Wall clock time and date at job start Mon Mar 30 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38126 * 119.96022 * 2 1 4 4 C 1.38895 * 119.91957 * 180.25476 * 3 2 1 5 5 N 1.39673 * 120.07212 * 179.72578 * 4 3 2 6 6 C 1.46500 * 119.99715 * 179.72335 * 5 4 3 7 7 C 1.53000 * 109.46887 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47208 * 300.00162 * 7 6 5 9 9 C 1.53002 * 109.47158 * 60.00621 * 7 6 5 10 10 C 1.50704 * 109.47088 * 180.02562 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00103 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99951 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 120.00143 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47050 * 90.00192 * 14 12 10 16 16 H 1.48494 * 109.47074 * 210.00429 * 14 12 10 17 17 H 1.48502 * 109.46733 * 330.00213 * 14 12 10 18 18 C 1.38937 * 119.85109 * 359.44909 * 4 3 2 19 19 C 1.38079 * 119.92310 * 0.27554 * 18 4 3 20 20 C 1.38264 * 119.96232 * 179.70581 * 2 1 3 21 21 N 1.48007 * 119.92343 * 0.04065 * 20 2 1 22 22 O 1.21799 * 119.99699 * 173.55394 * 21 20 2 23 23 O 1.21804 * 120.00169 * 353.55381 * 21 20 2 24 24 H 1.08999 * 109.47262 * 263.39427 * 1 2 3 25 25 H 1.09004 * 109.47266 * 23.39363 * 1 2 3 26 26 H 1.09001 * 109.47177 * 143.39180 * 1 2 3 27 27 H 1.07994 * 120.04061 * 359.97438 * 3 2 1 28 28 H 0.96994 * 120.00091 * 359.72455 * 5 4 3 29 29 H 1.09004 * 109.47066 * 60.00081 * 6 5 4 30 30 H 1.08998 * 109.47492 * 300.00218 * 6 5 4 31 31 H 1.08992 * 109.47235 * 60.00241 * 8 7 6 32 32 H 1.09003 * 109.47026 * 179.97438 * 8 7 6 33 33 H 1.08995 * 109.47162 * 300.00006 * 8 7 6 34 34 H 1.08990 * 109.47295 * 59.99655 * 9 7 6 35 35 H 1.08993 * 109.46949 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.46706 * 299.99262 * 9 7 6 37 37 H 0.96998 * 119.99936 * 179.97438 * 13 12 10 38 38 H 1.07994 * 120.03457 * 180.30195 * 18 4 3 39 39 H 1.08003 * 119.95892 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1967 0.0000 4 6 3.5858 1.1957 -0.0054 5 7 4.2865 2.4039 -0.0112 6 6 5.7515 2.4010 -0.0107 7 6 6.2643 3.8425 -0.0183 8 6 5.7561 4.5580 -1.2716 9 6 5.7555 4.5715 1.2269 10 6 7.7713 3.8395 -0.0185 11 1 8.3095 2.9031 -0.0140 12 6 8.4631 5.0322 -0.0254 13 7 7.8077 6.1724 -0.0313 14 14 10.3311 5.0285 -0.0263 15 1 10.8254 5.0199 -1.4266 16 1 10.8288 6.2438 0.6669 17 1 10.8240 3.8189 0.6802 18 6 4.2765 -0.0098 0.0009 19 6 3.5806 -1.2024 0.0066 20 6 2.1976 -1.1978 0.0062 21 7 1.4550 -2.4781 0.0118 22 8 2.0562 -3.5313 -0.1012 23 8 0.2426 -2.4785 0.1295 24 1 -0.3634 -0.1182 1.0208 25 1 -0.3634 0.9432 -0.4080 26 1 -0.3633 -0.8249 -0.6128 27 1 1.6569 2.1320 -0.0004 28 1 3.8032 3.2449 -0.0155 29 1 6.1141 1.8820 -0.8980 30 1 6.1136 1.8909 0.8819 31 1 4.6662 4.5602 -1.2720 32 1 6.1211 5.5851 -1.2768 33 1 6.1187 4.0386 -2.1587 34 1 6.1175 4.0618 2.1196 35 1 6.1204 5.5985 1.2212 36 1 4.6654 4.5737 1.2265 37 1 8.2944 7.0115 -0.0358 38 1 5.3564 -0.0140 0.0017 39 1 4.1169 -2.1398 0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413415828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:49 Heat of formation + Delta-G solvation = -0.741995 kcal Electronic energy + Delta-G solvation = -21343.609374 eV Core-core repulsion = 18060.532946 eV Total energy + Delta-G solvation = -3283.076428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.10161 -40.79313 -38.63780 -37.57467 -35.93294 -33.65542 -33.22422 -30.96389 -28.85577 -27.59130 -27.41098 -26.63958 -25.87850 -23.60005 -22.42471 -20.59876 -19.85924 -19.39595 -18.70905 -18.46644 -17.62598 -16.92038 -16.51920 -15.64546 -15.61658 -15.24676 -14.89006 -14.69292 -14.42384 -14.05889 -13.93906 -13.68580 -13.53264 -13.13811 -13.10791 -12.73313 -12.60479 -12.35844 -12.32778 -12.25210 -12.14064 -12.11410 -11.64240 -11.56547 -11.21914 -11.20665 -10.71986 -10.39706 -10.06671 -8.74184 -8.04029 -6.19951 -0.90853 0.13638 0.57505 0.67351 1.42045 1.46621 1.52600 2.28017 2.46090 2.48699 3.21021 3.50538 3.56531 3.96383 4.00537 4.22054 4.34207 4.49812 4.51203 4.65118 4.69372 4.74519 4.82427 4.95756 5.00396 5.02940 5.06005 5.12463 5.17324 5.19737 5.32197 5.43524 5.64424 5.65807 5.67384 6.06066 6.12295 6.20663 6.40271 6.62422 6.75746 6.87187 7.48970 8.94618 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037238 B = 0.003438 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.746973 B = 8141.813236 C = 8695.873635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.032 3.968 3 C -0.207 4.207 4 C 0.276 3.724 5 N -0.704 5.704 6 C 0.138 3.862 7 C 0.051 3.949 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.525 4.525 11 H 0.054 0.946 12 C 0.027 3.973 13 N -0.901 5.901 14 Si 0.942 3.058 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.271 1.271 18 C -0.210 4.210 19 C -0.001 4.001 20 C -0.142 4.142 21 N 0.051 4.949 22 O -0.229 6.229 23 O -0.182 6.182 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.164 0.836 28 H 0.410 0.590 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.057 0.943 36 H 0.033 0.967 37 H 0.258 0.742 38 H 0.149 0.851 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 -7.111 0.092 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.029 3.971 3 C -0.230 4.230 4 C 0.162 3.838 5 N -0.327 5.327 6 C 0.015 3.985 7 C 0.050 3.950 8 C -0.181 4.181 9 C -0.181 4.181 10 C -0.564 4.564 11 H 0.072 0.928 12 C -0.173 4.173 13 N -0.540 5.540 14 Si 0.769 3.231 15 H -0.207 1.207 16 H -0.215 1.215 17 H -0.196 1.196 18 C -0.233 4.233 19 C -0.021 4.021 20 C -0.230 4.230 21 N 0.556 4.444 22 O -0.429 6.429 23 O -0.394 6.394 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.182 0.818 28 H 0.248 0.752 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.167 0.833 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.998 -6.353 0.086 11.845 hybrid contribution 1.051 0.149 -0.008 1.062 sum -8.946 -6.203 0.078 10.887 Atomic orbital electron populations 1.21316 0.87627 1.05005 1.04610 1.19708 0.98316 0.89457 0.89584 1.20660 0.91375 0.98334 1.12619 1.18452 0.91721 0.87065 0.86522 1.45405 1.06916 1.05349 1.74981 1.21588 0.77456 0.99325 1.00169 1.18333 0.94055 0.89614 0.92964 1.21688 0.96828 1.02411 0.97140 1.21685 0.96827 1.02409 0.97135 1.21307 0.91795 0.92396 1.50865 0.92812 1.25460 1.01428 0.95558 0.94864 1.69920 1.35842 0.97427 1.50828 0.85804 0.82026 0.77362 0.77881 1.20712 1.21491 1.19596 1.20772 1.01256 0.89584 1.11708 1.20784 0.90536 1.00208 0.90568 1.20760 0.92584 0.82251 1.27407 1.43711 1.00894 1.03259 0.96578 1.94488 1.70395 1.21258 1.56769 1.94390 0.97125 1.94088 1.53785 0.88961 0.88743 0.89538 0.81809 0.75200 0.92480 0.92484 0.94783 0.92407 0.95996 0.95971 0.92416 0.94779 0.93224 0.83297 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.67 71.24 0.62 -1.70 16 2 C 0.03 0.72 5.88 -19.88 -0.12 0.60 16 3 C -0.21 -4.29 9.52 22.40 0.21 -4.07 16 4 C 0.28 6.62 6.65 38.22 0.25 6.87 16 5 N -0.70 -18.46 5.14 -339.40 -1.74 -20.20 16 6 C 0.14 4.47 3.74 86.38 0.32 4.80 16 7 C 0.05 2.05 0.50 -52.92 -0.03 2.03 16 8 C -0.12 -4.94 8.08 71.98 0.58 -4.35 16 9 C -0.12 -4.93 8.08 71.98 0.58 -4.35 16 10 C -0.53 -24.90 8.01 25.60 0.21 -24.69 16 11 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 12 C 0.03 1.31 5.15 84.65 0.44 1.75 16 13 N -0.90 -45.86 9.35 21.45 0.20 -45.66 16 14 Si 0.94 40.01 29.54 68.60 2.03 42.03 16 15 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 C -0.21 -5.05 9.31 22.40 0.21 -4.84 16 19 C 0.00 -0.02 9.55 22.25 0.21 0.20 16 20 C -0.14 -3.72 6.83 36.40 0.25 -3.47 16 21 N 0.05 1.53 4.45 -46.42 -0.21 1.32 16 22 O -0.23 -7.34 18.46 18.89 0.35 -6.99 16 23 O -0.18 -5.32 15.35 18.88 0.29 -5.03 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.09 1.22 8.04 -2.39 -0.02 1.20 16 26 H 0.09 1.76 5.86 -2.39 -0.01 1.74 16 27 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.41 10.13 6.18 -92.71 -0.57 9.56 16 29 H 0.06 1.86 7.95 -2.38 -0.02 1.84 16 30 H 0.06 1.86 7.95 -2.39 -0.02 1.84 16 31 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 32 H 0.06 2.69 6.07 -2.39 -0.01 2.68 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 2.68 6.07 -2.39 -0.01 2.67 16 36 H 0.03 1.14 6.86 -2.38 -0.02 1.12 16 37 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 38 H 0.15 3.42 6.73 -2.91 -0.02 3.40 16 39 H 0.16 3.40 7.62 -2.91 -0.02 3.37 16 Total: -1.00 -53.43 318.30 5.15 -48.28 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.50 Total: 17.48 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 3.74 Total: -31.23 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -1.75 Total: -64.54 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.64 Total: -12.02 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -53.43 5.15 -48.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413415828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.538 kcal (2) G-P(sol) polarization free energy of solvation -53.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds