0.37 -2.99 16 4 C 0.28 3.77 6.65 -83.78 -0.56 3.21 16 5 N -0.70 -10.22 5.14 -58.63 -0.30 -10.52 16 6 C 0.12 2.08 3.74 -4.04 -0.02 2.07 16 7 C 0.06 1.20 0.50 -155.66 -0.08 1.13 16 8 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 9 C -0.13 -2.73 8.08 37.16 0.30 -2.43 16 10 C -0.51 -12.24 8.01 -34.44 -0.28 -12.52 16 11 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 12 C 0.07 1.68 5.15 -17.82 -0.09 1.58 16 13 N -0.88 -22.29 9.35 55.43 0.52 -21.77 16 14 Si 0.89 19.50 29.54 -169.99 -5.02 14.48 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.21 -2.70 9.31 -39.38 -0.37 -3.07 16 19 C 0.00 0.01 9.55 -39.62 -0.38 -0.37 16 20 C -0.13 -1.81 6.83 -79.92 -0.55 -2.35 16 21 N 0.05 0.80 4.45 33.98 0.15 0.95 16 22 O -0.20 -3.18 18.46 -29.46 -0.54 -3.72 16 23 O -0.19 -2.87 15.35 -29.46 -0.45 -3.32 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.58 8.04 -51.93 -0.42 0.17 16 26 H 0.10 1.09 5.86 -51.93 -0.30 0.78 16 27 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.41 5.70 6.18 -40.82 -0.25 5.45 16 29 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 30 H 0.06 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 32 H 0.09 2.05 6.07 -51.93 -0.32 1.74 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 2.05 6.07 -51.93 -0.32 1.73 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 37 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 38 H 0.14 1.78 6.73 -52.49 -0.35 1.43 16 39 H 0.15 1.67 7.62 -52.48 -0.40 1.27 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -25.28 318.30 -8.37 -33.64 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.13 Total: 4.86 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.39 Total: -19.40 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.37 Total: -31.33 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -1.00 Total: -7.05 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.28 -8.37 -33.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.650 kcal (2) G-P(sol) polarization free energy of solvation -25.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds