Wall clock time and date at job start Mon Mar 30 2020 23:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00091 * 2 1 4 4 O 1.20823 * 120.00034 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00118 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.47358 * 179.97438 * 5 3 2 7 7 C 1.36928 * 120.00063 * 264.01083 * 6 5 3 8 8 H 1.08001 * 120.00411 * 196.22667 * 7 6 5 9 9 C 1.38815 * 120.00188 * 16.22511 * 7 6 5 10 10 N 1.31627 * 119.99901 * 22.12130 * 9 7 6 11 11 Si 1.86800 * 120.00327 * 202.11545 * 9 7 6 12 12 H 1.48509 * 109.46579 * 60.00231 * 11 9 7 13 13 H 1.48499 * 109.47398 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47235 * 300.00297 * 11 9 7 15 15 C 1.46501 * 119.99611 * 84.00560 * 6 5 3 16 16 C 1.53004 * 109.46923 * 90.00616 * 15 6 5 17 17 C 1.50695 * 109.47260 * 180.02562 * 16 15 6 18 18 C 1.38225 * 119.62308 * 125.00121 * 17 16 15 19 19 C 1.38630 * 119.16521 * 179.97438 * 18 17 16 20 20 C 1.38678 * 118.41596 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.16663 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.62136 * 179.97438 * 21 20 19 23 23 N 1.31859 * 119.61460 * 304.72048 * 17 16 15 24 24 H 1.08992 * 109.47315 * 300.00173 * 1 2 3 25 25 H 1.09001 * 109.46697 * 60.00664 * 1 2 3 26 26 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47189 * 59.99829 * 5 3 2 28 28 H 1.09003 * 109.47124 * 299.99832 * 5 3 2 29 29 H 0.96991 * 120.00161 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.46693 * 209.99993 * 15 6 5 31 31 H 1.09000 * 109.47471 * 330.00616 * 15 6 5 32 32 H 1.09010 * 109.46877 * 299.99819 * 16 15 6 33 33 H 1.08995 * 109.47349 * 59.99395 * 16 15 6 34 34 H 1.08006 * 120.41689 * 359.94791 * 18 17 16 35 35 H 1.07994 * 120.79029 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.41456 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46655 * 89.99726 * 22 21 20 38 38 H 1.08999 * 109.47398 * 210.00181 * 22 21 20 39 39 H 1.09004 * 109.46590 * 330.00131 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6798 -0.0002 7 6 4.2950 3.3005 -1.1798 8 1 4.8433 4.2309 -1.1715 9 6 3.9081 2.7338 -2.3865 10 7 2.9060 1.8811 -2.4217 11 14 4.8093 3.1814 -3.9603 12 1 6.2417 2.8107 -3.8329 13 1 4.2070 2.4468 -5.1017 14 1 4.6953 4.6429 -4.1974 15 6 4.0619 3.4205 1.2612 16 6 5.4655 3.2717 1.8517 17 6 5.5478 4.0332 3.1496 18 6 5.9514 3.3813 4.2997 19 6 6.0243 4.0911 5.4883 20 6 5.6873 5.4362 5.4754 21 6 5.2925 6.0202 4.2870 22 6 4.9235 7.4811 4.2614 23 7 5.2392 5.3149 3.1738 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 2.6353 1.4854 -3.2649 30 1 3.8550 4.4747 1.0772 31 1 3.3285 3.0234 1.9631 32 1 5.6724 2.2174 2.0357 33 1 6.1989 3.6688 1.1500 34 1 6.2065 2.3322 4.2728 35 1 6.3367 3.6081 6.4023 36 1 5.7321 6.0198 6.3830 37 1 5.8118 8.0765 4.0501 38 1 4.1773 7.6539 3.4858 39 1 4.5146 7.7695 5.2298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517362858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:14 Heat of formation + Delta-G solvation = -30.894434 kcal Electronic energy + Delta-G solvation = -21590.289780 eV Core-core repulsion = 18305.905844 eV Total energy + Delta-G solvation = -3284.383936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.12301 -38.92199 -36.20587 -34.71660 -33.56376 -32.62580 -31.33857 -29.38654 -27.97655 -27.01921 -25.92055 -24.32148 -22.29379 -21.68213 -20.66292 -19.57655 -16.86011 -16.33449 -16.19101 -16.08838 -15.47230 -15.09863 -14.99037 -14.59931 -14.39455 -13.77383 -13.56401 -13.04126 -12.98492 -12.60216 -12.45394 -12.20919 -12.10086 -12.05312 -11.56715 -11.37223 -11.16647 -11.06450 -10.79237 -10.47767 -10.29594 -9.98149 -9.90646 -9.63883 -9.59746 -9.24812 -9.03918 -8.63163 -8.46245 -6.99310 -5.87135 -3.19432 1.26221 1.43711 3.40507 3.46098 3.47494 3.86997 3.93151 4.06450 4.39300 4.50858 4.79489 4.88897 5.15014 5.26359 5.34354 5.41985 5.59151 5.61308 5.65292 5.80615 5.81932 5.87312 5.89378 6.08371 6.10171 6.16242 6.27172 6.31964 6.34698 6.42580 6.67146 6.81340 6.89559 7.05093 7.13126 7.73131 7.80470 8.24407 8.28066 9.07399 9.39995 9.76217 10.19492 11.23963 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.005115 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.375296 B = 5472.335930 C = 6570.536735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.463 3.537 4 O -0.506 6.506 5 C 0.188 3.812 6 N -0.566 5.566 7 C -0.253 4.253 8 H 0.081 0.919 9 C 0.000 4.000 10 N -0.905 5.905 11 Si 0.909 3.091 12 H -0.283 1.283 13 H -0.292 1.292 14 H -0.284 1.284 15 C 0.160 3.840 16 C -0.092 4.092 17 C 0.155 3.845 18 C -0.184 4.184 19 C -0.073 4.073 20 C -0.193 4.193 21 C 0.129 3.871 22 C -0.104 4.104 23 N -0.478 5.478 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.257 0.743 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 0.877 13.945 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.301 6.301 3 C 0.303 3.697 4 O -0.391 6.391 5 C 0.059 3.941 6 N -0.285 5.285 7 C -0.382 4.382 8 H 0.099 0.901 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.739 3.261 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.033 3.967 16 C -0.132 4.132 17 C 0.016 3.984 18 C -0.204 4.204 19 C -0.099 4.099 20 C -0.212 4.212 21 C -0.009 4.009 22 C -0.161 4.161 23 N -0.188 5.188 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.731 1.547 13.002 13.615 hybrid contribution 0.212 -0.174 -0.128 0.303 sum 3.943 1.373 12.874 13.534 Atomic orbital electron populations 1.22852 0.79928 1.01277 1.01241 1.86548 1.20920 1.36848 1.85777 1.25676 0.93651 0.80162 0.70258 1.90468 1.66695 1.36506 1.45381 1.20330 0.85331 0.87018 1.01470 1.44026 1.74748 1.06963 1.02736 1.19276 1.28888 1.07229 0.82813 0.90106 1.24844 0.96795 1.00146 0.97964 1.69869 1.25014 1.34167 1.25900 0.86246 0.79486 0.77880 0.82492 1.20958 1.21749 1.20977 1.20659 0.91422 0.97315 0.87278 1.21297 1.02750 0.97845 0.91317 1.21577 0.91260 0.89702 0.95826 1.22016 1.03459 1.01472 0.93413 1.21506 0.96183 0.94098 0.98095 1.21835 1.04262 0.95978 0.99174 1.21306 0.94224 0.96686 0.88666 1.20703 1.02441 0.89913 1.03041 1.67420 1.14816 1.07564 1.29023 0.93680 0.92867 0.90145 0.86811 0.93113 0.93269 0.91876 0.94821 0.90974 0.89574 0.84972 0.85304 0.85439 0.90640 0.90284 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.49 10.56 -39.25 -0.41 -8.91 16 3 C 0.46 11.56 6.17 36.00 0.22 11.78 16 4 O -0.51 -14.31 15.88 -18.75 -0.30 -14.61 16 5 C 0.19 4.43 5.49 -5.19 -0.03 4.40 16 6 N -0.57 -13.98 2.03 -174.61 -0.35 -14.33 16 7 C -0.25 -6.85 9.66 -15.06 -0.15 -6.99 16 8 H 0.08 2.16 7.92 -52.49 -0.42 1.74 16 9 C 0.00 0.01 4.86 -17.43 -0.08 -0.08 16 10 N -0.90 -25.91 9.31 55.49 0.52 -25.40 16 11 Si 0.91 21.70 29.61 -169.99 -5.03 16.67 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.16 3.46 5.50 -4.04 -0.02 3.44 16 16 C -0.09 -1.62 5.94 -27.88 -0.17 -1.78 16 17 C 0.15 2.52 6.17 -82.59 -0.51 2.01 16 18 C -0.18 -2.45 9.71 -39.44 -0.38 -2.83 16 19 C -0.07 -0.84 10.18 -39.27 -0.40 -1.24 16 20 C -0.19 -2.26 9.74 -39.44 -0.38 -2.65 16 21 C 0.13 1.81 6.78 -82.59 -0.56 1.25 16 22 C -0.10 -1.12 10.17 36.01 0.37 -0.75 16 23 N -0.48 -8.15 9.80 -5.74 -0.06 -8.21 16 24 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.11 2.86 6.35 -51.93 -0.33 2.53 16 28 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.06 1.48 7.85 -51.93 -0.41 1.07 16 31 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.07 1.15 7.87 -51.92 -0.41 0.74 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.13 1.48 7.95 -52.48 -0.42 1.06 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -33.10 334.92 -7.38 -40.48 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.76 Total: 0.89 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -1.03 Total: 8.39 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.11 Total: -47.94 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.71 Total: -23.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.10 -7.38 -40.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517362858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.583 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds