Wall clock time and date at job start Tue Mar 31 2020 00:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47303 * 309.32203 * 3 2 1 5 5 C 1.37092 * 119.99899 * 98.06060 * 4 3 2 6 6 H 1.08006 * 119.99881 * 159.35803 * 5 4 3 7 7 C 1.38956 * 120.00412 * 339.35879 * 5 4 3 8 8 N 1.31408 * 119.99555 * 344.11115 * 7 5 4 9 9 Si 1.86796 * 120.00197 * 164.10825 * 7 5 4 10 10 H 1.48499 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47259 * 120.00020 * 9 7 5 12 12 H 1.48498 * 109.47040 * 240.00458 * 9 7 5 13 13 C 1.34771 * 119.99801 * 278.06505 * 4 3 2 14 14 O 1.21300 * 119.99903 * 179.97438 * 13 4 3 15 15 C 1.50695 * 120.00361 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47380 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.46980 * 180.02562 * 16 15 13 18 18 C 1.53006 * 110.21574 * 300.69491 * 17 16 15 19 19 C 1.54487 * 110.24374 * 178.77114 * 17 16 15 20 20 C 1.54628 * 101.76249 * 215.58316 * 19 17 16 21 21 C 1.51278 * 104.19723 * 24.79367 * 20 19 17 22 22 O 1.21282 * 124.93814 * 163.77115 * 21 20 19 23 23 N 1.34560 * 110.14121 * 343.67984 * 21 20 19 24 24 H 4.40643 * 5.51334 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47168 * 69.32630 * 3 2 1 26 26 H 1.09001 * 109.47048 * 189.32123 * 3 2 1 27 27 H 0.96997 * 120.00086 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46859 * 299.99524 * 15 13 4 29 29 H 1.08999 * 109.47602 * 59.99959 * 15 13 4 30 30 H 1.08997 * 109.46758 * 299.99684 * 16 15 13 31 31 H 1.08997 * 109.47540 * 59.99470 * 16 15 13 32 32 H 1.08999 * 109.46609 * 60.00301 * 18 17 16 33 33 H 1.08997 * 109.46861 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47014 * 300.00141 * 18 17 16 35 35 H 1.08997 * 110.96789 * 333.69571 * 19 17 16 36 36 H 1.08994 * 110.97101 * 97.42748 * 19 17 16 37 37 H 1.08995 * 110.48474 * 143.47793 * 20 19 17 38 38 H 1.09003 * 110.48251 * 265.98371 * 20 19 17 39 39 H 0.97003 * 124.43317 * 179.64236 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8744 1.0685 5 6 3.5208 -2.1579 0.7806 6 1 4.1755 -2.6892 1.4556 7 6 3.0698 -2.7755 -0.3796 8 7 2.0478 -2.2740 -1.0361 9 14 3.9163 -4.3183 -1.0061 10 1 5.0312 -4.6767 -0.0931 11 1 2.9383 -5.4347 -1.0543 12 1 4.4519 -4.0703 -2.3688 13 6 3.2048 -0.4175 2.3345 14 8 3.6091 -1.1421 3.2193 15 6 2.7798 0.9932 2.6511 16 6 2.9581 1.2558 4.1479 17 6 2.5260 2.6879 4.4693 18 6 3.3647 3.6857 3.6681 19 6 2.6697 2.9626 5.9828 20 6 1.4604 3.8881 6.2514 21 6 0.4780 3.5427 5.1541 22 8 -0.6994 3.8337 5.1591 23 7 1.1004 2.8675 4.1706 24 1 -1.0498 0.0000 0.0003 25 1 3.0095 -0.3620 -0.9614 26 1 3.0089 1.0149 0.1665 27 1 1.7332 -2.7048 -1.8462 28 1 3.3935 1.6934 2.0842 29 1 1.7324 1.1266 2.3807 30 1 2.3448 0.5557 4.7151 31 1 4.0056 1.1226 4.4180 32 1 3.2274 3.5025 2.6025 33 1 3.0475 4.7009 3.9065 34 1 4.4170 3.5645 3.9250 35 1 2.5891 2.0392 6.5562 36 1 3.6080 3.4733 6.1991 37 1 1.0290 3.6776 7.2299 38 1 1.7584 4.9344 6.1840 39 1 0.6639 2.5407 3.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491012784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:39 Heat of formation + Delta-G solvation = -14.241590 kcal Electronic energy + Delta-G solvation = -21939.001889 eV Core-core repulsion = 18655.340075 eV Total energy + Delta-G solvation = -3283.661814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.65641 -38.72555 -37.15048 -35.23998 -32.87568 -32.03181 -31.38949 -31.22728 -29.17036 -26.62415 -26.03778 -24.63437 -22.85481 -20.79602 -20.15428 -18.76686 -17.86883 -17.09575 -16.60835 -16.15736 -16.03410 -15.08891 -14.73551 -14.57650 -14.22983 -13.97882 -13.73065 -13.46420 -13.01002 -12.90241 -12.65787 -12.33680 -12.28244 -12.20426 -11.90264 -11.57625 -11.35432 -11.07787 -10.98937 -10.70639 -10.60176 -10.46432 -10.28837 -9.84834 -9.42005 -9.33422 -9.09410 -8.92457 -8.46075 -7.87351 -6.34876 -3.92550 2.61721 3.11365 3.23310 3.29248 3.37721 3.63695 3.86785 4.00177 4.13879 4.22870 4.37498 4.57766 4.84510 4.93055 5.02694 5.07825 5.27981 5.41359 5.44158 5.47472 5.56255 5.60429 5.69353 5.79367 5.82687 5.91959 5.92712 6.13896 6.31014 6.38984 6.51083 6.75242 6.86727 7.00429 7.09512 7.52641 8.03275 8.28533 8.39253 8.74783 9.10511 9.32366 9.87154 10.66161 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.004478 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.872754 B = 6251.698234 C = 6799.948259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.442 5.442 5 C -0.312 4.312 6 H 0.103 0.897 7 C 0.030 3.970 8 N -0.869 5.869 9 Si 0.923 3.077 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.452 3.548 14 O -0.584 6.584 15 C -0.135 4.135 16 C -0.099 4.099 17 C 0.153 3.847 18 C -0.159 4.159 19 C -0.123 4.123 20 C -0.156 4.156 21 C 0.518 3.482 22 O -0.544 6.544 23 N -0.718 5.718 24 H 0.199 0.801 25 H 0.114 0.886 26 H 0.059 0.941 27 H 0.268 0.732 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 12.217 6.422 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.160 5.160 5 C -0.440 4.440 6 H 0.120 0.880 7 C -0.174 4.174 8 N -0.508 5.508 9 Si 0.750 3.250 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.240 3.760 14 O -0.469 6.469 15 C -0.175 4.175 16 C -0.138 4.138 17 C 0.066 3.934 18 C -0.217 4.217 19 C -0.161 4.161 20 C -0.196 4.196 21 C 0.304 3.696 22 O -0.422 6.422 23 N -0.373 5.373 24 H 0.216 0.784 25 H 0.132 0.868 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.431 11.978 6.776 13.975 hybrid contribution -0.281 -1.044 -1.070 1.521 sum 2.150 10.934 5.706 12.520 Atomic orbital electron populations 1.24319 0.95429 1.05130 1.03229 1.23235 0.94392 0.96123 0.97785 1.18279 0.84124 0.91921 0.94850 1.43693 1.55608 1.12095 1.04644 1.19710 1.27358 0.89846 1.07043 0.87959 1.25330 0.95266 0.99175 0.97635 1.70026 1.21669 1.40889 1.18180 0.85905 0.79366 0.81102 0.78600 1.19245 1.20869 1.20635 1.20084 0.84065 0.89113 0.82697 1.90522 1.51372 1.59445 1.45521 1.21638 1.02189 0.96749 0.96937 1.21604 1.03211 0.92907 0.96041 1.21173 0.80652 0.96552 0.95001 1.22238 1.00005 0.98356 1.01078 1.22708 0.98545 1.00507 0.94349 1.22340 0.96082 1.01828 0.99336 1.20915 0.87725 0.76760 0.84154 1.90741 1.16097 1.55741 1.79604 1.46522 1.10339 1.57351 1.23111 0.78390 0.86826 0.92326 0.92182 0.90138 0.90553 0.90636 0.89753 0.91435 0.92403 0.90911 0.89540 0.89066 0.88266 0.88049 0.74959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 19.25 29.55 0.57 -4.75 16 2 C -0.11 -2.47 10.77 -37.12 -0.40 -2.87 16 3 C 0.23 4.92 4.89 -6.83 -0.03 4.88 16 4 N -0.44 -10.73 2.61 -117.93 -0.31 -11.04 16 5 C -0.31 -8.38 9.31 -14.93 -0.14 -8.52 16 6 H 0.10 2.90 7.40 -52.48 -0.39 2.51 16 7 C 0.03 0.76 4.98 -17.47 -0.09 0.67 16 8 N -0.87 -22.49 9.38 55.50 0.52 -21.97 16 9 Si 0.92 20.23 29.58 -169.99 -5.03 15.20 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 C 0.45 10.31 7.54 -10.99 -0.08 10.23 16 14 O -0.58 -15.32 15.66 5.54 0.09 -15.23 16 15 C -0.13 -2.21 3.83 -27.88 -0.11 -2.32 16 16 C -0.10 -1.39 3.70 -26.73 -0.10 -1.49 16 17 C 0.15 1.64 0.87 -130.90 -0.11 1.53 16 18 C -0.16 -1.44 8.41 37.16 0.31 -1.13 16 19 C -0.12 -1.06 6.21 -25.09 -0.16 -1.22 16 20 C -0.16 -1.44 6.86 -26.74 -0.18 -1.62 16 21 C 0.52 7.01 8.43 -10.80 -0.09 6.92 16 22 O -0.54 -9.66 18.03 5.56 0.10 -9.56 16 23 N -0.72 -8.95 5.40 -46.58 -0.25 -9.20 16 24 H 0.20 3.33 7.80 -54.10 -0.42 2.90 16 25 H 0.11 2.58 6.35 -51.93 -0.33 2.25 16 26 H 0.06 1.01 6.79 -51.93 -0.35 0.66 16 27 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.08 1.14 5.77 -51.93 -0.30 0.84 16 29 H 0.08 1.25 6.09 -51.93 -0.32 0.94 16 30 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 31 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.07 0.65 6.49 -51.93 -0.34 0.31 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.09 0.59 7.89 -51.93 -0.41 0.18 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.41 5.35 7.69 -40.82 -0.31 5.03 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -32.87 324.27 -5.85 -38.72 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.25 Total: 7.86 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.61 Total: 0.32 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.04 Total: -42.20 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.19 Total: -24.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.87 -5.85 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.479 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds