Wall clock time and date at job start Mon Mar 30 2020 23:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47356 * 64.99839 * 8 7 6 10 10 C 1.34775 * 120.00008 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00040 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99837 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00177 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47653 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99410 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46851 * 60.00034 * 18 16 14 20 20 H 1.48499 * 109.46939 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47351 * 300.00226 * 18 16 14 22 22 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 23 23 C 1.38145 * 119.94323 * 359.49123 * 22 5 4 24 24 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 25 25 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 26 26 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 27 27 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 28 28 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 30 30 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 31 31 H 1.08998 * 109.47363 * 184.99948 * 8 7 6 32 32 H 1.09000 * 109.46903 * 305.00059 * 8 7 6 33 33 H 0.96998 * 119.99333 * 0.02562 * 9 8 7 34 34 H 0.97007 * 120.00076 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.46504 * 299.99771 * 13 12 10 36 36 H 1.09005 * 109.47397 * 59.99353 * 13 12 10 37 37 H 0.97000 * 119.99935 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.02769 * 179.72249 * 22 5 4 39 39 H 1.08006 * 119.97076 * 180.25587 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 7 8.2052 -0.4296 1.2545 10 6 9.5051 -0.1522 1.4779 11 8 10.3397 -0.4353 0.6404 12 7 9.8797 0.4388 2.6297 13 6 11.2925 0.7408 2.8724 14 6 11.4419 1.3954 4.2215 15 1 10.5713 1.5695 4.8366 16 6 12.6898 1.7720 4.6707 17 7 13.7499 1.5596 3.9220 18 14 12.8748 2.5841 6.3428 19 1 12.3763 1.6649 7.3973 20 1 14.3070 2.8900 6.5887 21 1 12.0881 3.8433 6.3714 22 6 3.5787 -1.2007 -0.0033 23 6 2.1973 -1.1980 0.0014 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6558 2.1327 -0.0009 28 1 4.1172 2.1370 0.0001 29 1 5.9884 -1.8297 0.8924 30 1 5.9884 -1.8305 -0.8875 31 1 8.2925 -2.0399 -0.0864 32 1 8.0813 -0.4408 -0.8391 33 1 7.5392 -0.2035 1.9225 34 1 9.2137 0.6650 3.2978 35 1 11.8705 -0.1831 2.8504 36 1 11.6578 1.4163 2.0988 37 1 14.6279 1.8250 4.2379 38 1 4.1174 -2.1367 -0.0070 39 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426439361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:29 Heat of formation + Delta-G solvation = -55.241685 kcal Electronic energy + Delta-G solvation = -20176.625604 eV Core-core repulsion = 16891.185892 eV Total energy + Delta-G solvation = -3285.439712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43438 -39.15020 -37.96966 -34.75395 -33.94324 -32.38404 -32.12130 -31.32099 -29.62326 -26.98708 -26.41117 -23.97055 -22.66406 -22.02704 -21.22911 -20.18816 -18.54610 -18.09572 -16.55210 -16.22815 -15.86238 -15.64290 -15.26590 -14.97596 -14.57729 -14.50368 -13.97790 -13.87397 -13.76108 -13.39906 -13.09342 -12.94699 -12.39273 -12.33473 -11.95544 -11.87898 -11.75835 -11.64206 -11.07296 -10.98067 -10.93903 -10.83771 -10.27314 -9.39807 -9.34846 -9.27863 -8.76748 -8.64875 -8.29286 -7.71916 -6.11994 -4.18452 1.06670 1.15368 2.93022 3.28282 3.31370 3.33580 3.41212 3.48233 3.99195 4.35754 4.44369 4.56814 4.66698 4.67858 4.82028 4.95164 4.99311 5.07386 5.20479 5.23786 5.24565 5.29169 5.43623 5.56784 5.67103 5.78435 5.83552 6.02701 6.09809 6.33132 6.52212 6.84276 7.15045 7.19348 7.55491 7.58540 7.61122 7.94338 8.07995 8.79986 8.97946 9.36663 9.51605 10.98233 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.002637 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.028706 B =10617.555461 C =11385.679871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.130 4.130 3 C -0.081 4.081 4 C -0.148 4.148 5 C 0.128 3.872 6 O -0.309 6.309 7 C 0.048 3.952 8 C 0.145 3.855 9 N -0.755 5.755 10 C 0.694 3.306 11 O -0.603 6.603 12 N -0.729 5.729 13 C 0.267 3.733 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.207 4.207 23 C -0.081 4.081 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.394 0.606 34 H 0.386 0.614 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.266 0.734 38 H 0.128 0.872 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.355 -5.207 -7.610 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.167 4.167 5 C 0.083 3.917 6 O -0.222 6.222 7 C -0.027 4.027 8 C 0.020 3.980 9 N -0.414 5.414 10 C 0.393 3.607 11 O -0.482 6.482 12 N -0.381 5.381 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.141 4.141 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.226 4.226 23 C -0.099 4.099 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.227 0.773 34 H 0.219 0.781 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.146 0.854 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.163 -5.280 -8.390 27.045 hybrid contribution -0.451 0.385 1.495 1.608 sum -25.614 -4.895 -6.895 26.974 Atomic orbital electron populations 1.20713 0.91166 1.02602 1.02071 1.19831 0.96193 0.93101 1.03941 1.20860 0.93007 0.97783 0.98256 1.20491 0.93772 0.96583 1.05821 1.19048 0.82548 0.94120 0.96016 1.86174 1.16036 1.31689 1.88312 1.23171 0.92814 0.84419 1.02315 1.21096 0.89844 0.99173 0.87895 1.45070 1.07446 1.67912 1.20953 1.16127 0.81858 0.79252 0.83450 1.90868 1.50733 1.60181 1.46428 1.45709 1.12289 1.62910 1.17205 1.18975 0.74154 0.96193 0.96090 1.21197 0.93605 1.41054 1.02165 0.92010 1.24947 0.95531 0.95697 0.97892 1.69971 0.98814 1.46322 1.37214 0.86467 0.77159 0.79746 0.83462 1.20110 1.21093 1.20097 1.21266 0.95384 0.97134 1.08770 1.20817 0.93303 0.97652 0.98151 0.91507 0.91783 0.91688 0.85459 0.85033 0.91241 0.90437 0.89683 0.90769 0.77288 0.78146 0.95744 0.95747 0.92432 0.85407 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.13 -1.07 5.88 -104.60 -0.62 -1.68 16 3 C -0.08 -0.70 9.69 -39.61 -0.38 -1.08 16 4 C -0.15 -1.50 9.99 -39.44 -0.39 -1.90 16 5 C 0.13 1.38 6.69 -39.22 -0.26 1.12 16 6 O -0.31 -3.58 10.08 -19.44 -0.20 -3.78 16 7 C 0.05 0.45 4.87 37.16 0.18 0.63 16 8 C 0.14 1.84 6.06 -4.04 -0.02 1.81 16 9 N -0.76 -11.68 5.51 -65.23 -0.36 -12.04 16 10 C 0.69 14.75 8.57 -86.92 -0.74 14.01 16 11 O -0.60 -15.39 16.34 5.29 0.09 -15.30 16 12 N -0.73 -16.13 5.55 -66.41 -0.37 -16.50 16 13 C 0.27 7.32 5.43 -5.20 -0.03 7.29 16 14 C -0.54 -15.02 9.28 -34.44 -0.32 -15.34 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 18 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C -0.21 -1.89 9.04 -39.44 -0.36 -2.24 16 23 C -0.08 -0.67 9.69 -39.61 -0.38 -1.06 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 30 H 0.08 0.57 7.65 -51.93 -0.40 0.17 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.39 5.15 8.49 -40.82 -0.35 4.80 16 34 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 35 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -34.30 337.69 -8.67 -42.97 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.57 Total: 6.21 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -3.07 Total: 2.98 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.01 Total: -54.29 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.11 Total: -19.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.30 -8.67 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426439361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.268 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds