Wall clock time and date at job start Mon Mar 30 2020 23:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 116.99961 * 2 1 4 4 C 1.38755 * 120.05483 * 0.29816 * 3 2 1 5 5 C 1.38129 * 119.94331 * 180.21144 * 4 3 2 6 6 C 1.50700 * 119.97041 * 179.79358 * 5 4 3 7 7 N 1.46498 * 109.46769 * 269.71584 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21593 * 119.99949 * 0.28071 * 8 7 6 10 10 N 1.34777 * 120.00128 * 180.27942 * 8 7 6 11 11 C 1.46499 * 120.00065 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47138 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00213 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99609 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47001 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47188 * 120.00103 * 16 14 12 19 19 H 1.48497 * 109.47104 * 240.00206 * 16 14 12 20 20 C 1.38288 * 120.05587 * 359.50854 * 5 4 3 21 21 C 1.38250 * 120.10957 * 0.23859 * 20 5 4 22 22 C 1.38169 * 120.05705 * 359.97438 * 21 20 5 23 23 C 1.50693 * 120.02651 * 179.97438 * 22 21 20 24 24 H 1.09004 * 109.47304 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47475 * 300.00328 * 1 2 3 26 26 H 1.09000 * 109.47216 * 60.00433 * 1 2 3 27 27 H 1.08000 * 120.03081 * 359.97438 * 4 3 2 28 28 H 1.09004 * 109.47210 * 149.71942 * 6 5 4 29 29 H 1.08994 * 109.47121 * 29.71912 * 6 5 4 30 30 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 31 31 H 0.97000 * 119.99549 * 359.97438 * 10 8 7 32 32 H 1.09000 * 109.47602 * 299.99940 * 11 10 8 33 33 H 1.09006 * 109.46868 * 59.99976 * 11 10 8 34 34 H 0.96997 * 119.99506 * 180.02562 * 15 14 12 35 35 H 1.07998 * 119.94580 * 180.25991 * 20 5 4 36 36 H 1.08003 * 119.96782 * 180.02562 * 21 20 5 37 37 H 1.08998 * 109.47182 * 90.00032 * 23 22 21 38 38 H 1.09001 * 109.47256 * 210.00177 * 23 22 21 39 39 H 1.08998 * 109.47298 * 330.00413 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0062 5 6 1.9208 3.6048 0.0018 6 6 1.1018 4.8698 0.0039 7 7 0.8360 5.2816 -1.3767 8 6 0.1110 6.3912 -1.6212 9 8 -0.3180 7.0532 -0.6959 10 7 -0.1383 6.7670 -2.8912 11 6 -0.9258 7.9734 -3.1570 12 6 -1.0579 8.1693 -4.6454 13 1 -0.6013 7.4654 -5.3253 14 6 -1.7626 9.2467 -5.1391 15 7 -2.3190 10.1037 -4.3110 16 14 -1.9269 9.4892 -6.9839 17 1 -1.2159 8.3947 -7.6923 18 1 -3.3634 9.4700 -7.3597 19 1 -1.3326 10.7951 -7.3664 20 6 3.3018 3.6759 0.0014 21 6 4.0559 2.5171 0.0005 22 6 3.4311 1.2848 0.0005 23 6 4.2537 0.0222 -0.0011 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2127 2.3203 0.0107 28 1 1.6516 5.6578 0.5186 29 1 0.1575 4.6905 0.5178 30 1 1.1779 4.7533 -2.1148 31 1 0.2043 6.2390 -3.6293 32 1 -1.9164 7.8655 -2.7151 33 1 -0.4253 8.8376 -2.7201 34 1 -2.8151 10.8614 -4.6583 35 1 3.7921 4.6381 0.0022 36 1 5.1344 2.5753 0.0006 37 1 4.4531 -0.2828 1.0261 38 1 3.7058 -0.7678 -0.5148 39 1 5.1972 0.2039 -0.5158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426436065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:22 Heat of formation + Delta-G solvation = -78.654638 kcal Electronic energy + Delta-G solvation = -20555.730681 eV Core-core repulsion = 17269.275708 eV Total energy + Delta-G solvation = -3286.454974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39456 -40.75578 -38.63892 -36.41732 -35.85164 -34.40525 -33.49159 -31.14252 -29.88660 -28.58786 -28.31064 -25.57381 -24.32753 -23.20335 -22.00612 -21.88950 -19.92119 -18.64383 -17.94003 -17.49887 -17.22705 -16.71636 -16.51639 -16.45922 -16.37496 -15.42849 -15.09504 -14.98641 -14.80077 -14.37842 -14.29622 -14.04493 -13.70916 -13.57412 -13.02747 -12.96899 -12.85926 -12.78940 -12.73144 -12.24959 -12.21437 -12.03376 -11.78363 -11.44239 -11.28900 -10.81307 -10.30559 -9.78056 -9.59870 -9.09779 -8.28050 -6.44312 0.16657 0.44230 1.44034 1.45474 1.58775 1.93204 2.23160 2.36663 2.39907 2.76606 3.07024 3.52530 3.60026 3.82401 3.99954 4.17623 4.28424 4.30119 4.36419 4.57264 4.64936 4.66246 4.73461 4.79103 4.86691 4.91386 5.08796 5.26980 5.27948 5.32896 5.46060 5.49819 5.51586 5.59480 5.67472 5.82198 5.85684 6.24489 6.40392 6.67683 7.24606 7.29612 7.70725 8.84606 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.002899 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.942015 B = 9655.707655 C = 9801.204589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.326 6.326 3 C 0.110 3.890 4 C -0.190 4.190 5 C -0.076 4.076 6 C 0.184 3.816 7 N -0.728 5.728 8 C 0.692 3.308 9 O -0.648 6.648 10 N -0.723 5.723 11 C 0.285 3.715 12 C -0.554 4.554 13 H 0.083 0.917 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.986 3.014 17 H -0.253 1.253 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.136 4.136 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.103 4.103 24 H 0.121 0.879 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.133 0.867 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.408 0.592 31 H 0.404 0.596 32 H -0.014 1.014 33 H -0.014 1.014 34 H 0.269 0.731 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.782 -22.967 6.817 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.240 6.240 3 C 0.064 3.936 4 C -0.209 4.209 5 C -0.076 4.076 6 C 0.060 3.940 7 N -0.385 5.385 8 C 0.392 3.608 9 O -0.531 6.531 10 N -0.376 5.376 11 C 0.162 3.838 12 C -0.592 4.592 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.810 3.190 17 H -0.177 1.177 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.154 4.154 21 C -0.101 4.101 22 C -0.121 4.121 23 C -0.159 4.159 24 H 0.139 0.861 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.244 0.756 31 H 0.239 0.761 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.078 0.922 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.352 -22.396 7.666 26.701 hybrid contribution -0.598 0.411 -1.085 1.306 sum 11.754 -21.986 6.581 25.784 Atomic orbital electron populations 1.23288 0.76961 1.05467 1.01830 1.86030 1.22784 1.26435 1.88712 1.18988 0.92356 0.84322 0.97891 1.21235 1.00559 0.91649 1.07467 1.19506 0.94206 0.92859 1.01047 1.19954 0.98474 0.93355 0.82208 1.44952 1.57629 1.26724 1.09199 1.16296 0.79434 0.81519 0.83583 1.90843 1.59556 1.57767 1.44897 1.45307 1.57253 1.29803 1.05275 1.18426 0.88504 0.81103 0.95808 1.21630 1.35111 1.11273 0.91150 0.89880 1.26069 0.94340 0.94909 1.04310 1.70152 1.34945 1.14566 1.37300 0.85087 0.78029 0.78528 0.77406 1.17688 1.20440 1.20417 1.21202 0.92619 0.99712 1.01892 1.21171 1.01146 0.90149 0.97682 1.19683 0.90649 0.97443 1.04361 1.20642 0.99047 0.93383 1.02876 0.86085 0.92220 0.92469 0.84892 0.91334 0.91955 0.75583 0.76059 0.99589 0.99570 0.92229 0.84662 0.82621 0.90682 0.91749 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -6.11 9.54 -92.40 -0.88 -7.00 16 3 C 0.11 2.21 6.66 22.51 0.15 2.36 16 4 C -0.19 -3.94 8.69 22.37 0.19 -3.75 16 5 C -0.08 -1.63 5.25 -19.88 -0.10 -1.74 16 6 C 0.18 4.96 5.80 85.63 0.50 5.45 16 7 N -0.73 -22.12 5.55 -482.30 -2.68 -24.80 16 8 C 0.69 29.57 8.57 179.05 1.53 31.10 16 9 O -0.65 -34.09 16.34 -4.01 -0.07 -34.15 16 10 N -0.72 -31.86 5.55 -482.28 -2.68 -34.53 16 11 C 0.28 16.03 5.43 85.63 0.46 16.49 16 12 C -0.55 -30.50 9.28 25.60 0.24 -30.26 16 13 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 16 Si 0.99 42.56 29.54 68.60 2.03 44.58 16 17 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 20 C -0.14 -2.54 9.70 22.28 0.22 -2.33 16 21 C -0.08 -1.34 9.70 22.26 0.22 -1.13 16 22 C -0.12 -2.13 5.89 -19.77 -0.12 -2.25 16 23 C -0.10 -1.36 9.79 71.23 0.70 -0.66 16 24 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16 26 H 0.06 0.74 7.67 -2.39 -0.02 0.72 16 27 H 0.13 2.58 6.30 -2.91 -0.02 2.57 16 28 H 0.07 1.93 8.09 -2.38 -0.02 1.91 16 29 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 30 H 0.41 10.02 8.48 -92.71 -0.79 9.24 16 31 H 0.40 14.75 8.34 -92.71 -0.77 13.98 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.92 7.53 -2.39 -0.02 0.91 16 39 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 Total: -1.00 -74.54 335.96 1.08 -73.46 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.49 Total: 23.47 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.56 Total: 15.30 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -5.07 Total: -115.66 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.95 Total: -41.15 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.54 1.08 -73.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426436065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.192 kcal (2) G-P(sol) polarization free energy of solvation -74.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds