Wall clock time and date at job start Mon Mar 30 2020 23:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38165 * 120.02840 * 2 1 4 4 C 1.38249 * 120.05780 * 180.29903 * 3 2 1 5 5 C 1.38281 * 120.10986 * 359.67722 * 4 3 2 6 6 C 1.38130 * 120.05783 * 0.02562 * 5 4 3 7 7 C 1.38709 * 120.02948 * 179.68078 * 2 1 3 8 8 O 1.35896 * 120.05695 * 359.97438 * 7 2 1 9 9 C 1.42905 * 117.00039 * 179.72538 * 8 7 2 10 10 C 1.52999 * 109.46728 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.47177 * 65.00458 * 10 9 8 12 12 C 1.34778 * 120.00010 * 179.97438 * 11 10 9 13 13 O 1.21583 * 120.00292 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99887 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00167 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47459 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99687 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99669 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00721 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99256 * 179.97438 * 18 16 15 21 21 H 1.48488 * 109.47387 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46748 * 120.00403 * 20 18 16 23 23 H 1.48498 * 109.47100 * 239.99557 * 20 18 16 24 24 H 1.08999 * 109.46852 * 270.31505 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.32390 * 1 2 3 26 26 H 1.08996 * 109.46797 * 150.32281 * 1 2 3 27 27 H 1.07999 * 119.97234 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.94326 * 179.70279 * 4 3 2 29 29 H 1.07996 * 119.97422 * 180.02562 * 5 4 3 30 30 H 1.07996 * 120.02919 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 32 32 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 33 33 H 1.09000 * 109.46738 * 185.00163 * 10 9 8 34 34 H 1.08994 * 109.47465 * 305.00250 * 10 9 8 35 35 H 0.97003 * 120.00376 * 359.97438 * 11 10 9 36 36 H 0.97003 * 120.00499 * 359.97438 * 14 12 11 37 37 H 1.09004 * 109.47150 * 300.00283 * 15 14 12 38 38 H 1.09003 * 109.46910 * 59.99592 * 15 14 12 39 39 H 0.96996 * 120.00115 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1969 -0.0062 5 6 4.2752 0.0011 -0.0058 6 6 3.5887 -1.1975 0.0004 7 6 2.2012 -1.2009 0.0067 8 8 1.5235 -2.3788 0.0138 9 6 2.3036 -3.5761 0.0143 10 6 1.3733 -4.7908 0.0233 11 7 0.6069 -4.8282 -1.2246 12 6 -0.2821 -5.8180 -1.4401 13 8 -0.4477 -6.6802 -0.5990 14 7 -0.9876 -5.8521 -2.5880 15 6 -1.9535 -6.9283 -2.8225 16 6 -2.6031 -6.7359 -4.1686 17 1 -2.3239 -5.8962 -4.7877 18 6 -3.5537 -7.6319 -4.6097 19 7 -3.8940 -8.6542 -3.8555 20 14 -4.3593 -7.3929 -6.2780 21 1 -3.8064 -6.1761 -6.9250 22 1 -4.0860 -8.5756 -7.1336 23 1 -5.8256 -7.2378 -6.1020 24 1 -0.3633 0.0057 1.0277 25 1 -0.3633 0.8870 -0.5188 26 1 -0.3633 -0.8928 -0.5088 27 1 1.6584 2.1315 -0.0004 28 1 4.1195 2.1331 -0.0111 29 1 5.3552 0.0042 -0.0102 30 1 4.1315 -2.1312 0.0012 31 1 2.9284 -3.6031 -0.8784 32 1 2.9364 -3.5970 0.9016 33 1 1.9657 -5.7014 0.1133 34 1 0.6886 -4.7178 0.8682 35 1 0.7392 -4.1406 -1.8959 36 1 -0.8558 -5.1641 -3.2590 37 1 -1.4393 -7.8892 -2.8007 38 1 -2.7169 -6.9071 -2.0447 39 1 -4.5630 -9.2843 -4.1657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426437597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:25 Heat of formation + Delta-G solvation = -78.643919 kcal Electronic energy + Delta-G solvation = -20518.554578 eV Core-core repulsion = 17232.100069 eV Total energy + Delta-G solvation = -3286.454509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28251 -40.74489 -38.53765 -36.32218 -35.67805 -34.33851 -33.68739 -31.37047 -30.40821 -28.82935 -27.60745 -25.19481 -24.17933 -22.61356 -22.16147 -21.90143 -19.85367 -19.07376 -18.08287 -17.63423 -16.99036 -16.77638 -16.60858 -16.36908 -16.18482 -15.38001 -15.22630 -14.95536 -14.67726 -14.27660 -14.13671 -14.02155 -13.97408 -13.56738 -13.15302 -12.97983 -12.86173 -12.75127 -12.69132 -12.21506 -12.19100 -11.94552 -11.67560 -11.44231 -11.24713 -10.81237 -10.29078 -9.73589 -9.58770 -9.04196 -8.28017 -6.44299 0.41097 0.52899 1.43808 1.45406 1.58682 1.88162 2.17979 2.26709 2.40208 2.84930 3.06971 3.54540 3.69566 3.88701 4.01052 4.08296 4.24747 4.27517 4.41451 4.44417 4.60145 4.73630 4.79623 4.80748 4.81571 5.01455 5.09060 5.27873 5.33531 5.44235 5.48350 5.50920 5.56191 5.64377 5.67484 5.85867 5.92309 6.24452 6.47953 6.67669 7.24719 7.30069 7.71787 8.84661 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.002927 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.382377 B = 9563.115149 C =10222.710183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.139 4.139 3 C -0.091 4.091 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.213 4.213 7 C 0.108 3.892 8 O -0.326 6.326 9 C 0.056 3.944 10 C 0.141 3.859 11 N -0.731 5.731 12 C 0.691 3.309 13 O -0.649 6.649 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.554 4.554 17 H 0.083 0.917 18 C 0.003 3.997 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.279 1.279 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.409 0.591 36 H 0.404 0.596 37 H -0.013 1.013 38 H -0.015 1.015 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.659 21.668 6.114 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.139 4.139 3 C -0.109 4.109 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.231 4.231 7 C 0.063 3.937 8 O -0.241 6.241 9 C -0.019 4.019 10 C 0.017 3.983 11 N -0.389 5.389 12 C 0.391 3.609 13 O -0.532 6.532 14 N -0.378 5.378 15 C 0.162 3.838 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.810 3.190 21 H -0.177 1.177 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.245 0.755 36 H 0.239 0.761 37 H 0.005 0.995 38 H 0.003 0.997 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.190 20.686 6.893 27.765 hybrid contribution -0.403 -0.037 -0.977 1.057 sum 16.786 20.649 5.917 27.261 Atomic orbital electron populations 1.20593 0.90514 1.02758 1.02266 1.19578 0.96975 0.91107 1.06271 1.21181 0.94779 0.96974 0.97971 1.21390 0.94136 0.99178 1.03154 1.21287 1.01063 0.91610 0.97097 1.21519 0.92407 1.00800 1.08422 1.19089 0.91223 0.85555 0.97800 1.86110 1.36512 1.12679 1.88759 1.23152 0.93392 0.80877 1.04443 1.21296 0.93998 0.97147 0.85848 1.44885 1.43043 1.28658 1.22302 1.16301 0.79754 0.82342 0.82519 1.90836 1.72301 1.42632 1.47424 1.45309 1.42781 1.31189 1.18475 1.18417 0.85527 0.84414 0.95479 1.21628 1.23122 1.12140 1.02290 0.89921 1.26070 0.96936 0.94202 1.02424 1.70145 1.32468 1.14795 1.39547 0.85088 0.77774 0.78732 0.77455 1.17709 1.20361 1.20437 0.91502 0.90340 0.92685 0.83767 0.83762 0.83598 0.83794 0.89396 0.87902 0.89044 0.92378 0.75510 0.76115 0.99501 0.99740 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.79 71.24 0.70 -1.30 16 2 C -0.14 -2.74 5.89 -19.77 -0.12 -2.86 16 3 C -0.09 -1.42 9.70 22.26 0.22 -1.21 16 4 C -0.16 -2.16 10.04 22.28 0.22 -1.94 16 5 C -0.09 -1.26 10.04 22.25 0.22 -1.03 16 6 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 7 C 0.11 2.20 6.66 22.51 0.15 2.35 16 8 O -0.33 -7.11 9.13 -92.39 -0.84 -7.95 16 9 C 0.06 0.94 4.87 71.98 0.35 1.29 16 10 C 0.14 3.43 6.06 86.38 0.52 3.96 16 11 N -0.73 -21.89 5.51 -478.55 -2.64 -24.53 16 12 C 0.69 29.68 8.57 179.05 1.53 31.21 16 13 O -0.65 -34.18 16.34 -3.98 -0.06 -34.25 16 14 N -0.72 -32.29 5.55 -482.30 -2.68 -34.97 16 15 C 0.28 16.17 5.43 85.63 0.46 16.63 16 16 C -0.55 -30.76 9.28 25.60 0.24 -30.52 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 20 Si 0.99 42.84 29.54 68.60 2.03 44.86 16 21 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 1.20 8.09 -2.39 -0.02 1.19 16 26 H 0.05 1.24 7.53 -2.39 -0.02 1.22 16 27 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 28 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 30 H 0.14 1.68 6.30 -2.91 -0.02 1.67 16 31 H 0.09 1.16 7.66 -2.39 -0.02 1.14 16 32 H 0.10 1.23 7.66 -2.39 -0.02 1.21 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.41 9.97 8.49 -92.71 -0.79 9.18 16 36 H 0.40 15.00 8.34 -92.71 -0.77 14.23 16 37 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 38 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -76.39 336.35 0.77 -75.62 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.49 Total: 23.78 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.17 Total: 14.03 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -5.03 Total: -116.10 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.91 Total: -42.20 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.39 0.77 -75.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.024 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds