Wall clock time and date at job start Mon Mar 30 2020 23:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38276 * 119.91498 * 2 1 4 4 C 1.38252 * 120.17884 * 180.02562 * 3 2 1 5 5 C 1.38548 * 120.00934 * 359.97438 * 4 3 2 6 6 O 1.35980 * 120.07721 * 179.97438 * 5 4 3 7 7 C 1.39297 * 119.84438 * 359.97438 * 5 4 3 8 8 N 1.40118 * 120.09147 * 180.02562 * 7 5 4 9 9 C 1.34777 * 119.99608 * 214.90755 * 8 7 5 10 10 O 1.21291 * 120.00424 * 355.54626 * 9 8 7 11 11 C 1.50702 * 120.00067 * 175.54542 * 9 8 7 12 12 H 1.09003 * 109.47031 * 39.99516 * 11 9 8 13 13 N 1.46899 * 109.47501 * 159.99806 * 11 9 8 14 14 C 1.52998 * 109.47126 * 279.99946 * 11 9 8 15 15 C 1.53007 * 109.47066 * 174.99650 * 14 11 9 16 16 C 1.50703 * 109.47099 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99733 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99842 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99704 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99916 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46949 * 90.00239 * 20 18 16 22 22 H 1.48506 * 109.46769 * 210.00072 * 20 18 16 23 23 H 1.48494 * 109.47266 * 329.99760 * 20 18 16 24 24 C 1.38204 * 119.91980 * 180.23024 * 2 1 3 25 25 H 1.08996 * 109.46990 * 90.00552 * 1 2 3 26 26 H 1.09004 * 109.46891 * 210.00301 * 1 2 3 27 27 H 1.08995 * 109.47040 * 329.99870 * 1 2 3 28 28 H 1.07998 * 119.91133 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99197 * 179.97438 * 4 3 2 30 30 H 0.96701 * 113.99603 * 270.01870 * 6 5 4 31 31 H 0.96997 * 120.00260 * 34.90735 * 8 7 5 32 32 H 1.00900 * 110.99856 * 296.05207 * 13 11 9 33 33 H 1.00902 * 110.99834 * 59.99655 * 13 11 9 34 34 H 1.09004 * 109.47340 * 55.00269 * 14 11 9 35 35 H 1.08994 * 109.47232 * 294.99921 * 14 11 9 36 36 H 1.08994 * 109.46996 * 60.00395 * 15 14 11 37 37 H 1.08998 * 109.47070 * 299.99766 * 15 14 11 38 38 H 0.97001 * 120.00462 * 180.02562 * 19 18 16 39 39 H 1.07996 * 120.00388 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1985 0.0000 4 6 3.5791 1.2049 -0.0005 5 6 4.2776 0.0084 -0.0005 6 8 5.6374 0.0130 -0.0016 7 6 3.5836 -1.1994 0.0005 8 7 4.2847 -2.4126 0.0011 9 6 3.7929 -3.4754 -0.6660 10 8 2.7055 -3.4068 -1.1989 11 6 4.5940 -4.7491 -0.7497 12 1 5.0749 -4.9396 0.2097 13 7 3.7016 -5.8680 -1.0809 14 6 5.6617 -4.6094 -1.8366 15 6 6.5541 -5.8523 -1.8375 16 6 7.6055 -5.7150 -2.9084 17 1 7.6346 -4.8297 -3.5262 18 6 8.5303 -6.7197 -3.0994 19 7 9.4481 -6.5997 -4.0336 20 14 8.4795 -8.2513 -2.0312 21 1 7.6088 -9.2711 -2.6692 22 1 9.8528 -8.7963 -1.8818 23 1 7.9366 -7.9039 -0.6933 24 6 2.1964 -1.1978 -0.0048 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6538 2.1322 -0.0004 29 1 4.1147 2.1428 -0.0010 30 1 6.0299 0.0142 -0.8853 31 1 5.1240 -2.4875 0.4815 32 1 3.0268 -6.0219 -0.3467 33 1 3.2434 -5.7151 -1.9668 34 1 6.2691 -3.7263 -1.6379 35 1 5.1795 -4.5076 -2.8087 36 1 5.9469 -6.7354 -2.0361 37 1 7.0364 -5.9540 -0.8653 38 1 10.0985 -7.3066 -4.1683 39 1 1.6551 -2.1324 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424150685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:04 Heat of formation + Delta-G solvation = -92.867608 kcal Electronic energy + Delta-G solvation = -21209.075923 eV Core-core repulsion = 17922.004628 eV Total energy + Delta-G solvation = -3287.071294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90866 -40.24702 -37.88717 -36.97238 -35.97754 -34.81181 -32.59410 -32.31778 -31.00029 -28.42051 -27.29175 -25.63738 -23.83259 -22.50631 -21.99158 -21.25226 -19.57835 -18.98550 -18.30333 -18.10496 -16.99866 -16.86148 -16.50688 -16.28967 -16.01361 -15.38369 -15.13886 -14.99696 -14.78647 -14.62379 -14.43706 -14.02463 -13.61424 -13.55678 -12.93305 -12.82537 -12.77387 -12.59938 -12.50934 -12.03510 -11.83471 -11.77151 -11.63204 -11.34826 -11.25941 -11.04327 -10.71519 -9.76063 -9.64051 -9.08609 -8.25347 -6.28685 0.11431 0.28651 1.38232 1.42092 1.42688 1.55515 1.96108 2.41180 2.59635 3.11499 3.24728 3.44419 3.67845 3.88767 3.96864 4.01689 4.20417 4.29729 4.35472 4.46933 4.67318 4.76198 4.79426 4.81521 4.87167 5.11580 5.15074 5.18190 5.25969 5.40144 5.48786 5.60852 5.64189 5.71910 5.89286 6.00363 6.28431 6.31599 6.47270 6.70784 6.79907 6.96044 7.35947 8.91534 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027337 B = 0.003745 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.989837 B = 7474.928434 C = 8156.728116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.119 4.119 4 C -0.125 4.125 5 C 0.063 3.937 6 O -0.502 6.502 7 C 0.104 3.896 8 N -0.657 5.657 9 C 0.488 3.512 10 O -0.556 6.556 11 C 0.089 3.911 12 H 0.123 0.877 13 N -0.816 5.816 14 C -0.079 4.079 15 C 0.003 3.997 16 C -0.531 4.531 17 H 0.029 0.971 18 C 0.002 3.998 19 N -0.955 5.955 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.241 1.241 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.404 0.596 31 H 0.424 0.576 32 H 0.350 0.650 33 H 0.348 0.652 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 14.754 12.743 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.144 4.144 5 C 0.016 3.984 6 O -0.314 6.314 7 C 0.009 3.991 8 N -0.303 5.303 9 C 0.275 3.725 10 O -0.434 6.434 11 C -0.027 4.027 12 H 0.141 0.859 13 N -0.345 5.345 14 C -0.117 4.117 15 C -0.035 4.035 16 C -0.569 4.569 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.596 5.596 20 Si 0.777 3.223 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.164 1.164 24 C -0.150 4.150 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.174 0.826 29 H 0.171 0.829 30 H 0.262 0.738 31 H 0.263 0.737 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.357 14.181 12.882 25.191 hybrid contribution 0.310 -0.087 -0.510 0.603 sum -16.048 14.094 12.372 24.683 Atomic orbital electron populations 1.20817 0.89114 1.03755 1.03026 1.20184 0.97753 0.92204 0.98537 1.21260 0.93428 0.98472 1.00576 1.21531 0.94880 0.97489 1.00474 1.18388 0.83608 0.91154 1.05212 1.84779 1.15179 1.96281 1.35148 1.18436 0.92051 0.85597 1.03049 1.43574 1.26266 1.09036 1.51432 1.22759 0.86927 0.86656 0.76198 1.90643 1.22462 1.83495 1.46815 1.21683 0.93747 0.85025 1.02269 0.85917 1.59020 1.26981 1.39736 1.08751 1.21264 0.94803 0.99621 0.96013 1.19371 0.93478 0.95222 0.95423 1.21558 1.13494 1.04092 1.17805 0.95299 1.26012 0.94628 1.02185 0.96565 1.70077 1.18951 1.35516 1.35079 0.85606 0.77134 0.78801 0.80731 1.19712 1.21378 1.16417 1.21133 0.92154 0.99418 1.02345 0.90669 0.91699 0.89208 0.82561 0.82897 0.73802 0.73742 0.83583 0.83853 0.91539 0.93981 0.95315 0.95729 0.92645 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.09 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.12 -2.00 9.69 22.28 0.22 -1.78 16 4 C -0.12 -2.29 9.98 22.35 0.22 -2.07 16 5 C 0.06 1.42 6.72 22.60 0.15 1.58 16 6 O -0.50 -10.35 13.07 -93.33 -1.22 -11.57 16 7 C 0.10 2.66 6.32 38.19 0.24 2.90 16 8 N -0.66 -16.38 5.19 -303.14 -1.57 -17.95 16 9 C 0.49 13.95 6.91 87.66 0.61 14.55 16 10 O -0.56 -18.58 13.67 -3.06 -0.04 -18.62 16 11 C 0.09 2.55 3.15 44.17 0.14 2.69 16 12 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 13 N -0.82 -23.14 8.44 -171.80 -1.45 -24.59 16 14 C -0.08 -2.90 4.78 30.60 0.15 -2.76 16 15 C 0.00 0.12 3.93 29.85 0.12 0.23 16 16 C -0.53 -30.45 9.66 25.60 0.25 -30.20 16 17 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 18 C 0.00 0.14 5.47 84.66 0.46 0.60 16 19 N -0.96 -60.35 13.96 21.45 0.30 -60.05 16 20 Si 0.95 44.56 27.47 68.60 1.88 46.45 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 24 C -0.13 -3.34 8.35 22.38 0.19 -3.15 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.96 8.09 -2.39 -0.02 0.94 16 27 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.40 5.88 9.06 -74.06 -0.67 5.20 16 31 H 0.42 9.04 8.57 -92.71 -0.79 8.25 16 32 H 0.35 8.25 9.06 -89.69 -0.81 7.43 16 33 H 0.35 10.36 8.58 -89.69 -0.77 9.59 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.03 1.31 7.18 -2.39 -0.02 1.29 16 37 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.85 16 39 H 0.12 3.57 6.19 -2.91 -0.02 3.55 16 Total: -1.00 -73.08 330.41 -0.76 -73.84 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -1.99 Total: 32.65 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.33 Total: -20.15 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -2.72 Total: -102.60 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.26 Total: -30.19 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -73.08 -0.76 -73.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.028 kcal (2) G-P(sol) polarization free energy of solvation -73.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds