Wall clock time and date at job start Mon Mar 30 2020 23:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38278 * 119.91867 * 2 1 4 4 C 1.38251 * 120.17934 * 179.77064 * 3 2 1 5 5 C 1.38543 * 120.01471 * 0.50387 * 4 3 2 6 6 O 1.35973 * 120.08229 * 179.76923 * 5 4 3 7 7 C 1.39298 * 119.83627 * 359.50025 * 5 4 3 8 8 N 1.40119 * 120.09132 * 180.22997 * 7 5 4 9 9 C 1.34778 * 120.00313 * 204.82630 * 8 7 5 10 10 O 1.21302 * 119.99692 * 5.52516 * 9 8 7 11 11 C 1.50697 * 120.00269 * 185.53280 * 9 8 7 12 12 H 1.08998 * 109.46946 * 319.99292 * 11 9 8 13 13 N 1.46905 * 109.46996 * 199.99631 * 11 9 8 14 14 C 1.52997 * 109.47263 * 79.99959 * 11 9 8 15 15 C 1.53006 * 109.47166 * 185.00264 * 14 11 9 16 16 C 1.50694 * 109.47242 * 179.97438 * 15 14 11 17 17 H 1.08001 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00216 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99639 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47101 * 60.00642 * 20 18 16 22 22 H 1.48507 * 109.46998 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47112 * 300.00190 * 20 18 16 24 24 C 1.38196 * 119.92164 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46918 * 269.97703 * 1 2 3 26 26 H 1.08994 * 109.47268 * 29.97439 * 1 2 3 27 27 H 1.08998 * 109.47317 * 149.98243 * 1 2 3 28 28 H 1.07996 * 119.91096 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.98922 * 180.25565 * 4 3 2 30 30 H 0.96705 * 114.00150 * 269.72400 * 6 5 4 31 31 H 0.96999 * 120.00211 * 24.82162 * 8 7 5 32 32 H 1.00906 * 110.99869 * 176.04250 * 13 11 9 33 33 H 1.00900 * 111.00336 * 299.99768 * 13 11 9 34 34 H 1.08999 * 109.47076 * 304.99767 * 14 11 9 35 35 H 1.08998 * 109.47148 * 64.99889 * 14 11 9 36 36 H 1.08999 * 109.46717 * 299.99723 * 15 14 11 37 37 H 1.09004 * 109.47245 * 59.99357 * 15 14 11 38 38 H 0.97009 * 119.99652 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.00548 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5791 1.2048 0.0048 5 6 4.2776 0.0084 -0.0010 6 8 5.6374 0.0130 -0.0010 7 6 3.5835 -1.1994 -0.0010 8 7 4.2846 -2.4126 -0.0019 9 6 3.7043 -3.5259 -0.4921 10 8 2.6158 -3.4589 -1.0232 11 6 4.4076 -4.8540 -0.3801 12 1 5.4720 -4.7188 -0.5724 13 7 3.8472 -5.7894 -1.3645 14 6 4.2113 -5.4179 1.0285 15 6 5.0270 -6.7033 1.1816 16 6 4.8342 -7.2585 2.5692 17 1 4.1935 -6.7460 3.2716 18 6 5.4747 -8.4212 2.9418 19 7 6.2545 -9.0454 2.0863 20 14 5.2362 -9.1089 4.6621 21 1 3.7978 -9.4058 4.8815 22 1 6.0278 -10.3565 4.8106 23 1 5.6938 -8.1108 5.6620 24 6 2.1963 -1.1978 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6539 2.1322 0.0004 29 1 4.1147 2.1427 0.0089 30 1 6.0307 0.0143 -0.8844 31 1 5.1876 -2.4512 0.3501 32 1 4.3452 -6.6669 -1.3538 33 1 2.8607 -5.9315 -1.2075 34 1 4.5462 -4.6856 1.7630 35 1 3.1555 -5.6364 1.1885 36 1 4.6921 -7.4357 0.4470 37 1 6.0829 -6.4849 1.0214 38 1 6.7054 -9.8633 2.3486 39 1 1.6551 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424150687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:52:07 Heat of formation + Delta-G solvation = -92.962316 kcal Electronic energy + Delta-G solvation = -21144.429110 eV Core-core repulsion = 17857.353709 eV Total energy + Delta-G solvation = -3287.075401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89303 -40.18103 -37.86959 -37.20134 -35.92686 -34.87726 -32.55948 -31.73023 -31.00217 -28.22557 -27.25869 -25.90883 -23.97142 -22.69714 -22.10057 -21.15866 -19.56643 -18.88995 -18.18709 -18.05708 -16.90389 -16.65573 -16.43668 -16.04368 -15.85442 -15.77331 -15.11547 -14.91194 -14.73393 -14.46292 -14.39123 -14.07574 -13.62524 -13.48667 -13.02243 -12.89615 -12.76558 -12.66344 -12.56636 -12.48229 -11.92543 -11.83417 -11.68308 -11.38822 -11.34080 -10.68433 -10.57328 -9.71746 -9.58913 -8.99642 -8.23176 -6.33608 0.15487 0.32258 1.39034 1.40352 1.47819 1.49983 1.88042 2.38699 2.66235 3.10577 3.25743 3.53978 3.68202 3.92436 4.00473 4.04305 4.16325 4.33577 4.39165 4.49445 4.60533 4.76361 4.79835 4.83457 4.90883 5.03698 5.17431 5.20679 5.29792 5.43268 5.43817 5.62205 5.65767 5.78125 5.94073 5.99953 6.18995 6.33421 6.43312 6.76925 6.81247 7.01106 7.35548 8.87358 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022295 B = 0.003523 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.602186 B = 7944.995690 C = 7968.155914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.119 4.119 5 C 0.061 3.939 6 O -0.500 6.500 7 C 0.112 3.888 8 N -0.658 5.658 9 C 0.527 3.473 10 O -0.541 6.541 11 C 0.085 3.915 12 H 0.114 0.886 13 N -0.828 5.828 14 C -0.122 4.122 15 C 0.031 3.969 16 C -0.548 4.548 17 H 0.053 0.947 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.146 4.146 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.405 0.595 31 H 0.424 0.576 32 H 0.356 0.644 33 H 0.345 0.655 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 21.069 -5.394 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.138 4.138 5 C 0.014 3.986 6 O -0.312 6.312 7 C 0.017 3.983 8 N -0.303 5.303 9 C 0.315 3.685 10 O -0.418 6.418 11 C -0.030 4.030 12 H 0.131 0.869 13 N -0.360 5.360 14 C -0.162 4.162 15 C -0.006 4.006 16 C -0.586 4.586 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.166 4.166 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.263 0.737 31 H 0.262 0.738 32 H 0.171 0.829 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.969 21.411 -5.745 22.958 hybrid contribution 0.496 -1.616 1.318 2.144 sum -5.474 19.795 -4.427 21.009 Atomic orbital electron populations 1.20826 0.89345 1.03545 1.03145 1.20160 0.97648 0.92204 0.98287 1.21242 0.93575 0.98251 1.01115 1.21509 0.94714 0.97452 1.00096 1.18213 0.83579 0.90710 1.06100 1.84809 1.14940 1.96228 1.35202 1.18442 0.92084 0.85440 1.02362 1.43406 1.19467 1.06434 1.60959 1.20982 0.85769 0.85865 0.75884 1.90601 1.21972 1.86466 1.42724 1.21369 1.00060 0.89458 0.92131 0.86850 1.58762 1.08774 1.17247 1.51180 1.22148 1.00204 0.98894 0.94915 1.18960 0.94356 0.91708 0.95600 1.21584 1.28420 1.08948 0.99649 0.92840 1.25846 0.94760 0.97205 1.01364 1.70047 1.30989 1.18648 1.36833 0.85607 0.78396 0.77790 0.79908 1.19580 1.20689 1.19360 1.21246 0.92406 0.99742 1.03246 0.90208 0.89187 0.92304 0.82501 0.82518 0.73707 0.73781 0.82900 0.84162 0.91934 0.93461 0.97613 0.97831 0.92663 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.23 0.71 -1.18 16 2 C -0.08 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.12 -2.16 9.69 22.28 0.22 -1.95 16 4 C -0.12 -2.15 9.98 22.35 0.22 -1.93 16 5 C 0.06 1.36 6.72 22.60 0.15 1.51 16 6 O -0.50 -9.38 12.92 -93.24 -1.20 -10.59 16 7 C 0.11 3.08 6.45 38.19 0.25 3.32 16 8 N -0.66 -18.16 5.29 -303.13 -1.60 -19.77 16 9 C 0.53 17.20 6.89 87.66 0.60 17.80 16 10 O -0.54 -20.36 13.42 -3.10 -0.04 -20.40 16 11 C 0.09 2.81 3.21 44.17 0.14 2.95 16 12 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 13 N -0.83 -27.72 8.94 -171.80 -1.54 -29.26 16 14 C -0.12 -4.74 4.78 30.60 0.15 -4.60 16 15 C 0.03 1.51 4.74 29.85 0.14 1.65 16 16 C -0.55 -30.15 9.11 25.60 0.23 -29.92 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 18 C 0.01 0.39 5.46 84.65 0.46 0.85 16 19 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 20 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 C -0.15 -4.18 8.37 22.38 0.19 -3.99 16 25 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 27 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 28 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 29 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.40 4.18 9.06 -74.05 -0.67 3.51 16 31 H 0.42 10.06 8.35 -92.71 -0.77 9.29 16 32 H 0.36 12.04 7.55 -89.69 -0.68 11.36 16 33 H 0.35 11.74 8.58 -89.69 -0.77 10.97 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.01 0.29 6.87 -2.39 -0.02 0.27 16 37 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 38 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 39 H 0.12 4.16 5.79 -2.91 -0.02 4.15 16 Total: -1.00 -68.32 331.23 -0.50 -68.82 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -1.78 Total: 36.98 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 3.35 Total: -17.41 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -2.85 Total: -102.85 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.25 Total: -30.99 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.32 -0.50 -68.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424150687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.139 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds