Wall clock time and date at job start Mon Mar 30 2020 23:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38276 * 119.91498 * 2 1 4 4 C 1.38252 * 120.17884 * 180.02562 * 3 2 1 5 5 C 1.38548 * 120.00934 * 359.97438 * 4 3 2 6 6 O 1.35980 * 120.07721 * 179.97438 * 5 4 3 7 7 C 1.39297 * 119.84438 * 359.97438 * 5 4 3 8 8 N 1.40118 * 120.09147 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99608 * 214.90755 * 8 7 5 10 10 O 1.21291 * 120.00424 * 355.54626 * 9 8 7 11 11 C 1.50702 * 120.00067 * 175.54542 * 9 8 7 12 12 H 1.09003 * 109.47031 * 39.99516 * 11 9 8 13 13 N 1.46899 * 109.47501 * 159.99806 * 11 9 8 14 14 C 1.52998 * 109.47126 * 279.99946 * 11 9 8 15 15 C 1.53007 * 109.47066 * 174.99650 * 14 11 9 16 16 C 1.50703 * 109.47099 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99733 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99704 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99916 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46949 * 90.00239 * 20 18 16 22 22 H 1.48506 * 109.46769 * 210.00072 * 20 18 16 23 23 H 1.48494 * 109.47266 * 329.99760 * 20 18 16 24 24 C 1.38204 * 119.91980 * 180.23024 * 2 1 3 25 25 H 1.08996 * 109.46990 * 90.00552 * 1 2 3 26 26 H 1.09004 * 109.46891 * 210.00301 * 1 2 3 27 27 H 1.08995 * 109.47040 * 329.99870 * 1 2 3 28 28 H 1.07998 * 119.91133 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99197 * 179.97438 * 4 3 2 30 30 H 0.96701 * 113.99603 * 270.01870 * 6 5 4 31 31 H 0.96997 * 120.00260 * 34.90735 * 8 7 5 32 32 H 1.00900 * 110.99856 * 296.05207 * 13 11 9 33 33 H 1.00902 * 110.99834 * 59.99655 * 13 11 9 34 34 H 1.09004 * 109.47340 * 55.00269 * 14 11 9 35 35 H 1.08994 * 109.47232 * 294.99921 * 14 11 9 36 36 H 1.08994 * 109.46996 * 60.00395 * 15 14 11 37 37 H 1.08998 * 109.47070 * 299.99766 * 15 14 11 38 38 H 0.97001 * 120.00462 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00388 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5791 1.2049 -0.0005 5 6 4.2776 0.0084 -0.0005 6 8 5.6374 0.0130 -0.0016 7 6 3.5836 -1.1994 0.0005 8 7 4.2847 -2.4126 0.0011 9 6 3.7929 -3.4754 -0.6660 10 8 2.7055 -3.4068 -1.1989 11 6 4.5940 -4.7491 -0.7497 12 1 5.0749 -4.9396 0.2097 13 7 3.7016 -5.8680 -1.0809 14 6 5.6617 -4.6094 -1.8366 15 6 6.5541 -5.8523 -1.8375 16 6 7.6055 -5.7150 -2.9084 17 1 7.6346 -4.8297 -3.5262 18 6 8.5303 -6.7197 -3.0994 19 7 9.4481 -6.5997 -4.0336 20 14 8.4795 -8.2513 -2.0312 21 1 7.6088 -9.2711 -2.6692 22 1 9.8528 -8.7963 -1.8818 23 1 7.9366 -7.9039 -0.6933 24 6 2.1964 -1.1978 -0.0048 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6538 2.1322 -0.0004 29 1 4.1147 2.1428 -0.0010 30 1 6.0299 0.0142 -0.8853 31 1 5.1240 -2.4875 0.4815 32 1 3.0268 -6.0219 -0.3467 33 1 3.2434 -5.7151 -1.9668 34 1 6.2691 -3.7263 -1.6379 35 1 5.1795 -4.5076 -2.8087 36 1 5.9469 -6.7354 -2.0361 37 1 7.0364 -5.9540 -0.8653 38 1 10.0985 -7.3066 -4.1683 39 1 1.6551 -2.1324 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424150685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:05 Heat of formation + Delta-G solvation = -66.469980 kcal Electronic energy + Delta-G solvation = -21207.931235 eV Core-core repulsion = 17922.004628 eV Total energy + Delta-G solvation = -3285.926607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.89532 -39.25245 -37.06247 -35.57829 -34.90669 -32.81328 -31.83339 -30.56389 -30.05118 -26.92131 -26.45276 -24.19174 -22.75028 -21.50231 -20.48912 -19.99017 -18.67931 -17.45069 -17.12766 -16.66278 -15.97679 -15.71619 -15.56634 -14.98304 -14.38999 -14.21004 -14.07292 -13.91801 -13.69949 -13.59124 -12.88376 -12.65481 -12.43897 -12.09608 -12.03352 -11.79950 -11.76080 -11.14033 -10.99539 -10.90749 -10.49915 -10.21598 -10.04293 -9.74946 -9.65480 -9.15303 -8.78646 -8.59240 -8.47007 -8.18238 -6.01870 -3.99848 0.97717 1.15239 2.50442 2.98747 3.35951 3.42533 3.43489 3.47572 4.06263 4.49101 4.56143 4.66967 4.70358 4.86193 5.08012 5.08835 5.27434 5.30669 5.34196 5.40541 5.49366 5.57135 5.68468 5.83160 5.98413 6.10534 6.21167 6.27522 6.39977 6.43685 6.72672 6.80910 7.12395 7.32019 7.35323 7.47138 7.51938 7.57189 7.82963 8.03276 8.54811 9.02308 9.60921 11.11585 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.003745 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.989837 B = 7474.928434 C = 8156.728116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.124 4.124 5 C 0.071 3.929 6 O -0.495 6.495 7 C 0.130 3.870 8 N -0.668 5.668 9 C 0.483 3.517 10 O -0.533 6.533 11 C 0.078 3.922 12 H 0.102 0.898 13 N -0.809 5.809 14 C -0.087 4.087 15 C -0.004 4.004 16 C -0.522 4.522 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.906 5.906 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.392 0.608 31 H 0.418 0.582 32 H 0.336 0.664 33 H 0.351 0.649 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 14.090 10.763 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.143 4.143 5 C 0.024 3.976 6 O -0.305 6.305 7 C 0.035 3.965 8 N -0.313 5.313 9 C 0.271 3.729 10 O -0.409 6.409 11 C -0.038 4.038 12 H 0.120 0.880 13 N -0.337 5.337 14 C -0.126 4.126 15 C -0.041 4.041 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.545 5.545 20 Si 0.711 3.289 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.131 4.131 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.149 0.851 30 H 0.248 0.752 31 H 0.254 0.746 32 H 0.148 0.852 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.032 0.968 38 H 0.072 0.928 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.199 13.488 10.877 23.049 hybrid contribution -0.044 -0.024 0.167 0.174 sum -15.243 13.464 11.044 23.143 Atomic orbital electron populations 1.20765 0.90847 1.02688 1.02525 1.19848 0.96341 0.92524 0.99299 1.20878 0.93458 0.97674 1.02363 1.21207 0.94387 0.97218 1.01451 1.18222 0.83252 0.91010 1.05067 1.84815 1.15466 1.96297 1.33946 1.18214 0.91704 0.85279 1.01347 1.43732 1.26236 1.09326 1.52027 1.22982 0.87292 0.86481 0.76186 1.90648 1.21430 1.83150 1.45650 1.21902 0.94530 0.84473 1.02931 0.88044 1.59025 1.26451 1.39973 1.08274 1.21490 0.94360 1.01358 0.95357 1.19484 0.94303 0.93333 0.97015 1.21160 1.12154 1.05555 1.17175 0.91321 1.25017 0.95079 0.98359 0.95050 1.69920 1.17704 1.34043 1.32832 0.86726 0.76906 0.83498 0.81811 1.20274 1.21683 1.18888 1.21113 0.91988 0.99097 1.00929 0.90994 0.91499 0.91483 0.85664 0.85091 0.75207 0.74557 0.85170 0.83469 0.92080 0.92147 0.95190 0.96812 0.92796 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.22 9.69 -39.56 -0.38 -1.60 16 4 C -0.12 -1.28 9.98 -39.46 -0.39 -1.67 16 5 C 0.07 0.85 6.72 -39.07 -0.26 0.59 16 6 O -0.50 -5.41 13.07 -19.68 -0.26 -5.67 16 7 C 0.13 1.71 6.32 -83.50 -0.53 1.18 16 8 N -0.67 -8.53 5.19 -9.75 -0.05 -8.58 16 9 C 0.48 7.05 6.91 -10.98 -0.08 6.98 16 10 O -0.53 -8.89 13.67 5.55 0.08 -8.81 16 11 C 0.08 1.17 3.15 -68.87 -0.22 0.95 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 N -0.81 -12.02 8.44 -5.65 -0.05 -12.07 16 14 C -0.09 -1.63 4.78 -26.73 -0.13 -1.76 16 15 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 16 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 20 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 24 C -0.11 -1.44 8.35 -39.42 -0.33 -1.77 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.39 3.04 9.06 45.56 0.41 3.45 16 31 H 0.42 4.67 8.57 -40.82 -0.35 4.32 16 32 H 0.34 4.23 9.06 -39.29 -0.36 3.88 16 33 H 0.35 5.33 8.58 -39.29 -0.34 4.99 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 37 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.14 1.99 6.19 -52.49 -0.33 1.66 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -33.49 330.41 -6.97 -40.46 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.66 Total: 12.29 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.11 Total: -12.57 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.68 Total: -47.85 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.18 Total: -14.49 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.49 -6.97 -40.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.011 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds