Wall clock time and date at job start Mon Mar 30 2020 23:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 116.99961 * 2 1 4 4 C 1.38755 * 120.05483 * 0.29816 * 3 2 1 5 5 C 1.38129 * 119.94331 * 180.21144 * 4 3 2 6 6 C 1.50700 * 119.97041 * 179.79358 * 5 4 3 7 7 N 1.46498 * 109.46769 * 269.71584 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99609 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47001 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47188 * 120.00103 * 16 14 12 19 19 H 1.48497 * 109.47104 * 240.00206 * 16 14 12 20 20 C 1.38288 * 120.05587 * 359.50854 * 5 4 3 21 21 C 1.38250 * 120.10957 * 0.23859 * 20 5 4 22 22 C 1.38169 * 120.05705 * 359.97438 * 21 20 5 23 23 C 1.50693 * 120.02651 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47304 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47475 * 300.00328 * 1 2 3 26 26 H 1.09000 * 109.47216 * 60.00433 * 1 2 3 27 27 H 1.08000 * 120.03081 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 149.71942 * 6 5 4 29 29 H 1.08994 * 109.47121 * 29.71912 * 6 5 4 30 30 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 33 33 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 34 34 H 0.96997 * 119.99506 * 180.02562 * 15 14 12 35 35 H 1.07998 * 119.94580 * 180.25991 * 20 5 4 36 36 H 1.08003 * 119.96782 * 180.02562 * 21 20 5 37 37 H 1.08998 * 109.47182 * 90.00032 * 23 22 21 38 38 H 1.09001 * 109.47256 * 210.00177 * 23 22 21 39 39 H 1.08998 * 109.47298 * 330.00413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0062 5 6 1.9208 3.6048 0.0018 6 6 1.1018 4.8698 0.0039 7 7 0.8360 5.2816 -1.3767 8 6 0.1110 6.3912 -1.6212 9 8 -0.3180 7.0532 -0.6959 10 7 -0.1383 6.7670 -2.8912 11 6 -0.9258 7.9734 -3.1570 12 6 -1.0579 8.1693 -4.6454 13 1 -0.6013 7.4654 -5.3253 14 6 -1.7626 9.2467 -5.1391 15 7 -2.3190 10.1037 -4.3110 16 14 -1.9269 9.4892 -6.9839 17 1 -1.2159 8.3947 -7.6923 18 1 -3.3634 9.4700 -7.3597 19 1 -1.3326 10.7951 -7.3664 20 6 3.3018 3.6759 0.0014 21 6 4.0559 2.5171 0.0005 22 6 3.4311 1.2848 0.0005 23 6 4.2537 0.0222 -0.0011 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2127 2.3203 0.0107 28 1 1.6516 5.6578 0.5186 29 1 0.1575 4.6905 0.5178 30 1 1.1779 4.7533 -2.1148 31 1 0.2043 6.2390 -3.6293 32 1 -1.9164 7.8655 -2.7151 33 1 -0.4253 8.8376 -2.7201 34 1 -2.8151 10.8614 -4.6583 35 1 3.7921 4.6381 0.0022 36 1 5.1344 2.5753 0.0006 37 1 4.4531 -0.2828 1.0261 38 1 3.7058 -0.7678 -0.5148 39 1 5.1972 0.2039 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426436065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:23 Heat of formation + Delta-G solvation = -54.667161 kcal Electronic energy + Delta-G solvation = -20554.690506 eV Core-core repulsion = 17269.275708 eV Total energy + Delta-G solvation = -3285.414799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56242 -39.15614 -37.80299 -35.03024 -34.02186 -32.69864 -32.10187 -30.38694 -28.53999 -27.79742 -26.81859 -24.43114 -22.46183 -22.42456 -21.16739 -20.15562 -18.31108 -17.57788 -16.65198 -16.06691 -16.02046 -15.75807 -15.54129 -14.90148 -14.61255 -14.40527 -14.07116 -13.79621 -13.59423 -13.17514 -12.98403 -12.69818 -12.38540 -12.26932 -12.14413 -11.94927 -11.67353 -11.48959 -11.30863 -11.00852 -10.90392 -10.89421 -10.28996 -9.47647 -9.33555 -8.96733 -8.77272 -8.66351 -8.31777 -7.73517 -6.14008 -4.20319 0.99743 1.22281 3.02201 3.25002 3.26003 3.32524 3.35874 3.75593 3.97154 4.34802 4.42677 4.56939 4.78121 4.82188 4.90839 4.99377 5.04171 5.17482 5.22163 5.24731 5.33552 5.41938 5.45298 5.55774 5.61908 5.82293 5.97307 6.07443 6.24993 6.43320 6.55584 6.85062 7.13114 7.14714 7.53962 7.57754 7.59279 7.92988 8.06501 8.78748 8.96560 9.35280 9.50065 10.96352 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002899 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.942015 B = 9655.707655 C = 9801.204589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.316 6.316 3 C 0.122 3.878 4 C -0.185 4.185 5 C -0.067 4.067 6 C 0.182 3.818 7 N -0.753 5.753 8 C 0.693 3.307 9 O -0.601 6.601 10 N -0.729 5.729 11 C 0.266 3.734 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.133 4.133 21 C -0.086 4.086 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.392 0.608 31 H 0.386 0.614 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.263 -21.082 8.294 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.077 3.923 4 C -0.204 4.204 5 C -0.067 4.067 6 C 0.057 3.943 7 N -0.411 5.411 8 C 0.392 3.608 9 O -0.481 6.481 10 N -0.381 5.381 11 C 0.145 3.855 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.151 4.151 21 C -0.104 4.104 22 C -0.116 4.116 23 C -0.161 4.161 24 H 0.118 0.882 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.148 0.852 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.218 0.782 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.784 -20.427 9.150 24.845 hybrid contribution -0.157 -0.082 -1.649 1.659 sum 10.628 -20.509 7.501 24.287 Atomic orbital electron populations 1.23079 0.78243 1.03926 1.01697 1.86039 1.21404 1.26726 1.88769 1.18798 0.91756 0.84186 0.97596 1.21188 1.00236 0.91620 1.07335 1.19757 0.93941 0.94034 0.99013 1.19905 0.98360 0.92213 0.83805 1.45172 1.59679 1.28747 1.07517 1.16156 0.79345 0.80676 0.84588 1.90875 1.57660 1.55890 1.43635 1.45716 1.57461 1.30840 1.04101 1.18986 0.90266 0.80414 0.95799 1.21272 1.34906 1.10630 0.91097 0.91908 1.24951 0.95101 0.95476 0.98558 1.69995 1.34083 1.13781 1.34464 0.86357 0.77892 0.78148 0.84477 1.19666 1.20832 1.20809 1.21045 0.93060 0.98757 1.02267 1.20886 0.99852 0.90916 0.98779 1.19295 0.90610 0.96276 1.05394 1.20604 0.98729 0.94585 1.02205 0.88248 0.92531 0.92432 0.85161 0.90881 0.91219 0.77469 0.78164 0.95748 0.95727 0.92534 0.85460 0.85250 0.91463 0.91225 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.17 9.54 -19.42 -0.19 -3.36 16 3 C 0.12 1.31 6.66 -39.22 -0.26 1.05 16 4 C -0.18 -2.00 8.69 -39.43 -0.34 -2.35 16 5 C -0.07 -0.76 5.25 -104.64 -0.55 -1.31 16 6 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 7 N -0.75 -11.65 5.55 -66.41 -0.37 -12.02 16 8 C 0.69 14.59 8.57 -86.92 -0.74 13.84 16 9 O -0.60 -15.27 16.34 5.28 0.09 -15.18 16 10 N -0.73 -15.91 5.55 -66.41 -0.37 -16.28 16 11 C 0.27 7.23 5.43 -5.19 -0.03 7.21 16 12 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 13 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 16 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.13 -1.36 9.70 -39.56 -0.38 -1.75 16 21 C -0.09 -0.80 9.70 -39.60 -0.38 -1.19 16 22 C -0.11 -1.14 5.89 -104.48 -0.62 -1.76 16 23 C -0.10 -0.82 9.79 36.00 0.35 -0.46 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 26 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 27 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 28 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.39 5.11 8.48 -40.82 -0.35 4.77 16 31 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.57 7.53 -51.93 -0.39 0.18 16 39 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -33.77 335.96 -8.00 -41.78 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.53 Total: 6.26 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.41 Total: 3.37 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.00 Total: -53.92 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.10 Total: -18.54 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.77 -8.00 -41.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.889 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds