Wall clock time and date at job start Mon Mar 30 2020 23:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 117.00091 * 2 1 4 4 O 1.20823 * 120.00034 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00118 * 179.97438 * 3 2 1 6 6 N 1.46507 * 109.47358 * 179.97438 * 5 3 2 7 7 C 1.36928 * 120.00063 * 264.01083 * 6 5 3 8 8 H 1.08001 * 120.00411 * 196.22667 * 7 6 5 9 9 C 1.38815 * 120.00188 * 16.22511 * 7 6 5 10 10 N 1.31627 * 119.99901 * 22.12130 * 9 7 6 11 11 Si 1.86800 * 120.00327 * 202.11545 * 9 7 6 12 12 H 1.48509 * 109.46579 * 60.00231 * 11 9 7 13 13 H 1.48499 * 109.47398 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47235 * 300.00297 * 11 9 7 15 15 C 1.46501 * 119.99611 * 84.00560 * 6 5 3 16 16 C 1.53004 * 109.46923 * 90.00616 * 15 6 5 17 17 C 1.50695 * 109.47260 * 180.02562 * 16 15 6 18 18 C 1.38225 * 119.62308 * 125.00121 * 17 16 15 19 19 C 1.38630 * 119.16521 * 179.97438 * 18 17 16 20 20 C 1.38678 * 118.41596 * 359.97438 * 19 18 17 21 21 C 1.38177 * 119.16663 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.62136 * 179.97438 * 21 20 19 23 23 N 1.31859 * 119.61460 * 304.72048 * 17 16 15 24 24 H 1.08992 * 109.47315 * 300.00173 * 1 2 3 25 25 H 1.09001 * 109.46697 * 60.00664 * 1 2 3 26 26 H 1.09005 * 109.47176 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47189 * 59.99829 * 5 3 2 28 28 H 1.09003 * 109.47124 * 299.99832 * 5 3 2 29 29 H 0.96991 * 120.00161 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.46693 * 209.99993 * 15 6 5 31 31 H 1.09000 * 109.47471 * 330.00616 * 15 6 5 32 32 H 1.09010 * 109.46877 * 299.99819 * 16 15 6 33 33 H 1.08995 * 109.47349 * 59.99395 * 16 15 6 34 34 H 1.08006 * 120.41689 * 359.94791 * 18 17 16 35 35 H 1.07994 * 120.79029 * 180.02562 * 19 18 17 36 36 H 1.07995 * 120.41456 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46655 * 89.99726 * 22 21 20 38 38 H 1.08999 * 109.47398 * 210.00181 * 22 21 20 39 39 H 1.09004 * 109.46590 * 330.00131 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9818 2.6798 -0.0002 7 6 4.2950 3.3005 -1.1798 8 1 4.8433 4.2309 -1.1715 9 6 3.9081 2.7338 -2.3865 10 7 2.9060 1.8811 -2.4217 11 14 4.8093 3.1814 -3.9603 12 1 6.2417 2.8107 -3.8329 13 1 4.2070 2.4468 -5.1017 14 1 4.6953 4.6429 -4.1974 15 6 4.0619 3.4205 1.2612 16 6 5.4655 3.2717 1.8517 17 6 5.5478 4.0332 3.1496 18 6 5.9514 3.3813 4.2997 19 6 6.0243 4.0911 5.4883 20 6 5.6873 5.4362 5.4754 21 6 5.2925 6.0202 4.2870 22 6 4.9235 7.4811 4.2614 23 7 5.2392 5.3149 3.1738 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7809 0.8909 29 1 2.6353 1.4854 -3.2649 30 1 3.8550 4.4747 1.0772 31 1 3.3285 3.0234 1.9631 32 1 5.6724 2.2174 2.0357 33 1 6.1989 3.6688 1.1500 34 1 6.2065 2.3322 4.2728 35 1 6.3367 3.6081 6.4023 36 1 5.7321 6.0198 6.3830 37 1 5.8118 8.0765 4.0501 38 1 4.1773 7.6539 3.4858 39 1 4.5146 7.7695 5.2298 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517362858.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:13 Heat of formation + Delta-G solvation = -50.422068 kcal Electronic energy + Delta-G solvation = -21591.136562 eV Core-core repulsion = 18305.905844 eV Total energy + Delta-G solvation = -3285.230718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18169 -40.80839 -38.00357 -36.59805 -34.96232 -33.67761 -33.07584 -30.89711 -29.58970 -28.19487 -27.65953 -25.91072 -23.65799 -22.85505 -22.17224 -21.43354 -18.82523 -18.14477 -17.39055 -17.20508 -17.14716 -16.89054 -16.61225 -15.98830 -15.65434 -15.50914 -15.08265 -14.39336 -14.25459 -14.05262 -13.84445 -13.61077 -13.51055 -13.13098 -13.05807 -12.86897 -12.74719 -12.69106 -12.43758 -12.30845 -12.15085 -11.89621 -11.71210 -11.41601 -11.12558 -10.68055 -10.55939 -10.20756 -9.66280 -8.95424 -7.95303 -5.29300 0.24195 0.46870 1.49126 1.50363 1.58216 1.95882 2.30264 2.54749 2.88451 3.24630 3.34095 3.53622 3.94463 3.99493 4.24216 4.29526 4.37295 4.38771 4.44307 4.50590 4.58759 4.68197 4.69304 4.74174 4.79588 4.80690 4.88143 4.94505 5.12664 5.14189 5.24919 5.32508 5.42198 5.43839 5.62419 5.90505 5.92842 6.22579 7.02674 7.23185 7.45795 7.77519 8.16787 9.13333 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015429 B = 0.005115 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.375296 B = 5472.335930 C = 6570.536735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.384 6.384 3 C 0.464 3.536 4 O -0.548 6.548 5 C 0.187 3.813 6 N -0.580 5.580 7 C -0.262 4.262 8 H 0.074 0.926 9 C -0.047 4.047 10 N -0.929 5.929 11 Si 0.972 3.028 12 H -0.271 1.271 13 H -0.295 1.295 14 H -0.286 1.286 15 C 0.170 3.830 16 C -0.073 4.073 17 C 0.122 3.878 18 C -0.183 4.183 19 C -0.069 4.069 20 C -0.182 4.182 21 C 0.104 3.896 22 C -0.101 4.101 23 N -0.522 5.522 24 H 0.051 0.949 25 H 0.033 0.967 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.250 0.750 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 0.223 16.300 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.301 6.301 3 C 0.306 3.694 4 O -0.437 6.437 5 C 0.058 3.942 6 N -0.299 5.299 7 C -0.391 4.391 8 H 0.092 0.908 9 C -0.242 4.242 10 N -0.576 5.576 11 Si 0.801 3.199 12 H -0.197 1.197 13 H -0.221 1.221 14 H -0.213 1.213 15 C 0.044 3.956 16 C -0.113 4.113 17 C -0.016 4.016 18 C -0.203 4.203 19 C -0.095 4.095 20 C -0.202 4.202 21 C -0.034 4.034 22 C -0.159 4.159 23 N -0.233 5.233 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.147 0.853 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.182 0.818 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.868 0.879 15.387 16.163 hybrid contribution -0.205 0.056 -0.728 0.759 sum 4.663 0.935 14.659 15.412 Atomic orbital electron populations 1.23176 0.77542 1.04278 1.00659 1.86503 1.23224 1.35228 1.85125 1.25908 0.94251 0.80193 0.68999 1.90443 1.67707 1.37995 1.47528 1.20424 0.84715 0.86614 1.02454 1.44214 1.75082 1.07628 1.02990 1.19474 1.28395 1.07145 0.84098 0.90817 1.25542 0.97441 1.00634 1.00585 1.70025 1.26232 1.35423 1.25906 0.85267 0.78772 0.77107 0.78794 1.19662 1.22133 1.21264 1.20583 0.93888 0.94968 0.86144 1.20960 0.99084 0.99322 0.91976 1.21409 0.94083 0.89987 0.96080 1.22244 1.02482 1.02579 0.92988 1.21993 0.94729 0.93990 0.98760 1.22271 1.01937 0.96503 0.99459 1.21846 0.94809 0.97802 0.88894 1.20772 1.02453 0.88608 1.04022 1.67311 1.16237 1.08462 1.31309 0.93021 0.94763 0.85321 0.88420 0.89124 0.94024 0.95028 0.95410 0.88987 0.91382 0.82817 0.81324 0.81809 0.89603 0.92287 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.52 16 2 O -0.38 -16.80 10.56 -51.37 -0.54 -17.34 16 3 C 0.46 23.48 6.17 71.24 0.44 23.92 16 4 O -0.55 -31.88 15.88 21.97 0.35 -31.53 16 5 C 0.19 8.88 5.49 85.63 0.47 9.35 16 6 N -0.58 -29.36 2.03 -706.33 -1.43 -30.80 16 7 C -0.26 -14.56 9.66 84.04 0.81 -13.75 16 8 H 0.07 4.10 7.92 -2.91 -0.02 4.08 16 9 C -0.05 -2.63 4.86 84.86 0.41 -2.22 16 10 N -0.93 -54.46 9.31 21.65 0.20 -54.26 16 11 Si 0.97 45.51 29.61 68.60 2.03 47.55 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 15 C 0.17 7.61 5.50 86.38 0.47 8.09 16 16 C -0.07 -2.63 5.94 29.85 0.18 -2.45 16 17 C 0.12 3.95 6.17 42.55 0.26 4.21 16 18 C -0.18 -4.46 9.71 22.36 0.22 -4.24 16 19 C -0.07 -1.33 10.18 22.47 0.23 -1.10 16 20 C -0.18 -3.67 9.74 22.36 0.22 -3.46 16 21 C 0.10 2.80 6.78 42.54 0.29 3.09 16 22 C -0.10 -2.09 10.17 71.24 0.72 -1.36 16 23 N -0.52 -18.08 9.80 -172.08 -1.69 -19.77 16 24 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 25 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 26 H 0.13 3.26 8.14 -2.38 -0.02 3.24 16 27 H 0.10 4.97 6.35 -2.39 -0.02 4.96 16 28 H 0.09 3.49 8.12 -2.39 -0.02 3.47 16 29 H 0.25 14.45 8.31 -92.72 -0.77 13.68 16 30 H 0.03 1.57 7.85 -2.39 -0.02 1.55 16 31 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 32 H 0.09 2.84 7.87 -2.38 -0.02 2.82 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.15 2.95 7.95 -2.91 -0.02 2.93 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 Total: -1.00 -74.82 334.92 5.87 -68.95 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.03 Total: 14.61 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 5.92 Total: 22.59 kcal Atomic # 7 Polarization: -101.90 SS G_CDS: -2.92 Total: -104.82 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.19 Total: -48.87 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.82 5.87 -68.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517362858.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.528 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds