Wall clock time and date at job start Tue Mar 31 2020 01:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41384 * 126.57935 * 2 1 4 4 C 1.34510 * 106.83837 * 179.97438 * 3 2 1 5 5 O 1.34298 * 108.42509 * 359.74291 * 4 3 2 6 6 C 1.34304 * 109.47337 * 0.43166 * 5 4 3 7 7 C 1.50699 * 125.78909 * 179.83070 * 6 5 4 8 8 N 1.46497 * 109.47293 * 269.69242 * 7 6 5 9 9 C 1.34776 * 120.00194 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00274 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00034 * 180.02562 * 9 8 7 12 12 C 1.46495 * 120.00258 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47269 * 184.79147 * 12 11 9 14 14 C 1.50694 * 115.55114 * 294.81128 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20873 * 14 13 12 16 16 C 1.37875 * 120.00314 * 274.92789 * 14 13 12 17 17 N 1.31509 * 119.99913 * 355.42420 * 16 14 13 18 18 Si 1.86807 * 120.00040 * 175.41703 * 16 14 13 19 19 H 1.48494 * 109.47052 * 60.00642 * 18 16 14 20 20 H 1.48500 * 109.47055 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47106 * 300.00083 * 18 16 14 22 22 C 1.53003 * 117.49834 * 80.48431 * 13 12 11 23 23 C 1.53006 * 117.49908 * 149.14426 * 13 12 11 24 24 H 1.09001 * 109.47136 * 270.03933 * 1 2 3 25 25 H 1.09004 * 109.46865 * 30.04511 * 1 2 3 26 26 H 1.09002 * 109.46696 * 150.03982 * 1 2 3 27 27 H 1.08002 * 126.58076 * 359.97438 * 3 2 1 28 28 H 1.08003 * 125.78778 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47472 * 149.68893 * 7 6 5 30 30 H 1.09003 * 109.47615 * 29.69299 * 7 6 5 31 31 H 0.97004 * 119.99607 * 359.97438 * 8 7 6 32 32 H 0.96999 * 119.99637 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47395 * 64.78624 * 12 11 9 34 34 H 1.09007 * 109.47080 * 304.78945 * 12 11 9 35 35 H 0.97001 * 119.99960 * 184.99387 * 17 16 14 36 36 H 1.09003 * 117.50034 * 214.99852 * 22 13 12 37 37 H 1.09002 * 117.49971 * 0.02686 * 22 13 12 38 38 H 1.08996 * 117.49810 * 359.97342 * 23 13 12 39 39 H 1.08995 * 117.50078 * 144.97442 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6616 0.0066 6 6 2.3087 -1.0802 0.0005 7 6 1.8523 -2.5164 0.0006 8 7 1.7048 -2.9821 -1.3805 9 6 1.3031 -4.2448 -1.6266 10 8 1.0635 -4.9976 -0.7024 11 7 1.1679 -4.6735 -2.8973 12 6 0.7307 -6.0458 -3.1649 13 6 0.7746 -6.3105 -4.6711 14 6 -0.1862 -5.4995 -5.5018 15 1 0.1435 -4.5826 -5.9677 16 6 -1.4847 -5.9309 -5.6718 17 7 -1.8603 -7.0935 -5.1852 18 14 -2.7103 -4.8640 -6.5933 19 1 -2.2244 -4.6347 -7.9776 20 1 -4.0274 -5.5485 -6.6375 21 1 -2.8537 -3.5604 -5.8966 22 6 2.1326 -6.6481 -5.2898 23 6 1.0718 -7.7399 -5.1288 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5146 26 1 -0.3633 -0.8904 -0.5132 27 1 2.0367 2.1691 -0.0004 28 1 4.5061 1.2923 0.0011 29 1 0.8938 -2.5930 0.5142 30 1 2.5902 -3.1322 0.5149 31 1 1.8956 -2.3814 -2.1178 32 1 1.3595 -4.0730 -3.6346 33 1 -0.2883 -6.1798 -2.8019 34 1 1.3933 -6.7444 -2.6538 35 1 -2.7519 -7.4299 -5.3665 36 1 2.3311 -6.2836 -6.2977 37 1 2.9947 -6.6821 -4.6236 38 1 1.2365 -8.4916 -4.3569 39 1 0.5721 -8.0938 -6.0305 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490382604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:13 Heat of formation + Delta-G solvation = 3.064266 kcal Electronic energy + Delta-G solvation = -21131.896650 eV Core-core repulsion = 17848.985274 eV Total energy + Delta-G solvation = -3282.911376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.79341 -39.39456 -36.79525 -35.03673 -33.93386 -33.25731 -31.94941 -30.68558 -28.26868 -26.38501 -25.44232 -24.43136 -21.64377 -21.16607 -20.34725 -19.95817 -19.38069 -17.95686 -17.08059 -16.40810 -16.13269 -15.41028 -15.26548 -14.70222 -14.45550 -14.02289 -13.95189 -13.48928 -13.26223 -13.18882 -12.85441 -12.78188 -12.62602 -12.43621 -11.77081 -11.59595 -11.51110 -10.96476 -10.95061 -10.54165 -10.22138 -9.83696 -9.79108 -9.47577 -9.03489 -8.93159 -8.63400 -8.47152 -8.22860 -7.99458 -6.06163 -4.15986 1.42343 2.32818 2.77040 3.27101 3.33266 3.34201 3.37234 3.75137 4.35593 4.45113 4.69602 4.74876 4.83866 5.21562 5.24229 5.30623 5.38520 5.51704 5.54449 5.65278 5.70627 5.90599 5.99174 6.04891 6.35639 6.36644 6.49309 6.60203 6.64079 6.72766 6.85640 6.96520 7.13811 7.30463 7.42494 7.44799 7.61262 7.82004 8.35412 8.62041 8.84948 9.15442 9.50958 11.00992 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.004014 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.636532 B = 6974.530250 C = 7697.701637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.153 4.153 3 C -0.216 4.216 4 C -0.033 4.033 5 O -0.170 6.170 6 C -0.035 4.035 7 C 0.225 3.775 8 N -0.752 5.752 9 C 0.700 3.300 10 O -0.603 6.603 11 N -0.719 5.719 12 C 0.182 3.818 13 C 0.024 3.976 14 C -0.500 4.500 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.211 4.211 23 C -0.141 4.141 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.203 0.797 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.397 0.603 32 H 0.397 0.603 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 14.416 8.358 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C -0.235 4.235 4 C -0.101 4.101 5 O -0.066 6.066 6 C -0.085 4.085 7 C 0.101 3.899 8 N -0.410 5.410 9 C 0.400 3.600 10 O -0.482 6.482 11 N -0.371 5.371 12 C 0.058 3.942 13 C 0.023 3.977 14 C -0.538 4.538 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.180 4.180 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.220 0.780 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.230 0.770 32 H 0.231 0.769 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.702 13.353 9.283 17.994 hybrid contribution -0.585 1.405 -1.241 1.964 sum 7.117 14.758 8.041 18.252 Atomic orbital electron populations 1.20268 0.88907 1.03154 1.02324 1.20359 0.97347 0.91919 1.05935 1.21753 0.92628 0.99887 1.09200 1.24043 0.99767 0.80744 1.05538 1.84049 1.28801 1.22623 1.71104 1.22212 0.81003 0.96281 1.08994 1.19280 1.01459 0.84952 0.84181 1.45127 1.75296 1.13038 1.07545 1.15978 0.78465 0.81274 0.84278 1.90880 1.58543 1.55118 1.43694 1.45157 1.71125 1.16097 1.04714 1.20873 0.98511 0.78735 0.96053 1.19044 0.92504 0.95965 0.90147 1.20300 0.94006 1.07925 1.31527 0.92335 1.24977 0.98013 0.95012 0.95019 1.69977 1.19651 1.17887 1.43513 0.86695 0.80584 0.80758 0.80144 1.20325 1.21272 1.20207 1.23015 0.93074 1.07651 1.01090 1.22465 1.01183 0.92022 1.02284 0.91234 0.91390 0.90987 0.83410 0.78046 0.88751 0.90218 0.76975 0.76916 0.91650 0.94332 0.92818 0.90461 0.91719 0.91786 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.99 36.01 0.36 -0.51 16 2 C -0.15 -1.68 6.16 -104.74 -0.65 -2.32 16 3 C -0.22 -2.03 10.87 -39.70 -0.43 -2.46 16 4 C -0.03 -0.29 12.09 29.41 0.36 0.06 16 5 O -0.17 -1.99 10.65 5.72 0.06 -1.93 16 6 C -0.03 -0.41 6.69 -35.63 -0.24 -0.65 16 7 C 0.23 2.95 5.82 -5.20 -0.03 2.92 16 8 N -0.75 -11.00 5.55 -66.41 -0.37 -11.36 16 9 C 0.70 13.37 8.57 -86.91 -0.74 12.62 16 10 O -0.60 -13.70 16.34 5.29 0.09 -13.62 16 11 N -0.72 -14.08 5.48 -65.23 -0.36 -14.44 16 12 C 0.18 4.15 5.50 -4.05 -0.02 4.13 16 13 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 14 C -0.50 -12.80 8.59 -34.44 -0.30 -13.10 16 15 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 16 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 17 N -0.87 -24.18 12.65 55.43 0.70 -23.47 16 18 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 C -0.21 -4.42 9.96 -26.69 -0.27 -4.69 16 23 C -0.14 -3.25 9.14 -26.69 -0.24 -3.50 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.77 7.78 -51.93 -0.40 0.36 16 27 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 29 H 0.09 1.22 7.76 -51.92 -0.40 0.82 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.40 5.05 8.48 -40.82 -0.35 4.70 16 32 H 0.40 7.12 8.34 -40.82 -0.34 6.78 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.04 0.88 8.09 -51.92 -0.42 0.46 16 35 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -30.63 339.67 -8.00 -38.63 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.69 Total: 10.91 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.53 Total: -5.30 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.03 Total: -49.28 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.15 Total: -15.55 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.63 -8.00 -38.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490382604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.690 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds