Wall clock time and date at job start Tue Mar 31 2020 00:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47303 * 309.32203 * 3 2 1 5 5 C 1.37092 * 119.99899 * 98.06060 * 4 3 2 6 6 H 1.08006 * 119.99881 * 159.35803 * 5 4 3 7 7 C 1.38956 * 120.00412 * 339.35879 * 5 4 3 8 8 N 1.31408 * 119.99555 * 344.11115 * 7 5 4 9 9 Si 1.86796 * 120.00197 * 164.10825 * 7 5 4 10 10 H 1.48499 * 109.47319 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47259 * 120.00020 * 9 7 5 12 12 H 1.48498 * 109.47040 * 240.00458 * 9 7 5 13 13 C 1.34771 * 119.99801 * 278.06505 * 4 3 2 14 14 O 1.21300 * 119.99903 * 179.97438 * 13 4 3 15 15 C 1.50695 * 120.00361 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47380 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.46980 * 180.02562 * 16 15 13 18 18 C 1.53006 * 110.21574 * 300.69491 * 17 16 15 19 19 C 1.54487 * 110.24374 * 178.77114 * 17 16 15 20 20 C 1.54628 * 101.76249 * 215.58316 * 19 17 16 21 21 C 1.51278 * 104.19723 * 24.79367 * 20 19 17 22 22 O 1.21282 * 124.93814 * 163.77115 * 21 20 19 23 23 N 1.34560 * 110.14121 * 343.67984 * 21 20 19 24 24 H 4.40643 * 5.51334 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47168 * 69.32630 * 3 2 1 26 26 H 1.09001 * 109.47048 * 189.32123 * 3 2 1 27 27 H 0.96997 * 120.00086 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46859 * 299.99524 * 15 13 4 29 29 H 1.08999 * 109.47602 * 59.99959 * 15 13 4 30 30 H 1.08997 * 109.46758 * 299.99684 * 16 15 13 31 31 H 1.08997 * 109.47540 * 59.99470 * 16 15 13 32 32 H 1.08999 * 109.46609 * 60.00301 * 18 17 16 33 33 H 1.08997 * 109.46861 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47014 * 300.00141 * 18 17 16 35 35 H 1.08997 * 110.96789 * 333.69571 * 19 17 16 36 36 H 1.08994 * 110.97101 * 97.42748 * 19 17 16 37 37 H 1.08995 * 110.48474 * 143.47793 * 20 19 17 38 38 H 1.09003 * 110.48251 * 265.98371 * 20 19 17 39 39 H 0.97003 * 124.43317 * 179.64236 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8744 1.0685 5 6 3.5208 -2.1579 0.7806 6 1 4.1755 -2.6892 1.4556 7 6 3.0698 -2.7755 -0.3796 8 7 2.0478 -2.2740 -1.0361 9 14 3.9163 -4.3183 -1.0061 10 1 5.0312 -4.6767 -0.0931 11 1 2.9383 -5.4347 -1.0543 12 1 4.4519 -4.0703 -2.3688 13 6 3.2048 -0.4175 2.3345 14 8 3.6091 -1.1421 3.2193 15 6 2.7798 0.9932 2.6511 16 6 2.9581 1.2558 4.1479 17 6 2.5260 2.6879 4.4693 18 6 3.3647 3.6857 3.6681 19 6 2.6697 2.9626 5.9828 20 6 1.4604 3.8881 6.2514 21 6 0.4780 3.5427 5.1541 22 8 -0.6994 3.8337 5.1591 23 7 1.1004 2.8675 4.1706 24 1 -1.0498 0.0000 0.0003 25 1 3.0095 -0.3620 -0.9614 26 1 3.0089 1.0149 0.1665 27 1 1.7332 -2.7048 -1.8462 28 1 3.3935 1.6934 2.0842 29 1 1.7324 1.1266 2.3807 30 1 2.3448 0.5557 4.7151 31 1 4.0056 1.1226 4.4180 32 1 3.2274 3.5025 2.6025 33 1 3.0475 4.7009 3.9065 34 1 4.4170 3.5645 3.9250 35 1 2.5891 2.0392 6.5562 36 1 3.6080 3.4733 6.1991 37 1 1.0290 3.6776 7.2299 38 1 1.7584 4.9344 6.1840 39 1 0.6639 2.5407 3.3683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:38 Heat of formation + Delta-G solvation = -36.421077 kcal Electronic energy + Delta-G solvation = -21939.963664 eV Core-core repulsion = 18655.340075 eV Total energy + Delta-G solvation = -3284.623589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.64430 -40.44883 -38.29238 -37.07125 -34.31693 -33.62557 -33.01360 -32.24646 -30.22444 -28.29705 -27.27174 -26.12492 -24.07574 -21.75038 -21.24792 -20.28735 -19.65076 -18.50768 -18.20206 -17.56670 -17.01710 -16.55644 -16.36951 -15.95877 -15.77385 -15.08980 -15.00491 -14.65566 -14.40427 -14.04513 -13.98508 -13.62381 -13.42833 -13.37898 -13.16106 -13.01729 -12.81652 -12.50589 -12.41420 -12.14948 -11.94923 -11.73139 -11.46696 -11.21789 -11.09233 -10.91074 -10.63931 -10.30741 -10.10043 -9.78804 -8.30168 -5.95295 1.35322 1.42170 1.54792 1.60227 1.90702 2.14129 2.31809 2.36770 2.43549 3.07757 3.15349 3.41020 3.58085 3.82309 3.89325 4.00125 4.09250 4.25098 4.32441 4.39576 4.55092 4.65181 4.75922 4.82721 4.96279 4.99560 5.03007 5.05700 5.18141 5.19870 5.28873 5.42255 5.46381 5.47699 5.89073 6.08858 6.11289 6.46241 7.11038 7.16667 7.25572 7.45048 8.01244 8.68335 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.004478 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.872754 B = 6251.698234 C = 6799.948259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.149 4.149 3 C 0.234 3.766 4 N -0.456 5.456 5 C -0.346 4.346 6 H 0.074 0.926 7 C 0.000 4.000 8 N -0.880 5.880 9 Si 0.984 3.016 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.440 3.560 14 O -0.628 6.628 15 C -0.121 4.121 16 C -0.092 4.092 17 C 0.157 3.843 18 C -0.157 4.157 19 C -0.117 4.117 20 C -0.145 4.145 21 C 0.507 3.493 22 O -0.596 6.596 23 N -0.719 5.719 24 H 0.228 0.772 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.270 0.730 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 13.861 6.515 15.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.150 4.150 3 C 0.112 3.888 4 N -0.175 5.175 5 C -0.474 4.474 6 H 0.092 0.908 7 C -0.203 4.203 8 N -0.518 5.518 9 Si 0.809 3.191 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.231 3.769 14 O -0.515 6.515 15 C -0.161 4.161 16 C -0.130 4.130 17 C 0.071 3.929 18 C -0.215 4.215 19 C -0.154 4.154 20 C -0.185 4.185 21 C 0.296 3.704 22 O -0.478 6.478 23 N -0.373 5.373 24 H 0.245 0.755 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.153 13.641 6.847 15.585 hybrid contribution -0.535 -1.598 -1.111 2.018 sum 2.618 12.044 5.736 13.594 Atomic orbital electron populations 1.25118 0.96381 1.03839 1.01807 1.23532 0.95041 0.97344 0.99081 1.18337 0.84237 0.93165 0.93096 1.43918 1.55784 1.11779 1.05981 1.19614 1.28499 0.91581 1.07718 0.90781 1.25983 0.95519 1.01633 0.97160 1.70126 1.21886 1.41668 1.18123 0.85014 0.78099 0.77648 0.78389 1.19800 1.20950 1.18999 1.21180 0.82621 0.91293 0.81793 1.90482 1.53044 1.61318 1.46667 1.21598 1.02472 0.92874 0.99111 1.21538 1.02959 0.94711 0.93833 1.21257 0.79772 0.94734 0.97139 1.22249 1.00631 0.98340 1.00285 1.22776 0.99837 1.00621 0.92215 1.22377 0.94798 1.03364 0.97927 1.21692 0.87624 0.76033 0.85079 1.90707 1.18449 1.57866 1.80730 1.46702 1.11185 1.56657 1.22708 0.75495 0.88730 0.88324 0.91988 0.87114 0.90377 0.93314 0.89495 0.92029 0.90938 0.89088 0.90016 0.85732 0.87297 0.85441 0.75744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.94 19.25 74.32 1.43 -8.51 16 2 C -0.15 -6.34 10.77 31.13 0.34 -6.01 16 3 C 0.23 9.87 4.89 84.57 0.41 10.28 16 4 N -0.46 -22.51 2.61 -645.41 -1.68 -24.20 16 5 C -0.35 -19.15 9.31 84.04 0.78 -18.36 16 6 H 0.07 4.41 7.40 -2.91 -0.02 4.39 16 7 C 0.00 -0.02 4.98 84.93 0.42 0.40 16 8 N -0.88 -45.58 9.38 21.66 0.20 -45.38 16 9 Si 0.98 41.84 29.58 68.60 2.03 43.87 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 13 C 0.44 20.41 7.54 87.66 0.66 21.07 16 14 O -0.63 -34.02 15.66 -3.09 -0.05 -34.07 16 15 C -0.12 -3.85 3.83 29.85 0.11 -3.73 16 16 C -0.09 -2.48 3.70 30.60 0.11 -2.36 16 17 C 0.16 2.99 0.87 4.06 0.00 2.99 16 18 C -0.16 -2.27 8.41 71.98 0.61 -1.67 16 19 C -0.12 -1.63 6.21 31.65 0.20 -1.44 16 20 C -0.14 -2.25 6.86 30.59 0.21 -2.04 16 21 C 0.51 13.14 8.43 87.87 0.74 13.88 16 22 O -0.60 -21.17 18.03 -3.04 -0.05 -21.22 16 23 N -0.72 -17.01 5.40 -419.79 -2.27 -19.27 16 24 H 0.23 7.13 7.80 -4.43 -0.03 7.10 16 25 H 0.09 4.33 6.35 -2.39 -0.02 4.31 16 26 H 0.10 3.24 6.79 -2.39 -0.02 3.23 16 27 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.11 2.86 5.77 -2.38 -0.01 2.84 16 29 H 0.08 2.50 6.09 -2.39 -0.01 2.48 16 30 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 31 H 0.09 2.32 8.10 -2.39 -0.02 2.30 16 32 H 0.06 0.98 6.49 -2.39 -0.02 0.96 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.26 7.91 -2.39 -0.02 1.24 16 36 H 0.12 0.98 7.89 -2.39 -0.02 0.97 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.40 10.27 7.69 -92.71 -0.71 9.56 16 Total: -1.00 -74.35 324.27 4.56 -69.79 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.35 Total: 25.98 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.03 Total: 4.49 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -3.75 Total: -88.85 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -0.10 Total: -55.29 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -74.35 4.56 -69.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.368 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds