Wall clock time and date at job start Mon Mar 30 2020 23:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38268 * 119.94321 * 2 1 4 4 C 1.38139 * 120.05510 * 179.97438 * 3 2 1 5 5 C 1.38733 * 119.94507 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05258 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.47046 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47356 * 64.99839 * 8 7 6 10 10 C 1.34775 * 120.00008 * 180.02562 * 9 8 7 11 11 O 1.21582 * 120.00040 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99837 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00177 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47653 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99410 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00219 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99934 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46851 * 60.00034 * 18 16 14 20 20 H 1.48499 * 109.46939 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47351 * 300.00226 * 18 16 14 22 22 C 1.38723 * 119.88799 * 0.25807 * 5 4 3 23 23 C 1.38145 * 119.94323 * 359.49123 * 22 5 4 24 24 H 1.08999 * 109.46991 * 90.00243 * 1 2 3 25 25 H 1.09001 * 109.46891 * 210.00393 * 1 2 3 26 26 H 1.08994 * 109.47121 * 330.00356 * 1 2 3 27 27 H 1.08008 * 119.97007 * 359.94743 * 3 2 1 28 28 H 1.08001 * 120.02451 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47144 * 300.00205 * 7 6 5 30 30 H 1.08998 * 109.47043 * 59.99803 * 7 6 5 31 31 H 1.08998 * 109.47363 * 184.99948 * 8 7 6 32 32 H 1.09000 * 109.46903 * 305.00059 * 8 7 6 33 33 H 0.96998 * 119.99333 * 0.02562 * 9 8 7 34 34 H 0.97007 * 120.00076 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.46504 * 299.99771 * 13 12 10 36 36 H 1.09005 * 109.47397 * 59.99353 * 13 12 10 37 37 H 0.97000 * 119.99935 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.02769 * 179.72249 * 22 5 4 39 39 H 1.08006 * 119.97076 * 180.25587 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2735 0.0000 0.0016 6 8 5.6325 0.0001 0.0016 7 6 6.2813 -1.2731 0.0022 8 6 7.7981 -1.0726 0.0027 9 7 8.2052 -0.4296 1.2545 10 6 9.5051 -0.1522 1.4779 11 8 10.3397 -0.4353 0.6404 12 7 9.8797 0.4388 2.6297 13 6 11.2925 0.7408 2.8724 14 6 11.4419 1.3954 4.2215 15 1 10.5713 1.5695 4.8366 16 6 12.6898 1.7720 4.6707 17 7 13.7499 1.5596 3.9220 18 14 12.8748 2.5841 6.3428 19 1 12.3763 1.6649 7.3973 20 1 14.3070 2.8900 6.5887 21 1 12.0881 3.8433 6.3714 22 6 3.5787 -1.2007 -0.0033 23 6 2.1973 -1.1980 0.0014 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5137 27 1 1.6558 2.1327 -0.0009 28 1 4.1172 2.1370 0.0001 29 1 5.9884 -1.8297 0.8924 30 1 5.9884 -1.8305 -0.8875 31 1 8.2925 -2.0399 -0.0864 32 1 8.0813 -0.4408 -0.8391 33 1 7.5392 -0.2035 1.9225 34 1 9.2137 0.6650 3.2978 35 1 11.8705 -0.1831 2.8504 36 1 11.6578 1.4163 2.0988 37 1 14.6279 1.8250 4.2379 38 1 4.1174 -2.1367 -0.0070 39 1 1.6559 -2.1326 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426439361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:28 Heat of formation + Delta-G solvation = -79.693715 kcal Electronic energy + Delta-G solvation = -20177.685924 eV Core-core repulsion = 16891.185892 eV Total energy + Delta-G solvation = -3286.500031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.23675 -40.73445 -38.74502 -36.35057 -35.71774 -34.34309 -32.89368 -31.96874 -30.82154 -28.86410 -27.07108 -25.15653 -24.23604 -22.96091 -22.00297 -21.86972 -19.86986 -19.25591 -18.08599 -17.64407 -16.96254 -16.76545 -16.49832 -16.23927 -16.13678 -15.34386 -15.24559 -14.93444 -14.59684 -14.39946 -14.37748 -14.17026 -14.00717 -13.61719 -13.07214 -12.89840 -12.89476 -12.68272 -12.60991 -12.37213 -12.22833 -11.74979 -11.66006 -11.49554 -11.25110 -10.79072 -10.29732 -9.93432 -9.59435 -8.97201 -8.27678 -6.44287 0.41402 0.48215 1.43492 1.48246 1.56198 1.87548 2.17382 2.25913 2.40339 2.82009 3.06889 3.54074 3.68566 3.94402 3.99363 4.07827 4.12181 4.29142 4.40756 4.48410 4.51892 4.73913 4.80195 4.86713 4.90179 5.08497 5.12987 5.19931 5.27526 5.40233 5.43249 5.47715 5.50431 5.67122 5.71941 5.85507 5.90534 6.24045 6.47472 6.66977 7.24412 7.29614 7.71049 8.84453 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026634 B = 0.002637 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.028706 B =10617.555461 C =11385.679871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.169 4.169 5 C 0.106 3.894 6 O -0.332 6.332 7 C 0.057 3.943 8 C 0.140 3.860 9 N -0.732 5.732 10 C 0.691 3.309 11 O -0.649 6.649 12 N -0.724 5.724 13 C 0.285 3.715 14 C -0.556 4.556 15 H 0.083 0.917 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.263 1.263 22 C -0.210 4.210 23 C -0.088 4.088 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.404 0.596 35 H -0.013 1.013 36 H -0.016 1.016 37 H 0.269 0.731 38 H 0.146 0.854 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.125 -5.541 -6.276 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C -0.106 4.106 4 C -0.187 4.187 5 C 0.061 3.939 6 O -0.246 6.246 7 C -0.018 4.018 8 C 0.016 3.984 9 N -0.390 5.390 10 C 0.391 3.609 11 O -0.532 6.532 12 N -0.378 5.378 13 C 0.162 3.838 14 C -0.594 4.594 15 H 0.101 0.899 16 C -0.197 4.197 17 N -0.569 5.569 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.188 1.188 22 C -0.229 4.229 23 C -0.106 4.106 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.144 0.856 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.245 0.755 34 H 0.239 0.761 35 H 0.005 0.995 36 H 0.002 0.998 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -28.037 -5.625 -7.052 29.452 hybrid contribution 0.316 0.455 0.982 1.127 sum -27.721 -5.170 -6.070 28.845 Atomic orbital electron populations 1.20762 0.89350 1.03496 1.02849 1.20208 0.97642 0.92908 1.02775 1.21118 0.92539 0.98997 0.97920 1.20663 0.94666 0.96545 1.06854 1.19233 0.82175 0.94978 0.97500 1.86118 1.16853 1.32758 1.88878 1.23157 0.89957 0.84177 1.04531 1.21314 0.92598 0.98756 0.85732 1.44893 1.05374 1.66473 1.22216 1.16301 0.83296 0.78814 0.82514 1.90834 1.52688 1.61914 1.47771 1.45317 1.10749 1.63412 1.18314 1.18412 0.76466 0.93500 0.95421 1.21568 0.94653 1.40997 1.02200 0.89926 1.26080 0.94979 0.96081 1.02522 1.70137 0.99563 1.47484 1.39677 0.85179 0.77193 0.78950 0.77698 1.18604 1.20995 1.18766 1.21502 0.95941 0.97187 1.08232 1.21168 0.93224 0.98716 0.97443 0.90690 0.90766 0.90993 0.83800 0.85595 0.89304 0.87790 0.88939 0.92385 0.75480 0.76090 0.99475 0.99766 0.92213 0.83657 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.23 16 2 C -0.14 -1.93 5.88 -19.85 -0.12 -2.04 16 3 C -0.09 -1.41 9.69 22.25 0.22 -1.19 16 4 C -0.17 -3.36 9.99 22.36 0.22 -3.14 16 5 C 0.11 2.17 6.69 22.50 0.15 2.32 16 6 O -0.33 -7.37 10.08 -92.48 -0.93 -8.30 16 7 C 0.06 0.95 4.87 71.98 0.35 1.30 16 8 C 0.14 3.44 6.06 86.38 0.52 3.96 16 9 N -0.73 -22.16 5.51 -478.54 -2.64 -24.79 16 10 C 0.69 29.90 8.57 179.06 1.53 31.43 16 11 O -0.65 -34.38 16.34 -3.97 -0.06 -34.44 16 12 N -0.72 -32.52 5.55 -482.30 -2.68 -35.20 16 13 C 0.29 16.26 5.43 85.63 0.46 16.73 16 14 C -0.56 -31.00 9.28 25.60 0.24 -30.77 16 15 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 18 Si 0.99 42.91 29.54 68.60 2.03 44.94 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 C -0.21 -3.37 9.04 22.36 0.20 -3.17 16 23 C -0.09 -1.23 9.69 22.25 0.22 -1.02 16 24 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 26 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 27 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.09 1.17 7.67 -2.39 -0.02 1.16 16 30 H 0.10 1.24 7.65 -2.39 -0.02 1.22 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.41 10.08 8.49 -92.71 -0.79 9.29 16 34 H 0.40 15.10 8.34 -92.70 -0.77 14.32 16 35 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 36 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -76.76 337.69 0.68 -76.08 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.49 Total: 23.59 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.18 Total: 14.80 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -5.03 Total: -116.67 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -1.00 Total: -42.74 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -76.76 0.68 -76.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426439361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.615 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds