Wall clock time and date at job start Mon Mar 30 2020 23:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38278 * 119.91867 * 2 1 4 4 C 1.38251 * 120.17934 * 179.77064 * 3 2 1 5 5 C 1.38543 * 120.01471 * 0.50387 * 4 3 2 6 6 O 1.35973 * 120.08229 * 179.76923 * 5 4 3 7 7 C 1.39298 * 119.83627 * 359.50025 * 5 4 3 8 8 N 1.40119 * 120.09132 * 180.22997 * 7 5 4 9 9 C 1.34778 * 120.00313 * 204.82630 * 8 7 5 10 10 O 1.21302 * 119.99692 * 5.52516 * 9 8 7 11 11 C 1.50697 * 120.00269 * 185.53280 * 9 8 7 12 12 H 1.08998 * 109.46946 * 319.99292 * 11 9 8 13 13 N 1.46905 * 109.46996 * 199.99631 * 11 9 8 14 14 C 1.52997 * 109.47263 * 79.99959 * 11 9 8 15 15 C 1.53006 * 109.47166 * 185.00264 * 14 11 9 16 16 C 1.50694 * 109.47242 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00216 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99639 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47101 * 60.00642 * 20 18 16 22 22 H 1.48507 * 109.46998 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47112 * 300.00190 * 20 18 16 24 24 C 1.38196 * 119.92164 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46918 * 269.97703 * 1 2 3 26 26 H 1.08994 * 109.47268 * 29.97439 * 1 2 3 27 27 H 1.08998 * 109.47317 * 149.98243 * 1 2 3 28 28 H 1.07996 * 119.91096 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.98922 * 180.25565 * 4 3 2 30 30 H 0.96705 * 114.00150 * 269.72400 * 6 5 4 31 31 H 0.96999 * 120.00211 * 24.82162 * 8 7 5 32 32 H 1.00906 * 110.99869 * 176.04250 * 13 11 9 33 33 H 1.00900 * 111.00336 * 299.99768 * 13 11 9 34 34 H 1.08999 * 109.47076 * 304.99767 * 14 11 9 35 35 H 1.08998 * 109.47148 * 64.99889 * 14 11 9 36 36 H 1.08999 * 109.46717 * 299.99723 * 15 14 11 37 37 H 1.09004 * 109.47245 * 59.99357 * 15 14 11 38 38 H 0.97009 * 119.99652 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.00548 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5791 1.2048 0.0048 5 6 4.2776 0.0084 -0.0010 6 8 5.6374 0.0130 -0.0010 7 6 3.5835 -1.1994 -0.0010 8 7 4.2846 -2.4126 -0.0019 9 6 3.7043 -3.5259 -0.4921 10 8 2.6158 -3.4589 -1.0232 11 6 4.4076 -4.8540 -0.3801 12 1 5.4720 -4.7188 -0.5724 13 7 3.8472 -5.7894 -1.3645 14 6 4.2113 -5.4179 1.0285 15 6 5.0270 -6.7033 1.1816 16 6 4.8342 -7.2585 2.5692 17 1 4.1935 -6.7460 3.2716 18 6 5.4747 -8.4212 2.9418 19 7 6.2545 -9.0454 2.0863 20 14 5.2362 -9.1089 4.6621 21 1 3.7978 -9.4058 4.8815 22 1 6.0278 -10.3565 4.8106 23 1 5.6938 -8.1108 5.6620 24 6 2.1963 -1.1978 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6539 2.1322 0.0004 29 1 4.1147 2.1427 0.0089 30 1 6.0307 0.0143 -0.8844 31 1 5.1876 -2.4512 0.3501 32 1 4.3452 -6.6669 -1.3538 33 1 2.8607 -5.9315 -1.2075 34 1 4.5462 -4.6856 1.7630 35 1 3.1555 -5.6364 1.1885 36 1 4.6921 -7.4357 0.4470 37 1 6.0829 -6.4849 1.0214 38 1 6.7054 -9.8633 2.3486 39 1 1.6551 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424150687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:08 Heat of formation + Delta-G solvation = -68.986748 kcal Electronic energy + Delta-G solvation = -21143.389452 eV Core-core repulsion = 17857.353709 eV Total energy + Delta-G solvation = -3286.035742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80567 -39.10675 -37.03164 -35.69509 -34.77425 -32.90322 -31.75225 -30.01580 -29.92801 -26.75239 -26.31295 -24.26337 -22.86566 -21.53994 -20.69619 -19.86517 -18.64342 -17.48719 -17.05013 -16.28872 -15.89881 -15.64513 -14.78673 -14.69053 -14.56890 -14.43361 -14.05814 -13.74449 -13.68291 -13.20550 -13.07724 -12.76291 -12.24340 -12.05181 -11.97157 -11.73748 -11.68906 -11.14776 -11.00860 -10.91531 -10.72173 -10.40935 -10.04081 -9.90731 -9.35081 -9.26623 -8.67820 -8.46735 -8.29530 -8.02810 -6.11250 -4.14634 1.06330 1.24526 2.71207 3.01427 3.27347 3.32130 3.34668 3.54752 4.08076 4.37259 4.65458 4.74645 4.90982 5.07292 5.16807 5.18770 5.24962 5.38439 5.47432 5.50297 5.57362 5.64573 5.81133 5.91552 6.05523 6.18102 6.22071 6.36233 6.44030 6.54263 6.80369 6.82474 7.29004 7.46076 7.48256 7.50482 7.58224 7.81003 7.85495 8.20033 8.27734 8.90881 9.50518 10.99606 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003523 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.602186 B = 7944.995690 C = 7968.155914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.120 4.120 5 C 0.060 3.940 6 O -0.494 6.494 7 C 0.142 3.858 8 N -0.669 5.669 9 C 0.525 3.475 10 O -0.516 6.516 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.830 5.830 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.386 0.614 31 H 0.417 0.583 32 H 0.357 0.643 33 H 0.346 0.654 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 18.874 -5.962 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.151 4.151 4 C -0.139 4.139 5 C 0.013 3.987 6 O -0.304 6.304 7 C 0.046 3.954 8 N -0.313 5.313 9 C 0.313 3.687 10 O -0.390 6.390 11 C -0.038 4.038 12 H 0.118 0.882 13 N -0.362 5.362 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.142 4.142 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.241 0.759 31 H 0.254 0.746 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.834 19.184 -6.309 21.020 hybrid contribution 0.436 -1.026 1.520 1.885 sum -5.398 18.157 -4.789 19.539 Atomic orbital electron populations 1.20783 0.90861 1.02929 1.02423 1.19856 0.96360 0.92471 0.98699 1.20851 0.93428 0.97651 1.03183 1.21143 0.94379 0.97020 1.01335 1.18094 0.82950 0.90941 1.06762 1.84859 1.15722 1.96320 1.33450 1.18204 0.91876 0.85039 1.00263 1.43605 1.19315 1.06714 1.61711 1.21191 0.86208 0.85520 0.75755 1.90604 1.21025 1.86057 1.41321 1.21474 0.99130 0.89182 0.94054 0.88239 1.58749 1.08820 1.17282 1.51395 1.22410 1.01823 1.00837 0.92747 1.19097 0.94723 0.90038 0.97328 1.21130 1.28549 1.08545 0.98181 0.92742 1.25005 0.95044 0.96794 0.97401 1.69937 1.30109 1.18199 1.34934 0.86633 0.78268 0.78374 0.84608 1.20199 1.21180 1.20180 1.21290 0.91984 0.99622 1.01337 0.91053 0.91528 0.91188 0.85771 0.85238 0.75896 0.74636 0.82740 0.84054 0.92386 0.92511 0.96332 0.96244 0.92780 0.83195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.07 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.13 -1.36 9.69 -39.56 -0.38 -1.74 16 4 C -0.12 -1.26 9.98 -39.46 -0.39 -1.66 16 5 C 0.06 0.72 6.72 -39.07 -0.26 0.46 16 6 O -0.49 -5.16 12.92 -19.65 -0.25 -5.41 16 7 C 0.14 1.98 6.45 -83.49 -0.54 1.45 16 8 N -0.67 -9.28 5.29 -9.75 -0.05 -9.33 16 9 C 0.52 8.47 6.89 -10.99 -0.08 8.40 16 10 O -0.52 -9.45 13.42 5.54 0.07 -9.38 16 11 C 0.08 1.26 3.21 -68.86 -0.22 1.04 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -13.70 8.94 -5.65 -0.05 -13.75 16 14 C -0.14 -2.66 4.78 -26.73 -0.13 -2.79 16 15 C 0.03 0.60 4.74 -27.88 -0.13 0.47 16 16 C -0.53 -14.33 9.11 -34.44 -0.31 -14.65 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 20 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.12 -1.73 8.37 -39.42 -0.33 -2.06 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 30 H 0.39 2.42 9.06 45.56 0.41 2.83 16 31 H 0.42 5.06 8.35 -40.82 -0.34 4.72 16 32 H 0.36 5.92 7.55 -39.29 -0.30 5.62 16 33 H 0.35 5.75 8.58 -39.29 -0.34 5.42 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.15 2.38 5.79 -52.48 -0.30 2.08 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -31.76 331.23 -7.27 -39.03 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.56 Total: 14.46 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -3.13 Total: -11.69 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.63 Total: -48.19 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.18 Total: -14.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.76 -7.27 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.958 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds