Wall clock time and date at job start Mon Mar 30 2020 23:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.02840 * 2 1 4 4 C 1.38249 * 120.05780 * 180.29903 * 3 2 1 5 5 C 1.38281 * 120.10986 * 359.67722 * 4 3 2 6 6 C 1.38130 * 120.05783 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02948 * 179.68078 * 2 1 3 8 8 O 1.35896 * 120.05695 * 359.97438 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.72538 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47177 * 65.00458 * 10 9 8 12 12 C 1.34778 * 120.00010 * 179.97438 * 11 10 9 13 13 O 1.21583 * 120.00292 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99887 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00167 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47459 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99687 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00721 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99256 * 179.97438 * 18 16 15 21 21 H 1.48488 * 109.47387 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46748 * 120.00403 * 20 18 16 23 23 H 1.48498 * 109.47100 * 239.99557 * 20 18 16 24 24 H 1.08999 * 109.46852 * 270.31505 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.32390 * 1 2 3 26 26 H 1.08996 * 109.46797 * 150.32281 * 1 2 3 27 27 H 1.07999 * 119.97234 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.94326 * 179.70279 * 4 3 2 29 29 H 1.07996 * 119.97422 * 180.02562 * 5 4 3 30 30 H 1.07996 * 120.02919 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 32 32 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 33 33 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 34 34 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 35 35 H 0.97003 * 120.00376 * 359.97438 * 11 10 9 36 36 H 0.97003 * 120.00499 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.47150 * 300.00283 * 15 14 12 38 38 H 1.09003 * 109.46910 * 59.99592 * 15 14 12 39 39 H 0.96996 * 120.00115 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0062 5 6 4.2752 0.0011 -0.0058 6 6 3.5887 -1.1975 0.0004 7 6 2.2012 -1.2009 0.0067 8 8 1.5235 -2.3788 0.0138 9 6 2.3036 -3.5761 0.0143 10 6 1.3733 -4.7908 0.0233 11 7 0.6069 -4.8282 -1.2246 12 6 -0.2821 -5.8180 -1.4401 13 8 -0.4477 -6.6802 -0.5990 14 7 -0.9876 -5.8521 -2.5880 15 6 -1.9535 -6.9283 -2.8225 16 6 -2.6031 -6.7359 -4.1686 17 1 -2.3239 -5.8962 -4.7877 18 6 -3.5537 -7.6319 -4.6097 19 7 -3.8940 -8.6542 -3.8555 20 14 -4.3593 -7.3929 -6.2780 21 1 -3.8064 -6.1761 -6.9250 22 1 -4.0860 -8.5756 -7.1336 23 1 -5.8256 -7.2378 -6.1020 24 1 -0.3633 0.0057 1.0277 25 1 -0.3633 0.8870 -0.5188 26 1 -0.3633 -0.8928 -0.5088 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1331 -0.0111 29 1 5.3552 0.0042 -0.0102 30 1 4.1315 -2.1312 0.0012 31 1 2.9284 -3.6031 -0.8784 32 1 2.9364 -3.5970 0.9016 33 1 1.9657 -5.7014 0.1133 34 1 0.6886 -4.7178 0.8682 35 1 0.7392 -4.1406 -1.8959 36 1 -0.8558 -5.1641 -3.2590 37 1 -1.4393 -7.8892 -2.8007 38 1 -2.7169 -6.9071 -2.0447 39 1 -4.5630 -9.2843 -4.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426437597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:26 Heat of formation + Delta-G solvation = -54.467248 kcal Electronic energy + Delta-G solvation = -20517.506199 eV Core-core repulsion = 17232.100069 eV Total energy + Delta-G solvation = -3285.406130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50215 -39.14671 -37.75290 -34.70750 -33.93880 -33.00692 -32.28026 -30.47204 -29.37552 -27.00683 -26.81902 -23.95159 -22.51372 -21.85890 -21.35980 -20.18913 -18.37544 -18.09596 -16.54529 -16.26275 -15.92378 -15.88598 -15.30528 -14.94130 -14.60212 -14.55746 -13.85928 -13.77626 -13.37244 -13.26675 -13.07360 -12.82789 -12.45857 -12.24505 -11.98518 -11.87895 -11.68157 -11.53775 -11.22499 -11.00060 -10.89908 -10.87934 -10.28014 -9.40125 -9.32266 -9.09022 -8.77372 -8.66064 -8.34579 -7.72382 -6.12912 -4.19141 1.05695 1.19516 2.92662 3.25897 3.31326 3.34779 3.41488 3.50291 3.98808 4.35245 4.47246 4.52994 4.70408 4.80407 4.82236 4.95045 5.04318 5.11377 5.21532 5.23270 5.31687 5.45601 5.56425 5.63611 5.66081 5.83336 6.04225 6.08626 6.21018 6.28740 6.54862 6.83895 7.14563 7.18787 7.55247 7.58461 7.60560 7.93659 8.07349 8.79910 8.97494 9.36275 9.51148 10.97452 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.002927 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.382377 B = 9563.115149 C =10222.710183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.158 4.158 5 C -0.088 4.088 6 C -0.207 4.207 7 C 0.131 3.869 8 O -0.305 6.305 9 C 0.048 3.952 10 C 0.145 3.855 11 N -0.755 5.755 12 C 0.693 3.307 13 O -0.603 6.603 14 N -0.729 5.729 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.394 0.606 36 H 0.386 0.614 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.057 19.347 7.438 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.106 4.106 6 C -0.226 4.226 7 C 0.085 3.915 8 O -0.219 6.219 9 C -0.028 4.028 10 C 0.020 3.980 11 N -0.414 5.414 12 C 0.393 3.607 13 O -0.482 6.482 14 N -0.381 5.381 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.227 0.773 36 H 0.218 0.782 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.527 18.283 8.221 25.357 hybrid contribution 0.011 0.624 -1.485 1.610 sum 15.539 18.907 6.737 25.383 Atomic orbital electron populations 1.20636 0.90284 1.03090 1.02421 1.19343 0.96744 0.90355 1.05174 1.20906 0.94132 0.96827 0.98463 1.21031 0.94244 0.98054 1.04282 1.20917 0.99720 0.91925 0.98048 1.21269 0.92988 0.99525 1.08794 1.18867 0.90359 0.85832 0.96435 1.86159 1.35480 1.11992 1.88243 1.23176 0.94439 0.82843 1.02307 1.21090 0.94054 0.94835 0.87978 1.45069 1.44897 1.30332 1.21060 1.16130 0.79301 0.81799 0.83466 1.90870 1.70799 1.40452 1.46072 1.45707 1.43264 1.31765 1.17364 1.18983 0.85937 0.84365 0.96184 1.21271 1.22944 1.11401 1.02266 0.91903 1.24949 0.96420 0.94849 0.97859 1.69987 1.31669 1.13625 1.37053 0.86361 0.79140 0.78134 0.83257 1.19660 1.20839 1.20816 0.91365 0.91728 0.90739 0.85505 0.86063 0.85972 0.85441 0.91261 0.90463 0.89714 0.90778 0.77307 0.78154 0.95756 0.95737 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.79 36.01 0.35 -0.69 16 2 C -0.12 -1.19 5.89 -104.47 -0.62 -1.81 16 3 C -0.09 -0.74 9.70 -39.60 -0.38 -1.13 16 4 C -0.16 -1.28 10.04 -39.56 -0.40 -1.67 16 5 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.21 -1.90 9.04 -39.43 -0.36 -2.25 16 7 C 0.13 1.41 6.66 -39.22 -0.26 1.15 16 8 O -0.31 -3.47 9.13 -19.41 -0.18 -3.65 16 9 C 0.05 0.44 4.87 37.16 0.18 0.62 16 10 C 0.15 1.82 6.06 -4.04 -0.02 1.79 16 11 N -0.76 -11.50 5.51 -65.23 -0.36 -11.86 16 12 C 0.69 14.61 8.57 -86.92 -0.74 13.87 16 13 O -0.60 -15.28 16.34 5.29 0.09 -15.19 16 14 N -0.73 -15.99 5.55 -66.41 -0.37 -16.36 16 15 C 0.27 7.26 5.43 -5.20 -0.03 7.23 16 16 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 17 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 27 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 30 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 31 H 0.07 0.56 7.66 -51.93 -0.40 0.16 16 32 H 0.08 0.56 7.66 -51.93 -0.40 0.16 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.39 5.07 8.49 -40.82 -0.35 4.72 16 36 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 37 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -34.08 336.35 -8.67 -42.75 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.54 Total: 6.45 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -3.09 Total: 2.42 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.01 Total: -53.91 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.09 Total: -18.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.08 -8.67 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.718 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds